Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03395 and HER17_RS03400 are separated by 437 nucleotides HER17_RS03400 and HER17_RS03405 are separated by 11 nucleotides HER17_RS03405 and HER17_RS03410 are separated by 85 nucleotides
HER17_RS03395: HER17_RS03395 - ABC transporter substrate-binding protein, at 772,143 to 773,204
_RS03395
HER17_RS03400: HER17_RS03400 - multidrug efflux SMR transporter, at 773,642 to 773,968
_RS03400
HER17_RS03405: HER17_RS03405 - multidrug efflux SMR transporter, at 773,980 to 774,402
_RS03405
HER17_RS03410: HER17_RS03410 - choline TMA-lyase-activating enzyme, at 774,488 to 775,438
_RS03410
Position (kb) 773
774 Strain fitness (log2 ratio) -2
-1
0
1 at 772.654 kb on + strand, within HER17_RS03395 at 772.654 kb on + strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.661 kb on + strand, within HER17_RS03395 at 772.662 kb on - strand, within HER17_RS03395 at 772.752 kb on + strand, within HER17_RS03395 at 772.752 kb on + strand, within HER17_RS03395 at 772.753 kb on - strand, within HER17_RS03395 at 772.784 kb on + strand, within HER17_RS03395 at 772.784 kb on + strand, within HER17_RS03395 at 772.785 kb on - strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.796 kb on - strand, within HER17_RS03395 at 772.808 kb on + strand, within HER17_RS03395 at 772.809 kb on - strand, within HER17_RS03395 at 772.809 kb on - strand, within HER17_RS03395 at 772.830 kb on + strand, within HER17_RS03395 at 772.831 kb on - strand, within HER17_RS03395 at 772.950 kb on + strand, within HER17_RS03395 at 772.951 kb on - strand, within HER17_RS03395 at 772.951 kb on - strand, within HER17_RS03395 at 772.954 kb on + strand, within HER17_RS03395 at 773.113 kb on - strand at 773.127 kb on + strand at 773.147 kb on + strand at 773.186 kb on + strand at 773.196 kb on - strand at 773.222 kb on + strand at 773.247 kb on + strand at 773.248 kb on - strand at 773.323 kb on - strand at 773.327 kb on + strand at 773.327 kb on + strand at 773.327 kb on + strand at 773.327 kb on + strand at 773.328 kb on - strand at 773.328 kb on - strand at 773.328 kb on - strand at 773.328 kb on - strand at 773.340 kb on + strand at 773.340 kb on + strand at 773.340 kb on + strand at 773.341 kb on - strand at 773.341 kb on - strand at 773.341 kb on - strand at 773.389 kb on - strand at 773.415 kb on - strand at 773.540 kb on - strand at 773.558 kb on - strand at 773.577 kb on - strand at 773.602 kb on + strand at 773.641 kb on - strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.647 kb on + strand at 773.647 kb on + strand at 773.648 kb on - strand at 773.688 kb on - strand, within HER17_RS03400 at 773.688 kb on - strand, within HER17_RS03400 at 773.688 kb on - strand, within HER17_RS03400 at 773.781 kb on - strand, within HER17_RS03400 at 773.808 kb on + strand, within HER17_RS03400 at 773.885 kb on - strand, within HER17_RS03400 at 773.981 kb on + strand at 773.982 kb on - strand at 774.008 kb on - strand at 774.156 kb on + strand, within HER17_RS03405 at 774.274 kb on - strand, within HER17_RS03405 at 774.334 kb on - strand, within HER17_RS03405 at 774.334 kb on - strand, within HER17_RS03405 at 774.364 kb on + strand at 774.365 kb on - strand at 774.367 kb on + strand at 774.367 kb on + strand at 774.367 kb on + strand at 774.402 kb on + strand at 774.402 kb on + strand at 774.403 kb on - strand at 774.405 kb on + strand at 774.405 kb on + strand at 774.405 kb on + strand at 774.406 kb on - strand at 774.406 kb on - strand at 774.419 kb on + strand at 774.420 kb on - strand at 774.420 kb on - strand at 774.463 kb on - strand at 774.470 kb on - strand at 774.476 kb on - strand at 774.477 kb on + strand at 774.477 kb on + strand at 774.478 kb on - strand at 774.478 kb on - strand at 774.565 kb on - strand at 774.565 kb on - strand at 774.589 kb on - strand, within HER17_RS03410 at 774.623 kb on + strand, within HER17_RS03410 at 774.634 kb on - strand, within HER17_RS03410 at 774.641 kb on + strand, within HER17_RS03410 at 774.641 kb on + strand, within HER17_RS03410 at 774.642 kb on - strand, within HER17_RS03410 at 774.656 kb on + strand, within HER17_RS03410 at 774.656 kb on + strand, within HER17_RS03410 at 774.656 kb on + strand, within