Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03185 and HER17_RS03190 are separated by 104 nucleotides HER17_RS03190 and HER17_RS03195 are separated by 18 nucleotides HER17_RS03195 and HER17_RS03200 are separated by 26 nucleotides
HER17_RS03185: HER17_RS03185 - cell division protein FtsZ, at 720,652 to 721,803
_RS03185
HER17_RS03190: HER17_RS03190 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 721,908 to 722,825
_RS03190
HER17_RS03195: HER17_RS03195 - DUF721 domain-containing protein, at 722,844 to 723,371
_RS03195
HER17_RS03200: HER17_RS03200 - secA translation cis-regulator SecM, at 723,398 to 723,913
_RS03200
Position (kb) 721
722
723 Strain fitness (log2 ratio) -2
-1
0
1
2 at 721.817 kb on - strand at 722.798 kb on + strand at 722.841 kb on + strand at 722.842 kb on - strand at 722.852 kb on + strand at 722.853 kb on - strand at 722.853 kb on - strand at 722.856 kb on - strand at 722.868 kb on - strand at 722.904 kb on + strand, within HER17_RS03195 at 722.905 kb on - strand, within HER17_RS03195 at 722.908 kb on - strand, within HER17_RS03195 at 722.908 kb on - strand, within HER17_RS03195 at 722.999 kb on + strand, within HER17_RS03195 at 723.000 kb on - strand, within HER17_RS03195 at 723.023 kb on + strand, within HER17_RS03195 at 723.371 kb on + strand at 723.371 kb on + strand at 723.371 kb on + strand at 723.393 kb on + strand at 723.406 kb on + strand at 723.459 kb on + strand, within HER17_RS03200 at 723.567 kb on + strand, within HER17_RS03200 at 723.623 kb on + strand, within HER17_RS03200
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 721,817 - +0.2 722,798 + +0.6 722,841 + +0.2 722,842 - +0.8 722,852 + -1.9 722,853 - -0.7 722,853 - -1.2 722,856 - -2.0 722,868 - -0.5 722,904 + HER17_RS03195 0.11 -0.1 722,905 - HER17_RS03195 0.12 -0.2 722,908 - HER17_RS03195 0.12 -0.3 722,908 - HER17_RS03195 0.12 +1.8 722,999 + HER17_RS03195 0.29 +0.3 723,000 - HER17_RS03195 0.30 -0.1 723,023 + HER17_RS03195 0.34 +0.5 723,371 + -0.1 723,371 + +0.0 723,371 + +0.2 723,393 + -0.6 723,406 + +0.5 723,459 + HER17_RS03200 0.12 +0.8 723,567 + HER17_RS03200 0.33 -1.5 723,623 + HER17_RS03200 0.44 -0.2
Or see this region's nucleotide sequence