Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03970 and HER17_RS03975 are separated by 171 nucleotides HER17_RS03975 and HER17_RS03980 are separated by 474 nucleotides
HER17_RS03970: HER17_RS03970 - hemolysin family protein, at 892,908 to 894,233
_RS03970
HER17_RS03975: HER17_RS03975 - peptide-methionine (S)-S-oxide reductase MsrA, at 894,405 to 895,043
_RS03975
HER17_RS03980: HER17_RS03980 - autotransporter assembly complex protein TamA, at 895,518 to 897,233
_RS03980
Position (kb) 894
895
896 Strain fitness (log2 ratio) -2
-1
0
1
2 at 893.563 kb on + strand, within HER17_RS03970 at 893.659 kb on - strand, within HER17_RS03970 at 893.692 kb on + strand, within HER17_RS03970 at 893.696 kb on + strand, within HER17_RS03970 at 893.696 kb on + strand, within HER17_RS03970 at 893.696 kb on + strand, within HER17_RS03970 at 893.696 kb on + strand, within HER17_RS03970 at 893.696 kb on + strand, within HER17_RS03970 at 893.721 kb on - strand, within HER17_RS03970 at 893.827 kb on - strand, within HER17_RS03970 at 893.827 kb on - strand, within HER17_RS03970 at 893.858 kb on + strand, within HER17_RS03970 at 893.858 kb on + strand, within HER17_RS03970 at 893.859 kb on - strand, within HER17_RS03970 at 893.859 kb on - strand, within HER17_RS03970 at 893.895 kb on - strand, within HER17_RS03970 at 893.913 kb on + strand, within HER17_RS03970 at 893.940 kb on - strand, within HER17_RS03970 at 894.140 kb on + strand at 894.216 kb on + strand at 894.216 kb on + strand at 894.220 kb on - strand at 894.234 kb on - strand at 894.234 kb on - strand at 894.249 kb on + strand at 894.249 kb on + strand at 894.303 kb on + strand at 894.303 kb on + strand at 894.303 kb on + strand at 894.304 kb on - strand at 894.318 kb on + strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.327 kb on + strand at 894.327 kb on + strand at 894.373 kb on + strand at 894.373 kb on + strand at 894.374 kb on - strand at 894.374 kb on - strand at 894.374 kb on - strand at 894.375 kb on + strand at 894.376 kb on - strand at 894.376 kb on - strand at 894.376 kb on - strand at 894.442 kb on - strand at 894.475 kb on + strand, within HER17_RS03975 at 894.476 kb on - strand, within HER17_RS03975 at 894.476 kb on - strand, within HER17_RS03975 at 894.499 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.503 kb on - strand, within HER17_RS03975 at 894.503 kb on - strand, within HER17_RS03975 at 894.503 kb on - strand, within HER17_RS03975 at 894.503 kb on - strand, within HER17_RS03975 at 894.503 kb on - strand, within HER17_RS03975 at 894.623 kb on + strand, within HER17_RS03975 at 894.623 kb on + strand, within HER17_RS03975 at 894.624 kb on - strand, within HER17_RS03975 at 894.624 kb on - strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.629 kb on + strand, within HER17_RS03975 at 894.629 kb on + strand, within HER17_RS03975 at 894.630 kb on - strand, within HER17_RS03975 at 894.630 kb on - strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.814 kb on + strand, within HER17_RS03975 at 894.824 kb on + strand, within HER17_RS03975 at 894.826 kb on + strand, within HER17_RS03975 at 894.827 kb on - strand, within HER17_RS03975 at 894.827 kb on - strand, within HER17_RS03975 at 894.905 kb on + strand, within HER17_RS03975 at 894.906 kb on - strand, within HER17_RS03975 at 