HER17_RS03410 at 774.657 kb on - strand, within HER17_RS03410 at 774.657 kb on - strand, within HER17_RS03410 at 774.657 kb on - strand, within HER17_RS03410 at 774.658 kb on + strand, within HER17_RS03410 at 774.658 kb on + strand, within HER17_RS03410 at 774.658 kb on + strand, within HER17_RS03410 at 774.659 kb on - strand, within HER17_RS03410 at 774.659 kb on - strand, within HER17_RS03410 at 774.687 kb on + strand, within HER17_RS03410 at 774.687 kb on + strand, within HER17_RS03410 at 774.687 kb on + strand, within HER17_RS03410 at 774.746 kb on - strand, within HER17_RS03410 at 774.799 kb on + strand, within HER17_RS03410 at 774.800 kb on - strand, within HER17_RS03410 at 774.897 kb on + strand, within HER17_RS03410 at 774.937 kb on + strand, within HER17_RS03410 at 774.938 kb on - strand, within HER17_RS03410 at 774.941 kb on - strand, within HER17_RS03410 at 774.941 kb on - strand, within HER17_RS03410
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 772,654 + HER17_RS03395 0.48 -2.4 772,654 + HER17_RS03395 0.48 +0.3 772,655 - HER17_RS03395 0.48 +0.6 772,655 - HER17_RS03395 0.48 +0.3 772,655 - HER17_RS03395 0.48 +0.0 772,661 + HER17_RS03395 0.49 +0.0 772,662 - HER17_RS03395 0.49 -0.1 772,752 + HER17_RS03395 0.57 -0.1 772,752 + HER17_RS03395 0.57 +0.0 772,753 - HER17_RS03395 0.57 +0.2 772,784 + HER17_RS03395 0.60 -1.7 772,784 + HER17_RS03395 0.60 -0.8 772,785 - HER17_RS03395 0.60 -0.2 772,795 + HER17_RS03395 0.61 -0.7 772,795 + HER17_RS03395 0.61 +0.0 772,795 + HER17_RS03395 0.61 -1.1 772,795 + HER17_RS03395 0.61 +0.2 772,796 - HER17_RS03395 0.61 +0.4 772,808 + HER17_RS03395 0.63 +0.7 772,809 - HER17_RS03395 0.63 +0.5 772,809 - HER17_RS03395 0.63 +1.6 772,830 + HER17_RS03395 0.65 -1.6 772,831 - HER17_RS03395 0.65 -0.2 772,950 + HER17_RS03395 0.76 -1.2 772,951 - HER17_RS03395 0.76 -0.2 772,951 - HER17_RS03395 0.76 -0.1 772,954 + HER17_RS03395 0.76 +0.6 773,113 - +0.4 773,127 + +0.6 773,147 + +0.4 773,186 + -1.2 773,196 - +0.1 773,222 + +1.7 773,247 + -0.4 773,248 - -0.1 773,323 - +0.9 773,327 + -0.6 773,327 + +0.6 773,327 + +0.2 773,327 + -0.4 773,328 - +0.1 773,328 - +0.1 773,328 - -0.3 773,328 - -0.5 773,340 + -0.5 773,340 + +0.3 773,340 + +0.7 773,341 - +1.0 773,341 - +0.2 773,341 - +0.0 773,389 - +0.2 773,415 - +0.2 773,540 - -0.8 773,558 - -2.0 773,577 - +0.1 773,602 + +0.4 773,641 - -0.3 773,643 + -0.5 773,643 + -0.2 773,643 + +1.0 773,643 + +0.4 773,643 + -0.4 773,647 + +0.3 773,647 + -0.2 773,648 - -0.4 773,688 - HER17_RS03400 0.14 -0.0 773,688 - HER17_RS03400 0.14 -0.4 773,688 - HER17_RS03400 0.14 +0.4 773,781 - HER17_RS03400 0.43 +0.4 773,808 + HER17_RS03400 0.51 -0.3 773,885 - HER17_RS03400 0.74 -0.2 773,981 + -0.5 773,982 - -1.4 774,008 - -0.3 774,156 + HER17_RS03405 0.42 +0.3 774,274 - HER17_RS03405 0.70 +0.4 774,334 - HER17_RS03405 0.84 -0.8 774,334 - HER17_RS03405 0.84 -0.3 774,364 + +0.2 774,365 - +0.4 774,367 + +0.7 774,367 + +0.4 774,367 + -0.2 774,402 + -0.5 774,402 + +0.7 774,403 - -0.4 774,405 + +1.1 774,405 + -0.0 774,405 + -0.2 774,406 - +0.1 774,406 - -1.1 774,419 + -0.0 774,420 - -0.0 774,420 - -0.2 774,463 - -0.1 774,470 - -0.0 774,476 - +0.3 774,477 + -0.2 774,477 + +0.7 774,478 - -1.2 774,478 - +1.1 774,565 - -0.3 774,565 - -0.5 774,589 - HER17_RS03410 0.11 +0.4 774,623 + HER17_RS03410 0.14 +0.4 774,634 - HER17_RS03410 0.15 -0.1 774,641 + HER17_RS03410 0.16 -0.3 774,641 + HER17_RS03410 0.16 -0.4 774,642 - HER17_RS03410 0.16 -0.1 774,656 + HER17_RS03410 0.18 +1.0 774,656 + HER17_RS03410 0.18 +0.4 774,656 + HER17_RS03410 0.18 +0.2 774,657 - HER17_RS03410 0.18 +0.0 774,657 - HER17_RS03410 0.18 +0.2 774,657 - HER17_RS03410 0.18 -0.1 774,658 + HER17_RS03410 0.18 -0.2 774,658 + HER17_RS03410 0.18 -0.3 774,658 + HER17_RS03410 0.18 +0.1 774,659 - HER17_RS03410 0.18 -0.8 774,659 - HER17_RS03410 0.18 +0.4 774,687 + HER17_RS03410 0.21 -1.0 774,687 + HER17_RS03410 0.21 +0.2 774,687 + HER17_RS03410 0.21 +0.2 774,746 - HER17_RS03410 0.27 +1.0 774,799 + HER17_RS03410 0.33 +0.2 774,800 - HER17_RS03410 0.33 +0.2 774,897 + HER17_RS03410 0.43 -1.0 774,937 + HER17_RS03410 0.47 +0.7 774,938 - HER17_RS03410 0.47 +0.2 774,941 - HER17_RS03410 0.48 -0.0 774,941 - HER17_RS03410 0.48 -0.4
Or see this region's nucleotide sequence