Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS02295

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS02290 and HER17_RS02295 are separated by 31 nucleotidesHER17_RS02295 and HER17_RS02300 are separated by 48 nucleotides HER17_RS02290: HER17_RS02290 - malate synthase A, at 507,110 to 508,708 _RS02290 HER17_RS02295: HER17_RS02295 - isocitrate lyase, at 508,740 to 510,047 _RS02295 HER17_RS02300: HER17_RS02300 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 510,096 to 511,871 _RS02300 Position (kb) 508 509 510 511Strain fitness (log2 ratio) -2 -1 0 1 2at 507.893 kb on + strand, within HER17_RS02290at 507.900 kb on + strand, within HER17_RS02290at 507.910 kb on + strand, within HER17_RS02290at 507.911 kb on - strand, within HER17_RS02290at 507.911 kb on - strand, within HER17_RS02290at 507.911 kb on - strand, within HER17_RS02290at 507.941 kb on + strand, within HER17_RS02290at 507.942 kb on - strand, within HER17_RS02290at 507.953 kb on + strand, within HER17_RS02290at 507.954 kb on - strand, within HER17_RS02290at 507.966 kb on + strand, within HER17_RS02290at 508.152 kb on + strand, within HER17_RS02290at 508.152 kb on + strand, within HER17_RS02290at 508.152 kb on + strand, within HER17_RS02290at 508.153 kb on - strand, within HER17_RS02290at 508.153 kb on - strand, within HER17_RS02290at 508.156 kb on + strand, within HER17_RS02290at 508.156 kb on + strand, within HER17_RS02290at 508.157 kb on - strand, within HER17_RS02290at 508.157 kb on - strand, within HER17_RS02290at 508.157 kb on - strand, within HER17_RS02290at 508.157 kb on - strand, within HER17_RS02290at 508.157 kb on - strand, within HER17_RS02290at 508.254 kb on + strand, within HER17_RS02290at 508.254 kb on + strand, within HER17_RS02290at 508.323 kb on + strand, within HER17_RS02290at 508.323 kb on + strand, within HER17_RS02290at 508.324 kb on - strand, within HER17_RS02290at 508.324 kb on - strand, within HER17_RS02290at 508.389 kb on - strand, within HER17_RS02290at 508.389 kb on - strand, within HER17_RS02290at 508.389 kb on - strand, within HER17_RS02290at 508.706 kb on + strandat 508.720 kb on - strandat 508.722 kb on + strandat 508.723 kb on - strandat 508.723 kb on - strandat 508.811 kb on + strandat 508.811 kb on + strandat 508.811 kb on + strandat 508.811 kb on + strandat 508.811 kb on + strandat 508.812 kb on - strandat 508.812 kb on - strandat 508.822 kb on - strandat 508.935 kb on + strand, within HER17_RS02295at 508.936 kb on - strand, within HER17_RS02295at 508.940 kb on + strand, within HER17_RS02295at 508.941 kb on - strand, within HER17_RS02295at 508.941 kb on - strand, within HER17_RS02295at 508.975 kb on + strand, within HER17_RS02295at 508.975 kb on + strand, within HER17_RS02295at 508.976 kb on - strand, within HER17_RS02295at 509.008 kb on - strand, within HER17_RS02295at 509.058 kb on + strand, within HER17_RS02295at 509.058 kb on + strand, within HER17_RS02295at 509.058 kb on + strand, within HER17_RS02295at 509.059 kb on - strand, within HER17_RS02295at 509.059 kb on - strand, within HER17_RS02295at 509.077 kb on - strand, within HER17_RS02295at 509.093 kb on - strand, within HER17_RS02295at 509.174 kb on + strand, within HER17_RS02295at 509.174 kb on + strand, within HER17_RS02295at 509.175 kb on - strand, within HER17_RS02295at 509.181 kb on + strand, within HER17_RS02295at 509.181 kb on + strand, within HER17_RS02295at 509.183 kb on + strand, within HER17_RS02295at 509.183 kb on + strand, within HER17_RS02295at 509.184 kb on - strand, within HER17_RS02295at 509.184 kb on - strand, within HER17_RS02295at 509.240 kb on + strand, within HER17_RS02295at 509.241 kb on - strand, within HER17_RS02295at 509.347 kb on + strand, within HER17_RS02295at 509.347 kb on + strand, within HER17_RS02295at 509.425 kb on + strand, within HER17_RS02295at 509.426 kb on - strand, within HER17_RS02295at 509.484 kb on + strand, within HER17_RS02295at 509.484 kb on + strand, within HER17_RS02295at 509.484 kb on + strand, within HER17_RS02295at 509.485 kb on - strand, within HER17_RS02295at 509.534 kb on + strand, within HER17_RS02295at 509.577 kb on + strand, within HER17_RS02295at 509.577 kb on + strand, within HER17_RS02295at 509.577 kb on + strand, within HER17_RS02295at 509.578 kb on - strand, within HER17_RS02295at 509.586 kb on + strand, within HER17_RS02295at 509.626 kb on + strand, within HER17_RS02295at 509.688 kb on + strand, within HER17_RS02295at 509.688 kb on + strand, within HER17_RS02295at 509.689 kb on - strand, within HER17_RS02295at 509.709 kb on - strand, within HER17_RS02295at 509.709 kb on - strand, within HER17_RS02295at 509.775 kb on + strand, within HER17_RS02295at 509.848 kb on - strand, within HER17_RS02295at 509.913 kb on - strand, within HER17_RS02295at 509.922 kb on + strandat 509.924 kb on + strandat 509.962 kb on - strandat 509.969 kb on + strandat 510.156 kb on + strandat 510.245 kb on + strandat 510.253 kb on + strandat 510.253 kb on + strandat 510.253 kb on + strandat 510.254 kb on - strandat 510.254 kb on - strandat 510.255 kb on + strandat 510.255 kb on + strandat 510.256 kb on - strandat 510.256 kb on - strandat 510.296 kb on + strand, within HER17_RS02300at 510.296 kb on + strand, within HER17_RS02300at 510.296 kb on + strand, within HER17_RS02300at 510.297 kb on - strand, within HER17_RS02300at 510.297 kb on - strand, within HER17_RS02300at 510.347 kb on + strand, within HER17_RS02300at 510.347 kb on + strand, within HER17_RS02300at 510.347 kb on + strand, within HER17_RS02300at 510.347 kb on + strand, within HER17_RS02300at 510.348 kb on - strand, within HER17_RS02300at 510.348 kb on - strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.352 kb on - strand, within HER17_RS02300at 510.352 kb on - strand, within HER17_RS02300at 510.352 kb on - strand, within HER17_RS02300at 510.362 kb on - strand, within HER17_RS02300at 510.428 kb on + strand, within HER17_RS02300at 510.618 kb on + strand, within HER17_RS02300at 510.618 kb on + strand, within HER17_RS02300at 510.619 kb on - strand, within HER17_RS02300at 510.619 kb on - strand, within HER17_RS02300at 510.619 kb on - strand, within HER17_RS02300at 510.621 kb on - strand, within HER17_RS02300at 510.630 kb on + strand, within HER17_RS02300at 510.630 kb on + strand, within HER17_RS02300at 510.630 kb on + strand, within HER17_RS02300at 510.634 kb on + strand, within HER17_RS02300at 510.635 kb on - strand, within HER17_RS02300at 510.677 kb on - strand, within HER17_RS02300at 510.797 kb on - strand, within HER17_RS02300at 510.797 kb on - strand, within HER17_RS02300at 510.797 kb on - strand, within HER17_RS02300at 510.800 kb on + strand, within HER17_RS02300at 510.807 kb on - strand, within HER17_RS02300at 510.807 kb on - strand, within HER17_RS02300at 510.873 kb on + strand, within HER17_RS02300at 510.873 kb on + strand, within HER17_RS02300at 510.873 kb on + strand, within HER17_RS02300at 510.874 kb on - strand, within HER17_RS02300at 510.874 kb on - strand, within HER17_RS02300at 510.874 kb on - strand, within HER17_RS02300at 510.974 kb on + strand, within HER17_RS02300at 510.974 kb on + strand, within HER17_RS02300at 510.975 kb on - strand, within HER17_RS02300at 510.975 kb on - strand, within HER17_RS02300at 510.975 kb on - strand, within HER17_RS02300at 510.985 kb on - strand, within HER17_RS02300at 511.005 kb on + strand, within HER17_RS02300at 511.006 kb on - strand, within HER17_RS02300at 511.031 kb on + strand, within HER17_RS02300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
507,893 + HER17_RS02290 0.49 -0.2
507,900 + HER17_RS02290 0.49 -0.7
507,910 + HER17_RS02290 0.50 -0.7
507,911 - HER17_RS02290 0.50 -0.0
507,911 - HER17_RS02290 0.50 +0.1
507,911 - HER17_RS02290 0.50 -0.5
507,941 + HER17_RS02290 0.52 -0.1
507,942 - HER17_RS02290 0.52 +0.4
507,953 + HER17_RS02290 0.53 -0.3
507,954 - HER17_RS02290 0.53 +1.4
507,966 + HER17_RS02290 0.54 -0.1
508,152 + HER17_RS02290 0.65 +0.8
508,152 + HER17_RS02290 0.65 -0.1
508,152 + HER17_RS02290 0.65 -0.1
508,153 - HER17_RS02290 0.65 -0.8
508,153 - HER17_RS02290 0.65 +0.4
508,156 + HER17_RS02290 0.65 -0.1
508,156 + HER17_RS02290 0.65 +0.7
508,157 - HER17_RS02290 0.65 +0.6
508,157 - HER17_RS02290 0.65 +0.4
508,157 - HER17_RS02290 0.65 +0.0
508,157 - HER17_RS02290 0.65 -0.0
508,157 - HER17_RS02290 0.65 -0.2
508,254 + HER17_RS02290 0.72 -0.3
508,254 + HER17_RS02290 0.72 -0.3
508,323 + HER17_RS02290 0.76 -0.5
508,323 + HER17_RS02290 0.76 -0.3
508,324 - HER17_RS02290 0.76 -0.5
508,324 - HER17_RS02290 0.76 +0.6
508,389 - HER17_RS02290 0.80 -0.9
508,389 - HER17_RS02290 0.80 +0.4
508,389 - HER17_RS02290 0.80 -0.3
508,706 + -0.8
508,720 - +0.2
508,722 + -0.4
508,723 - +0.3
508,723 - -1.2
508,811 + -2.0
508,811 + -1.4
508,811 + -0.1
508,811 + +0.0
508,811 + +0.6
508,812 - +1.1
508,812 - +0.7
508,822 - -0.6
508,935 + HER17_RS02295 0.15 +0.1
508,936 - HER17_RS02295 0.15 -0.4
508,940 + HER17_RS02295 0.15 +0.1
508,941 - HER17_RS02295 0.15 +0.4
508,941 - HER17_RS02295 0.15 -0.3
508,975 + HER17_RS02295 0.18 +0.6
508,975 + HER17_RS02295 0.18 -2.4
508,976 - HER17_RS02295 0.18 -0.9
509,008 - HER17_RS02295 0.20 +0.1
509,058 + HER17_RS02295 0.24 +0.3
509,058 + HER17_RS02295 0.24 +1.3
509,058 + HER17_RS02295 0.24 -0.7
509,059 - HER17_RS02295 0.24 +0.2
509,059 - HER17_RS02295 0.24 -1.4
509,077 - HER17_RS02295 0.26 -0.2
509,093 - HER17_RS02295 0.27 +0.6
509,174 + HER17_RS02295 0.33 +0.2
509,174 + HER17_RS02295 0.33 -0.2
509,175 - HER17_RS02295 0.33 -0.2
509,181 + HER17_RS02295 0.34 -0.0
509,181 + HER17_RS02295 0.34 +0.6