894.997 kb on - strand at 895.052 kb on + strand at 895.052 kb on + strand at 895.052 kb on + strand at 895.053 kb on - strand at 895.062 kb on + strand at 895.063 kb on - strand at 895.071 kb on + strand at 895.071 kb on + strand at 895.076 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.123 kb on - strand at 895.123 kb on - strand at 895.123 kb on - strand at 895.124 kb on + strand at 895.125 kb on - strand at 895.139 kb on + strand at 895.139 kb on + strand at 895.140 kb on - strand at 895.146 kb on - strand at 895.146 kb on - strand at 895.150 kb on + strand at 895.150 kb on + strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.157 kb on + strand at 895.203 kb on + strand at 895.204 kb on - strand at 895.223 kb on + strand at 895.223 kb on + strand at 895.223 kb on + strand at 895.230 kb on - strand at 895.232 kb on + strand at 895.233 kb on - strand at 895.289 kb on + strand at 895.289 kb on + strand at 895.324 kb on + strand at 895.324 kb on + strand at 895.336 kb on + strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.338 kb on + strand at 895.338 kb on + strand at 895.338 kb on + strand at 895.339 kb on - strand at 895.339 kb on - strand at 895.346 kb on - strand at 895.346 kb on - strand at 895.377 kb on + strand at 895.377 kb on + strand at 895.377 kb on + strand at 895.378 kb on - strand at 895.396 kb on + strand at 895.397 kb on - strand at 895.472 kb on + strand at 895.532 kb on + strand at 895.532 kb on + strand at 895.532 kb on + strand at 895.533 kb on - strand at 895.533 kb on - strand at 895.597 kb on + strand at 895.597 kb on + strand at 895.621 kb on + strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.625 kb on + strand at 895.625 kb on + strand at 895.626 kb on - strand at 895.626 kb on - strand at 895.626 kb on - strand at 895.716 kb on + strand, within HER17_RS03980 at 895.716 kb on + strand, within HER17_RS03980 at 895.716 kb on + strand, within HER17_RS03980 at 895.860 kb on + strand, within HER17_RS03980 at 895.861 kb on - strand, within HER17_RS03980 at 895.958 kb on - strand, within HER17_RS03980 at 895.968 kb on + strand, within HER17_RS03980
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 893,563 + HER17_RS03970 0.49 -0.5 893,659 - HER17_RS03970 0.57 +0.1 893,692 + HER17_RS03970 0.59 -0.1 893,696 + HER17_RS03970 0.59 +0.1 893,696 + HER17_RS03970 0.59 -0.1 893,696 + HER17_RS03970 0.59 -1.4 893,696 + HER17_RS03970 0.59 +0.4 893,696 + HER17_RS03970 0.59 +0.2 893,721 - HER17_RS03970 0.61 +0.1 893,827 - HER17_RS03970 0.69 -0.2 893,827 - HER17_RS03970 0.69 +0.3 893,858 + HER17_RS03970 0.72 +0.5 893,858 + HER17_RS03970 0.72 -1.2 893,859 - HER17_RS03970 0.72 +0.3 893,859 - HER17_RS03970 0.72 +0.3 893,895 - HER17_RS03970 0.74 +0.4 893,913 + HER17_RS03970 0.76 -1.0 893,940 - HER17_RS03970 0.78 -0.5 894,140 + +0.6 894,216 + -0.0 894,216 + -0.0 894,220 - -0.4 894,234 - -0.5 894,234 - +0.2 894,249 + -0.5 894,249 + -0.1 894,303 + -0.1 894,303 + -0.0 894,303 + +0.3 894,304 - +0.9 894,318 + -0.6 894,319 - -0.0 894,319 - +0.2 894,319 - +0.3 894,319 - +0.4 894,319 - +0.3 894,319 - -0.1 894,319 - -0.9 894,319 - -1.2 894,327 + +0.3 894,327 + -0.1 894,373 + +0.6 894,373 + -0.6 894,374 - -1.3 894,374 - +0.7 894,374 - +0.4 894,375 + +0.4 894,376 - -0.1 894,376 - +0.5 894,376 - +0.6 894,442 - +1.3 894,475 + HER17_RS03975 