Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03980 and HER17_RS03985 overlap by 4 nucleotides HER17_RS03985 and HER17_RS03990 are separated by 2 nucleotides HER17_RS03990 and HER17_RS03995 are separated by 115 nucleotides
HER17_RS03980: HER17_RS03980 - autotransporter assembly complex protein TamA, at 895,518 to 897,233
_RS03980
HER17_RS03985: HER17_RS03985 - translocation/assembly module TamB, at 897,230 to 901,267
_RS03985
HER17_RS03990: HER17_RS03990 - gamma-glutamylcyclotransferase, at 901,270 to 901,629
_RS03990
HER17_RS03995: HER17_RS03995 - inorganic diphosphatase, at 901,745 to 902,275
_RS03995
Position (kb) 897
898
899
900
901
902 Strain fitness (log2 ratio) -2
-1
0
1
2 at 896.357 kb on + strand, within HER17_RS03980 at 896.397 kb on - strand, within HER17_RS03980 at 896.436 kb on - strand, within HER17_RS03980 at 896.475 kb on + strand, within HER17_RS03980 at 896.475 kb on + strand, within HER17_RS03980 at 896.478 kb on + strand, within HER17_RS03980 at 896.478 kb on + strand, within HER17_RS03980 at 896.479 kb on - strand, within HER17_RS03980 at 896.479 kb on - strand, within HER17_RS03980 at 896.655 kb on + strand, within HER17_RS03980 at 896.738 kb on + strand, within HER17_RS03980 at 896.867 kb on + strand, within HER17_RS03980 at 896.868 kb on - strand, within HER17_RS03980 at 896.932 kb on - strand, within HER17_RS03980 at 896.932 kb on - strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.938 kb on - strand, within HER17_RS03980 at 896.945 kb on + strand, within HER17_RS03980 at 897.012 kb on + strand, within HER17_RS03980 at 897.013 kb on - strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.093 kb on - strand at 897.164 kb on + strand at 897.164 kb on + strand at 897.164 kb on + strand at 897.165 kb on - strand at 897.165 kb on - strand at 897.207 kb on + strand at 897.207 kb on + strand at 897.207 kb on + strand at 897.229 kb on + strand at 897.230 kb on - strand at 897.230 kb on - strand at 897.230 kb on - strand at 897.366 kb on + strand at 897.366 kb on + strand at 897.584 kb on - strand at 897.732 kb on + strand, within HER17_RS03985 at 897.733 kb on - strand, within HER17_RS03985 at 897.951 kb on + strand, within HER17_RS03985 at 897.951 kb on + strand, within HER17_RS03985 at 897.952 kb on - strand, within HER17_RS03985 at 897.952 kb on - strand, within HER17_RS03985 at 897.997 kb on + strand, within HER17_RS03985 at 898.005 kb on + strand, within HER17_RS03985 at 898.005 kb on + strand, within HER17_RS03985 at 898.015 kb on + strand, within HER17_RS03985 at 898.016 kb on - strand, within HER17_RS03985 at 898.016 kb on - strand, within HER17_RS03985 at 898.018 kb on + strand, within HER17_RS03985 at 898.019 kb on - strand, within HER17_RS03985 at 898.019 kb on - strand, within HER17_RS03985 at 898.153 kb on - strand, within HER17_RS03985 at 898.221 kb on + strand, within HER17_RS03985 at 898.222 kb on - strand, within HER17_RS03985 at 898.267 kb on - strand, within HER17_RS03985 at 898.509 kb on + strand, within HER17_RS03985 at 898.509 kb on + strand, within HER17_RS03985 at 898.510 kb on - strand, within HER17_RS03985 at 898.510 kb on - strand, within HER17_RS03985 at 898.720 kb on + strand, within HER17_RS03985 at 898.720 kb on + strand, within HER17_RS03985 at 898.721 kb on - strand, within HER17_RS03985 at 898.741 kb on + strand, within HER17_RS03985 at 898.810 kb on + strand, within