Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03985 and HER17_RS03990 are separated by 2 nucleotides HER17_RS03990 and HER17_RS03995 are separated by 115 nucleotides HER17_RS03995 and HER17_RS04000 are separated by 249 nucleotides
HER17_RS03985: HER17_RS03985 - translocation/assembly module TamB, at 897,230 to 901,267
_RS03985
HER17_RS03990: HER17_RS03990 - gamma-glutamylcyclotransferase, at 901,270 to 901,629
_RS03990
HER17_RS03995: HER17_RS03995 - inorganic diphosphatase, at 901,745 to 902,275
_RS03995
HER17_RS04000: HER17_RS04000 - methyl-accepting chemotaxis protein, at 902,525 to 904,111
_RS04000
Position (kb) 901
902
903 Strain fitness (log2 ratio) -2
-1
0
1
2 at 900.923 kb on + strand at 900.923 kb on + strand at 900.923 kb on + strand at 900.924 kb on - strand at 900.924 kb on - strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.965 kb on - strand at 900.965 kb on - strand at 900.965 kb on - strand at 901.050 kb on + strand at 901.050 kb on + strand at 901.051 kb on - strand at 901.060 kb on - strand at 901.069 kb on + strand at 901.112 kb on + strand at 901.139 kb on + strand at 901.139 kb on + strand at 901.139 kb on + strand at 901.152 kb on + strand at 901.152 kb on + strand at 901.179 kb on + strand at 901.180 kb on - strand at 901.180 kb on - strand at 901.239 kb on + strand at 901.239 kb on + strand at 901.239 kb on + strand at 901.240 kb on - strand at 901.240 kb on - strand at 901.240 kb on - strand at 901.251 kb on - strand at 901.265 kb on + strand at 901.266 kb on - strand at 901.278 kb on + strand at 901.279 kb on - strand at 901.295 kb on + strand at 901.295 kb on + strand at 901.375 kb on + strand, within HER17_RS03990 at 901.376 kb on - strand, within HER17_RS03990 at 901.391 kb on - strand, within HER17_RS03990 at 901.403 kb on + strand, within HER17_RS03990 at 901.404 kb on - strand, within HER17_RS03990 at 901.436 kb on - strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.444 kb on - strand, within HER17_RS03990 at 901.475 kb on + strand, within HER17_RS03990 at 901.516 kb on - strand, within HER17_RS03990 at 901.541 kb on - strand, within HER17_RS03990 at 901.541 kb on - strand, within HER17_RS03990 at 901.546 kb on + strand, within HER17_RS03990 at 901.563 kb on - strand, within HER17_RS03990 at 901.661 kb on + strand at 901.662 kb on - strand at 901.703 kb on + strand at 901.725 kb on + strand at 901.732 kb on + strand at 901.746 kb on + strand at 901.746 kb on + strand at 901.746 kb on + strand at 901.747 kb on - strand at 901.747 kb on - strand at 902.393 kb on + strand at 902.411 kb on + strand at 902.493 kb on + strand at 902.494 kb on - strand at 902.494 kb on - strand at 902.580 kb on + strand at 902.581 kb on - strand at 902.644 kb on + strand at 902.696 kb on + strand, within HER17_RS04000 at 902.696 kb on + strand, within HER17_RS04000 at 902.696 kb on + strand, within HER17_RS04000 at 902.696 kb on + strand, within HER17_RS04000 at 902.696 kb on + strand, within HER17_RS04000 at 902.696 kb on + strand, within HER17_RS04000 at 902.697 kb on - strand, within HER17_RS04000 at 902.697 kb on - strand, within HER17_RS04000 at 902.697 kb on - strand, within HER17_RS04000 at 902.698 kb on + strand, within HER17_RS04000 at 902.801 kb on + strand, within HER17_RS04000 at 902.801 kb on + strand, within HER17_RS04000 at 902.801 kb on + strand, within HER17_RS04000 at 902.801 kb on + strand, within HER17_RS04000 at 902.844 kb on - strand, within HER17_RS04000 at 902.887 kb on + strand, within HER17_RS04000 at 902.897 kb on + strand, within HER17_RS04000 at 902.906 kb on + strand, within HER17_RS04000 at 902.906 kb on + strand, within HER17_RS04000 at 902.906 kb on + strand, within HER17_RS04000 at 