0.11 +1.1 894,476 - HER17_RS03975 0.11 -1.3 894,476 - HER17_RS03975 0.11 -0.5 894,499 + HER17_RS03975 0.15 +0.5 894,502 + HER17_RS03975 0.15 -1.6 894,502 + HER17_RS03975 0.15 -0.3 894,502 + HER17_RS03975 0.15 -2.4 894,502 + HER17_RS03975 0.15 +0.1 894,502 + HER17_RS03975 0.15 -0.4 894,502 + HER17_RS03975 0.15 -0.5 894,502 + HER17_RS03975 0.15 +0.1 894,503 - HER17_RS03975 0.15 -0.2 894,503 - HER17_RS03975 0.15 -0.2 894,503 - HER17_RS03975 0.15 +0.4 894,503 - HER17_RS03975 0.15 +0.2 894,503 - HER17_RS03975 0.15 +0.1 894,623 + HER17_RS03975 0.34 +1.2 894,623 + HER17_RS03975 0.34 +0.3 894,624 - HER17_RS03975 0.34 +0.8 894,624 - HER17_RS03975 0.34 -0.1 894,625 + HER17_RS03975 0.34 -0.4 894,625 + HER17_RS03975 0.34 -1.7 894,625 + HER17_RS03975 0.34 -0.0 894,625 + HER17_RS03975 0.34 +0.3 894,626 - HER17_RS03975 0.35 +0.2 894,626 - HER17_RS03975 0.35 +0.3 894,626 - HER17_RS03975 0.35 -0.4 894,626 - HER17_RS03975 0.35 +0.6 894,626 - HER17_RS03975 0.35 +0.3 894,629 + HER17_RS03975 0.35 +0.3 894,629 + HER17_RS03975 0.35 -0.7 894,630 - HER17_RS03975 0.35 +0.0 894,630 - HER17_RS03975 0.35 -0.2 894,721 + HER17_RS03975 0.49 -1.0 894,721 + HER17_RS03975 0.49 -0.6 894,721 + HER17_RS03975 0.49 -0.3 894,786 + HER17_RS03975 0.60 +0.2 894,786 + HER17_RS03975 0.60 +0.0 894,786 + HER17_RS03975 0.60 -0.2 894,786 + HER17_RS03975 0.60 +0.3 894,786 + HER17_RS03975 0.60 +0.6 894,787 - HER17_RS03975 0.60 -0.0 894,787 - HER17_RS03975 0.60 -0.2 894,787 - HER17_RS03975 0.60 -0.1 894,814 + HER17_RS03975 0.64 -0.1 894,824 + HER17_RS03975 0.66 +0.0 894,826 + HER17_RS03975 0.66 +0.6 894,827 - HER17_RS03975 0.66 -0.7 894,827 - HER17_RS03975 0.66 -0.6 894,905 + HER17_RS03975 0.78 +0.6 894,906 - HER17_RS03975 0.78 -0.1 894,997 - -0.3 895,052 + -0.5 895,052 + -0.4 895,052 + -1.0 895,053 - +0.1 895,062 + -0.5 895,063 - -0.5 895,071 + +1.1 895,071 + -0.3 895,076 - -0.1 895,098 - +0.4 895,098 - -0.4 895,098 - +0.0 895,098 - +0.1 895,122 + +0.5 895,122 + +0.2 895,122 + -0.8 895,122 + +0.2 895,122 + +0.3 895,122 + -0.4 895,123 - -0.5 895,123 - +0.3 895,123 - +1.8 895,124 + +0.3 895,125 - +0.4 895,139 + +0.6 895,139 + +0.4 895,140 - +1.7 895,146 - -0.7 895,146 - -0.3 895,150 + -0.2 895,150 + +0.7 895,151 - +0.6 895,151 - -0.6 895,151 - -0.4 895,151 - -0.1 895,157 + +0.3 895,203 + +0.8 895,204 - +0.1 895,223 + -0.0 895,223 + -0.6 895,223 + +0.1 895,230 - -0.3 895,232 + +0.1 895,233 - -0.5 895,289 + +0.1 895,289 + -0.8 895,324 + +0.0 895,324 + +1.3 895,336 + +0.5 895,337 - +0.8 895,337 - +0.6 895,337 - -0.6 895,337 - +0.2 895,337 - +0.5 895,337 - +0.6 895,337 - +0.1 895,338 + +0.6 895,338 + +0.0 895,338 + +0.8 895,339 - +0.6 895,339 - -0.1 895,346 - +0.4 895,346 - +0.9 895,377 + +0.2 895,377 + +0.6 895,377 + -0.5 895,378 - +1.4 895,396 + +0.2 895,397 - -0.0 895,472 + +0.3 895,532 + -0.4 895,532 + +1.0 895,532 + -0.1 895,533 - -0.6 895,533 - -0.9 895,597 + +0.4 895,597 + +0.4 895,621 + +0.5 895,622 - +0.1 895,622 - +0.3 895,622 - -0.4 895,622 - +0.2 895,625 + +0.3 895,625 + +0.9 895,626 - -1.5 895,626 - +0.0 895,626 - +0.4 895,716 + HER17_RS03980 0.12 -0.5 895,716 + HER17_RS03980 0.12 +0.6 895,716 + HER17_RS03980 0.12 -0.9 895,860 + HER17_RS03980 0.20 -0.9 895,861 - HER17_RS03980 0.20 +0.2 895,958 - HER17_RS03980 0.26 -0.2 895,968 + HER17_RS03980 0.26 -0.1
Or see this region's nucleotide sequence