HER17_RS03985 at 898.811 kb on - strand, within HER17_RS03985 at 898.818 kb on + strand, within HER17_RS03985 at 898.837 kb on - strand, within HER17_RS03985 at 898.853 kb on - strand, within HER17_RS03985 at 898.902 kb on + strand, within HER17_RS03985 at 898.923 kb on - strand, within HER17_RS03985 at 898.931 kb on - strand, within HER17_RS03985 at 898.984 kb on + strand, within HER17_RS03985 at 898.984 kb on + strand, within HER17_RS03985 at 898.985 kb on - strand, within HER17_RS03985 at 899.182 kb on + strand, within HER17_RS03985 at 899.187 kb on + strand, within HER17_RS03985 at 899.337 kb on + strand, within HER17_RS03985 at 899.337 kb on + strand, within HER17_RS03985 at 899.338 kb on - strand, within HER17_RS03985 at 899.419 kb on + strand, within HER17_RS03985 at 899.420 kb on - strand, within HER17_RS03985 at 899.420 kb on - strand, within HER17_RS03985 at 899.420 kb on - strand, within HER17_RS03985 at 899.420 kb on - strand, within HER17_RS03985 at 899.420 kb on - strand, within HER17_RS03985 at 899.506 kb on + strand, within HER17_RS03985 at 899.552 kb on - strand, within HER17_RS03985 at 899.564 kb on + strand, within HER17_RS03985 at 899.565 kb on - strand, within HER17_RS03985 at 899.737 kb on - strand, within HER17_RS03985 at 899.875 kb on + strand, within HER17_RS03985 at 899.882 kb on - strand, within HER17_RS03985 at 899.965 kb on + strand, within HER17_RS03985 at 900.022 kb on + strand, within HER17_RS03985 at 900.022 kb on + strand, within HER17_RS03985 at 900.023 kb on - strand, within HER17_RS03985 at 900.023 kb on - strand, within HER17_RS03985 at 900.023 kb on - strand, within HER17_RS03985 at 900.023 kb on - strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.025 kb on + strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.026 kb on - strand, within HER17_RS03985 at 900.058 kb on + strand, within HER17_RS03985 at 900.058 kb on + strand, within HER17_RS03985 at 900.160 kb on + strand, within HER17_RS03985 at 900.160 kb on + strand, within HER17_RS03985 at 900.426 kb on + strand, within HER17_RS03985 at 900.712 kb on + strand, within HER17_RS03985 at 900.712 kb on + strand, within HER17_RS03985 at 900.923 kb on + strand at 900.923 kb on + strand at 900.923 kb on + strand at 900.924 kb on - strand at 900.924 kb on - strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.964 kb on + strand at 900.965 kb on - strand at 900.965 kb on - strand at 900.965 kb on - strand at 901.050 kb on + strand at 901.050 kb on + strand at 901.051 kb on - strand at 901.060 kb on - strand at 901.069 kb on + strand at 901.112 kb on + strand at 901.139 kb on + strand at 901.139 kb on + strand at 901.139 kb on + strand at 901.152 kb on + strand at 901.152 kb on + strand at 901.179 kb on + strand at 901.180 kb on - strand at 901.180 kb on - strand at 901.239 kb on + strand at 901.239 kb on + strand at 901.239 kb on + strand at 901.240 kb on - strand at 901.240 kb on - strand at 901.240 kb on - strand at 901.251 kb on - strand at 901.265 kb on + strand at 901.266 kb on - strand at 901.278 kb on + strand at 901.279 kb on - strand at 901.295 kb on + strand at 901.295 kb on + strand at 901.375 kb on + strand, within HER17_RS03990 at 901.376 kb on - strand, within HER17_RS03990 at 901.391 kb on - strand, within HER17_RS03990 at 901.403 kb on + strand, within HER17_RS03990 at 901.404 kb on - strand, within HER17_RS03990 at 901.436 kb on - strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.443 kb on + strand, within HER17_RS03990 at 901.444 kb on - strand, within HER17_RS03990 at 901.475 kb on + strand, within HER17_RS03990 at 901.516 kb on - strand, within HER17_RS03990 at 901.541 kb on - strand, within HER17_RS03990 at 901.541 kb on - strand, within HER17_RS03990 at 901.546 kb on + strand, within HER17_RS03990 at 901.563 kb on - strand, within HER17_RS03990 at 901.661 kb on + strand at 901.662 kb on - strand at 901.703 kb on + strand at 901.725 kb on + strand at 901.732 kb on + strand at 901.746 kb on + strand at 901.746 kb on + strand at 901.746 kb on + strand at 901.747 kb on - strand at 901.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 896,357 + HER17_RS03980 0.49 -0.2 896,397 - HER17_RS03980 0.51 +0.2 896,436 - HER17_RS03980 0.53 +0.8 896,475 + HER17_RS03980 0.56 -0.0 896,475 + HER17_RS03980 0.56 +0.3 896,478 + HER17_RS03980 0.56 +0.2 896,478 + HER17_RS03980 0.56 +0.5 896,479 - HER17_RS03980 0.56 -0.5 896,479 - HER17_RS03980 0.56 +0.0 896,655 + HER17_RS03980 0.66 +0.1 896,738 + HER17_RS03980 0.71 +0.1 896,867 + HER17_RS03980 0.79 -0.1 896,868 - HER17_RS03980 0.79 -1.2 896,932 - HER17_RS03980 0.82 +0.0 896,932 - HER17_RS03980 0.82 -0.0 896,933 + HER17_RS03980 0.82 +0.2 896,933 + HER17_RS03980 0.82 -0.5 896,933 + HER17_RS03980 0.82 +0.3 896,933 + HER17_RS03980 0.82 -0.8 896,933 + HER17_RS03980 0.82 -0.5 896,933 + HER17_RS03980 0.82 +1.0 896,933 + HER17_RS03980 0.82 -0.1 896,933 + HER17_RS03980 0.82 -1.3 896,933 + HER17_RS03980 0.82 +0.1 896,933 + HER17_RS03980 0.82 -0.7 896,933 + HER17_RS03980 0.82 -0.7 896,933 + HER17_RS03980 0.82 +0.1 896,934 - HER17_RS03980 0.83 +0.4 896,934 - HER17_RS03980 0.83 -0.6 896,934 - HER17_RS03980 0.83 -0.1 896,934 - HER17_RS03980 0.83 -1.7 896,934 - HER17_RS03980 0.83 -0.1 896,934 - HER17_RS03980 0.83 -0.1 896,937 + HER17_RS03980 0.83 -0.1 896,937 + HER17_RS03980 0.83 -0.7 896,937 + HER17_RS03980 0.83 +0.2 896,938 - HER17_RS03980 0.83 +0.1 896,945 + HER17_RS03980 0.83 -0.2 897,012 + HER17_RS03980 0.87 +0.0 897,013 - HER17_RS03980 0.87 +0.4 897,018 + HER17_RS03980 0.87 -0.5 897,018 + HER17_RS03980 0.87 +0.2 897,018 + HER17_RS03980 0.87 +0.3 897,018 + HER17_RS03980 0.87 +0.3 897,019 - HER17_RS03980 0.87 +1.1 897,019 - HER17_RS03980 0.87 -0.8 897,019 - HER17_RS03980 0.87 +0.4 897,093 - -0.5 897,164 + +0.4 897,164 + -1.3 897,164 + -0.1 897,165 - -1.8 897,165 - +0.2 897,207 + -0.0 897,207 + -0.1 897,207 + -0.3 897,229 + +0.8 897,230 - +0.5 897,230 - +0.4 897,230 - -0.0 897,366 + -0.1 897,366 + -0.3 897,584 - +0.3 897,732 + HER17_RS03985 0.12 -0.5 897,733 - HER17_RS03985 0.12 +0.2 897,951 + HER17_RS03985 0.18 +1.2 897,951 + HER17_RS03985 0.18 -0.2 897,952 - HER17_RS03985 0.18 -0.1 897,952 - HER17_RS03985 0.18 -0.3 897,997 + HER17_RS03985 0.19 +0.3 898,005 + HER17_RS03985 0.19 +0.5 898,005 + HER17_RS03985 0.19 +0.2 898,015 + HER17_RS03985 0.19 -0.9 898,016 - HER17_RS03985 0.19 -0.4 898,016 - HER17_RS03985 0.19 +0.1 898,018 + HER17_RS03985 0.20 -0.4 898,019 - HER17_RS03985 0.20 +0.1 898,019 - HER17_RS03985 0.20 -0.8 898,153 - HER17_RS03985 0.23 -0.1 898,221 + HER17_RS03985 0.25 -1.2 898,222 - HER17_RS03985 0.25 +0.4 898,267 - HER17_RS03985 0.26 -0.1 898,509 + HER17_RS03985 0.32 -1.2 898,509 + HER17_RS03985 0.32 +0.6 898,510 - HER17_RS03985 0.32 +0.6 898,510 - HER17_RS03985 0.32 +1.3 898,720 + HER17_RS03985 0.37 -0.6 898,720 + HER17_RS03985 