509,183 + HER17_RS02295 0.34 -0.2
509,183 + HER17_RS02295 0.34 +1.3
509,184 - HER17_RS02295 0.34 -0.3
509,184 - HER17_RS02295 0.34 -0.1
509,240 + HER17_RS02295 0.38 +0.3
509,241 - HER17_RS02295 0.38 -0.1
509,347 + HER17_RS02295 0.46 -0.7
509,347 + HER17_RS02295 0.46 -1.4
509,425 + HER17_RS02295 0.52 +0.0
509,426 - HER17_RS02295 0.52 +0.1
509,484 + HER17_RS02295 0.57 -0.3
509,484 + HER17_RS02295 0.57 +0.3
509,484 + HER17_RS02295 0.57 -0.9
509,485 - HER17_RS02295 0.57 -0.4
509,534 + HER17_RS02295 0.61 -0.8
509,577 + HER17_RS02295 0.64 -0.4
509,577 + HER17_RS02295 0.64 +0.5
509,577 + HER17_RS02295 0.64 -2.4
509,578 - HER17_RS02295 0.64 +0.2
509,586 + HER17_RS02295 0.65 +0.2
509,626 + HER17_RS02295 0.68 -0.1
509,688 + HER17_RS02295 0.72 +1.0
509,688 + HER17_RS02295 0.72 +0.4
509,689 - HER17_RS02295 0.73 +1.1
509,709 - HER17_RS02295 0.74 +0.1
509,709 - HER17_RS02295 0.74 +0.4
509,775 + HER17_RS02295 0.79 -0.0
509,848 - HER17_RS02295 0.85 +0.7
509,913 - HER17_RS02295 0.90 +0.4
509,922 + -0.2
509,924 + +0.4
509,962 - +1.1
509,969 + +0.1
510,156 + +0.2
510,245 + -0.1
510,253 + +0.5
510,253 + -0.8
510,253 + +0.5
510,254 - -0.0
510,254 - -0.0
510,255 + +0.3
510,255 + -0.2
510,256 - +0.1
510,256 - +1.4
510,296 + HER17_RS02300 0.11 +0.1
510,296 + HER17_RS02300 0.11 +0.1
510,296 + HER17_RS02300 0.11 -0.1
510,297 - HER17_RS02300 0.11 -0.7
510,297 - HER17_RS02300 0.11 -0.8
510,347 + HER17_RS02300 0.14 -0.4
510,347 + HER17_RS02300 0.14 +0.1
510,347 + HER17_RS02300 0.14 -0.0
510,347 + HER17_RS02300 0.14 +0.7
510,348 - HER17_RS02300 0.14 +0.1
510,348 - HER17_RS02300 0.14 +0.4
510,351 + HER17_RS02300 0.14 +0.5
510,351 + HER17_RS02300 0.14 +0.2
510,351 + HER17_RS02300 0.14 +0.6
510,351 + HER17_RS02300 0.14 +0.1
510,351 + HER17_RS02300 0.14 +0.3
510,351 + HER17_RS02300 0.14 +0.4
510,351 + HER17_RS02300 0.14 -1.1
510,351 + HER17_RS02300 0.14 +0.7
510,352 - HER17_RS02300 0.14 +0.4
510,352 - HER17_RS02300 0.14 -0.4
510,352 - HER17_RS02300 0.14 +0.0
510,362 - HER17_RS02300 0.15 +0.5
510,428 + HER17_RS02300 0.19 +0.1
510,618 + HER17_RS02300 0.29 +0.2
510,618 + HER17_RS02300 0.29 -0.1
510,619 - HER17_RS02300 0.29 -1.1
510,619 - HER17_RS02300 0.29 +1.2
510,619 - HER17_RS02300 0.29 -0.5
510,621 - HER17_RS02300 0.30 +0.2
510,630 + HER17_RS02300 0.30 +1.2
510,630 + HER17_RS02300 0.30 +0.5
510,630 + HER17_RS02300 0.30 -0.3
510,634 + HER17_RS02300 0.30 -0.4
510,635 - HER17_RS02300 0.30 +0.1
510,677 - HER17_RS02300 0.33 +2.1
510,797 - HER17_RS02300 0.39 -1.4
510,797 - HER17_RS02300 0.39 -0.4
510,797 - HER17_RS02300 0.39 +0.3
510,800 + HER17_RS02300 0.40 -0.1
510,807 - HER17_RS02300 0.40 +0.1
510,807 - HER17_RS02300 0.40 +0.1
510,873 + HER17_RS02300 0.44 -0.7
510,873 + HER17_RS02300 0.44 +1.0
510,873 + HER17_RS02300 0.44 +0.4
510,874 - HER17_RS02300 0.44 -0.1
510,874 - HER17_RS02300 0.44 -1.3
510,874 - HER17_RS02300 0.44 -1.0
510,974 + HER17_RS02300 0.49 +0.0
510,974 + HER17_RS02300 0.49 +0.8
510,975 - HER17_RS02300 0.49 +1.0
510,975 - HER17_RS02300 0.49 -0.0
510,975 - HER17_RS02300 0.49 -0.2
510,985 - HER17_RS02300 0.50 +0.1
511,005 + HER17_RS02300 0.51 +0.5
511,006 - HER17_RS02300 0.51 -0.0
511,031 + HER17_RS02300 0.53 -0.1

Or see this region's nucleotide sequence