902.907 kb on - strand, within HER17_RS04000 at 902.966 kb on + strand, within HER17_RS04000 at 902.966 kb on + strand, within HER17_RS04000 at 902.966 kb on + strand, within HER17_RS04000 at 902.969 kb on + strand, within HER17_RS04000 at 902.970 kb on - strand, within HER17_RS04000 at 902.970 kb on - strand, within HER17_RS04000 at 902.970 kb on - strand, within HER17_RS04000 at 902.992 kb on - strand, within HER17_RS04000 at 903.124 kb on + strand, within HER17_RS04000 at 903.124 kb on + strand, within HER17_RS04000 at 903.124 kb on + strand, within HER17_RS04000 at 903.124 kb on + strand, within HER17_RS04000 at 903.125 kb on - strand, within HER17_RS04000 at 903.125 kb on - strand, within HER17_RS04000 at 903.125 kb on - strand, within HER17_RS04000 at 903.125 kb on - strand, within HER17_RS04000 at 903.127 kb on - strand, within HER17_RS04000
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 900,923 + -0.3 900,923 + -0.2 900,923 + +0.3 900,924 - -0.1 900,924 - -0.3 900,964 + +0.9 900,964 + -0.5 900,964 + +0.1 900,964 + -0.2 900,965 - +1.3 900,965 - -0.2 900,965 - +0.0 901,050 + -0.7 901,050 + -0.3 901,051 - -1.9 901,060 - -0.4 901,069 + -0.2 901,112 + -0.8 901,139 + -0.0 901,139 + +0.9 901,139 + +0.2 901,152 + +1.5 901,152 + -0.1 901,179 + -1.3 901,180 - +1.8 901,180 - -0.8 901,239 + -0.7 901,239 + -0.5 901,239 + +0.8 901,240 - +0.0 901,240 - -0.2 901,240 - +0.4 901,251 - +1.3 901,265 + +0.1 901,266 - -0.1 901,278 + -0.1 901,279 - +0.2 901,295 + -1.0 901,295 + -0.1 901,375 + HER17_RS03990 0.29 +0.2 901,376 - HER17_RS03990 0.29 -1.3 901,391 - HER17_RS03990 0.34 -0.6 901,403 + HER17_RS03990 0.37 -0.3 901,404 - HER17_RS03990 0.37 -0.5 901,436 - HER17_RS03990 0.46 -0.3 901,443 + HER17_RS03990 0.48 -1.8 901,443 + HER17_RS03990 0.48 -0.3 901,443 + HER17_RS03990 0.48 -0.2 901,443 + HER17_RS03990 0.48 -0.2 901,443 + HER17_RS03990 0.48 -0.7 901,444 - HER17_RS03990 0.48 -0.2 901,475 + HER17_RS03990 0.57 -0.4 901,516 - HER17_RS03990 0.68 -0.6 901,541 - HER17_RS03990 0.75 +0.2 901,541 - HER17_RS03990 0.75 -0.1 901,546 + HER17_RS03990 0.77 +0.1 901,563 - HER17_RS03990 0.81 -0.7 901,661 + -1.3 901,662 - +0.7 901,703 + +0.1 901,725 + -0.1 901,732 + -0.0 901,746 + +0.0 901,746 + +0.7 901,746 + -0.2 901,747 - -1.5 901,747 - -1.8 902,393 + -0.0 902,411 + +0.4 902,493 + +0.2 902,494 - -0.1 902,494 - -1.1 902,580 + +0.4 902,581 - +0.7 902,644 + -0.0 902,696 + HER17_RS04000 0.11 +0.2 902,696 + HER17_RS04000 0.11 -0.1 902,696 + HER17_RS04000 0.11 -0.2 902,696 + HER17_RS04000 0.11 +0.4 902,696 + HER17_RS04000 0.11 -0.6 902,696 + HER17_RS04000 0.11 -0.6 902,697 - HER17_RS04000 0.11 -0.2 902,697 - HER17_RS04000 0.11 +0.1 902,697 - HER17_RS04000 0.11 -0.2 902,698 + HER17_RS04000 0.11 -0.3 902,801 + HER17_RS04000 0.17 +0.3 902,801 + HER17_RS04000 0.17 -0.4 902,801 + HER17_RS04000 0.17 +0.0 902,801 + HER17_RS04000 0.17 +0.7 902,844 - HER17_RS04000 0.20 +0.5 902,887 + HER17_RS04000 0.23 +0.7 902,897 + HER17_RS04000 0.23 +1.0 902,906 + HER17_RS04000 0.24 +0.4 902,906 + HER17_RS04000 0.24 -0.2 902,906 + HER17_RS04000 0.24 +0.2 902,907 - HER17_RS04000 0.24 +0.3 902,966 + HER17_RS04000 0.28 +0.3 902,966 + HER17_RS04000 0.28 -1.8 902,966 + HER17_RS04000 0.28 -0.5 902,969 + HER17_RS04000 0.28 +0.2 902,970 - HER17_RS04000 0.28 -0.3 902,970 - HER17_RS04000 0.28 -0.2 902,970 - HER17_RS04000 0.28 +0.1 902,992 - HER17_RS04000 0.29 +0.7 903,124 + HER17_RS04000 0.38 -0.3 903,124 + HER17_RS04000 0.38 +0.5 903,124 + HER17_RS04000 0.38 -0.1 903,124 + HER17_RS04000 0.38 +0.1 903,125 - HER17_RS04000 0.38 -0.5 903,125 - HER17_RS04000 0.38 +0.9 903,125 - HER17_RS04000 0.38 +0.3 903,125 - HER17_RS04000 0.38 -0.2 903,127 - HER17_RS04000 0.38 -0.3
Or see this region's nucleotide sequence