0.37 -0.2 898,721 - HER17_RS03985 0.37 +1.0 898,741 + HER17_RS03985 0.37 -0.2 898,810 + HER17_RS03985 0.39 -0.0 898,811 - HER17_RS03985 0.39 -0.7 898,818 + HER17_RS03985 0.39 -0.2 898,837 - HER17_RS03985 0.40 -0.5 898,853 - HER17_RS03985 0.40 +0.3 898,902 + HER17_RS03985 0.41 -0.1 898,923 - HER17_RS03985 0.42 +0.3 898,931 - HER17_RS03985 0.42 -0.2 898,984 + HER17_RS03985 0.43 +0.0 898,984 + HER17_RS03985 0.43 -0.9 898,985 - HER17_RS03985 0.43 +0.5 899,182 + HER17_RS03985 0.48 -0.0 899,187 + HER17_RS03985 0.48 -0.6 899,337 + HER17_RS03985 0.52 +0.3 899,337 + HER17_RS03985 0.52 +0.1 899,338 - HER17_RS03985 0.52 +0.3 899,419 + HER17_RS03985 0.54 -0.9 899,420 - HER17_RS03985 0.54 +0.3 899,420 - HER17_RS03985 0.54 +0.4 899,420 - HER17_RS03985 0.54 -0.9 899,420 - HER17_RS03985 0.54 -1.4 899,420 - HER17_RS03985 0.54 +0.7 899,506 + HER17_RS03985 0.56 +0.2 899,552 - HER17_RS03985 0.58 -0.2 899,564 + HER17_RS03985 0.58 -1.1 899,565 - HER17_RS03985 0.58 +0.6 899,737 - HER17_RS03985 0.62 -0.2 899,875 + HER17_RS03985 0.66 -0.3 899,882 - HER17_RS03985 0.66 -0.3 899,965 + HER17_RS03985 0.68 -1.1 900,022 + HER17_RS03985 0.69 +0.5 900,022 + HER17_RS03985 0.69 +0.1 900,023 - HER17_RS03985 0.69 -1.2 900,023 - HER17_RS03985 0.69 +0.1 900,023 - HER17_RS03985 0.69 -0.8 900,023 - HER17_RS03985 0.69 -0.6 900,025 + HER17_RS03985 0.69 +0.3 900,025 + HER17_RS03985 0.69 +0.6 900,025 + HER17_RS03985 0.69 +0.7 900,025 + HER17_RS03985 0.69 -1.7 900,025 + HER17_RS03985 0.69 +0.6 900,025 + HER17_RS03985 0.69 -0.1 900,025 + HER17_RS03985 0.69 -0.3 900,026 - HER17_RS03985 0.69 +0.2 900,026 - HER17_RS03985 0.69 -0.5 900,026 - HER17_RS03985 0.69 -0.1 900,026 - HER17_RS03985 0.69 -1.5 900,026 - HER17_RS03985 0.69 -0.5 900,026 - HER17_RS03985 0.69 -0.3 900,026 - HER17_RS03985 0.69 +0.6 900,058 + HER17_RS03985 0.70 +0.1 900,058 + HER17_RS03985 0.70 +0.7 900,160 + HER17_RS03985 0.73 -0.9 900,160 + HER17_RS03985 0.73 -0.6 900,426 + HER17_RS03985 0.79 +0.3 900,712 + HER17_RS03985 0.86 +0.8 900,712 + HER17_RS03985 0.86 -0.1 900,923 + -0.3 900,923 + -0.2 900,923 + +0.3 900,924 - -0.1 900,924 - -0.3 900,964 + +0.9 900,964 + -0.5 900,964 + +0.1 900,964 + -0.2 900,965 - +1.3 900,965 - -0.2 900,965 - +0.0 901,050 + -0.7 901,050 + -0.3 901,051 - -1.9 901,060 - -0.4 901,069 + -0.2 901,112 + -0.8 901,139 + -0.0 901,139 + +0.9 901,139 + +0.2 901,152 + +1.5 901,152 + -0.1 901,179 + -1.3 901,180 - +1.8 901,180 - -0.8 901,239 + -0.7 901,239 + -0.5 901,239 + +0.8 901,240 - +0.0 901,240 - -0.2 901,240 - +0.4 901,251 - +1.3 901,265 + +0.1 901,266 - -0.1 901,278 + -0.1 901,279 - +0.2 901,295 + -1.0 901,295 + -0.1 901,375 + HER17_RS03990 0.29 +0.2 901,376 - HER17_RS03990 0.29 -1.3 901,391 - HER17_RS03990 0.34 -0.6 901,403 + HER17_RS03990 0.37 -0.3 901,404 - HER17_RS03990 0.37 -0.5 901,436 - HER17_RS03990 0.46 -0.3 901,443 + HER17_RS03990 0.48 -1.8 901,443 + HER17_RS03990 0.48 -0.3 901,443 + HER17_RS03990 0.48 -0.2 901,443 + HER17_RS03990 0.48 -0.2 901,443 + HER17_RS03990 0.48 -0.7 901,444 - HER17_RS03990 0.48 -0.2 901,475 + HER17_RS03990 0.57 -0.4 901,516 - HER17_RS03990 0.68 -0.6 901,541 - HER17_RS03990 0.75 +0.2 901,541 - HER17_RS03990 0.75 -0.1 901,546 + HER17_RS03990 0.77 +0.1 901,563 - HER17_RS03990 0.81 -0.7 901,661 + -1.3 901,662 - +0.7 901,703 + +0.1 901,725 + -0.1 901,732 + -0.0 901,746 + +0.0 901,746 + +0.7 901,746 + -0.2 901,747 - -1.5 901,747 - -1.8
Or see this region's nucleotide sequence