Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02215 and HER17_RS02220 are separated by 67 nucleotides HER17_RS02220 and HER17_RS02225 are separated by 23 nucleotides HER17_RS02225 and HER17_RS02230 are separated by 128 nucleotides
HER17_RS02215: HER17_RS02215 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 492,702 to 493,991
_RS02215
HER17_RS02220: HER17_RS02220 - methionyl-tRNA formyltransferase, at 494,059 to 495,006
_RS02220
HER17_RS02225: HER17_RS02225 - peptide deformylase, at 495,030 to 495,542
_RS02225
HER17_RS02230: HER17_RS02230 - DNA-protecting protein DprA, at 495,671 to 496,792
_RS02230
Position (kb) 494
495
496 Strain fitness (log2 ratio) -2
-1
0
1
2 at 493.095 kb on + strand, within HER17_RS02215 at 493.158 kb on + strand, within HER17_RS02215 at 493.158 kb on + strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.174 kb on - strand, within HER17_RS02215 at 493.174 kb on - strand, within HER17_RS02215 at 493.202 kb on + strand, within HER17_RS02215 at 493.203 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.378 kb on + strand, within HER17_RS02215 at 493.413 kb on + strand, within HER17_RS02215 at 493.414 kb on - strand, within HER17_RS02215 at 493.414 kb on - strand, within HER17_RS02215 at 493.416 kb on + strand, within HER17_RS02215 at 493.416 kb on + strand, within HER17_RS02215 at 493.417 kb on - strand, within HER17_RS02215 at 493.417 kb on - strand, within HER17_RS02215 at 493.429 kb on + strand, within HER17_RS02215 at 493.429 kb on + strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.464 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.503 kb on - strand, within HER17_RS02215 at 493.503 kb on - strand, within HER17_RS02215 at 493.626 kb on + strand, within HER17_RS02215 at 493.626 kb on + strand, within HER17_RS02215 at 493.629 kb on + strand, within HER17_RS02215 at 493.630 kb on - strand, within HER17_RS02215 at 493.683 kb on + strand, within HER17_RS02215 at 493.721 kb on + strand, within HER17_RS02215 at 493.723 kb on + strand, within HER17_RS02215 at 493.736 kb on - strand, within HER17_RS02215 at 493.756 kb on + strand, within HER17_RS02215 at 493.757 kb on - strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.790 kb on + strand, within HER17_RS02215 at 493.791 kb on - strand, within HER17_RS02215 at 493.808 kb on + strand, within HER17_RS02215 at 493.836 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.905 kb on + strand at 493.905 kb on + strand at 493.905 kb on + strand at 493.906 kb on - strand at 493.908 kb on + strand at 493.909 kb on - strand at 493.909 kb on - strand at 493.964 kb on + strand at 493.965 kb on - strand at 493.965 kb on - strand at 493.971 kb on + strand at 493.972 kb on - strand at 493.972 kb on - strand at 493.978 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.009 kb on + strand at 494.009 kb on + strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.013 kb on + strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.027 kb on + strand at 494.028 kb on - strand at 494.028 kb on - strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.060 kb on + strand at 494.060 kb on + strand at 494.061 kb on - strand at 494.070 kb on + strand at 494.071 kb on - strand at 495.093 kb on - strand, within HER17_RS02225 at 495.093 kb on - strand, within HER17_RS02225 at 495.559 kb on - strand at 495.641 kb on + strand at 495.641 kb on + strand at 495.659 kb on + strand at 495.697 kb on + strand at 495.697 kb on + strand at 495.697 kb on + strand at 495.697 kb on + strand at 495.698 kb on - strand at 495.709 kb on - strand at 495.754 kb on + strand at 495.817 kb on - strand, within HER17_RS02230 at 495.817 kb on - strand, within HER17_RS02230 at 495.817 kb on - strand, within HER17_RS02230 at 495.829 kb on + strand, within HER17_RS02230 at 495.830 kb on - strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.833 kb on + strand, within HER17_RS02230 at 495.834 kb on - strand, within HER17_RS02230 at 495.834 kb on - strand, within HER17_RS02230 at 495.834 kb on - strand, within HER17_RS02230 at 495.834 kb on - strand, within HER17_RS02230 at 495.834 kb on - strand, within HER17_RS02230 at 495.841 kb on + strand, within HER17_RS02230 at 495.841 kb on + strand, within HER17_RS02230 at 495.842 kb on - strand, within HER17_RS02230 at 495.876 kb on - strand, within HER17_RS02230 at 495.889 kb on + strand, within HER17_RS02230 at 495.889 kb on + strand, within HER17_RS02230 at 495.999 kb on + strand, within HER17_RS02230 at 496.000 kb on - strand, within HER17_RS02230
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 493,095 + HER17_RS02215 0.30 +0.7 493,158 + HER17_RS02215 0.35 +0.1 493,158 + HER17_RS02215 0.35 +0.0 493,159 - HER17_RS02215 0.35 -0.5 493,159 - HER17_RS02215 0.35 +0.2 493,159 - HER17_RS02215 0.35 -0.1 493,159 - HER17_RS02215 0.35 +0.2 493,159 - HER17_RS02215 0.35 +0.4 493,174 - HER17_RS02215 0.37 -0.7 493,174 - HER17_RS02215 0.37 -0.1 493,202 + HER17_RS02215 0.39 -0.3 493,203 - HER17_RS02215 0.39 +0.9 493,303 - HER17_RS02215 0.47 +1.1 493,303 - HER17_RS02215 0.47 -0.1 493,303 - HER17_RS02215 0.47 +0.4 493,378 + HER17_RS02215 0.52 +0.3 493,413 + HER17_RS02215 0.55 -0.3 493,414 - HER17_RS02215 0.55 -0.0 493,414 - HER17_RS02215 0.55 -0.4 493,416 + HER17_RS02215 0.55 +0.5 493,416 + HER17_RS02215 0.55 +0.3 493,417 - HER17_RS02215 0.55 -0.4 493,417 - HER17_RS02215 0.55 -0.7 493,429 + HER17_RS02215 0.56 -0.4 493,429 + HER17_RS02215 0.56 -0.3 493,430 - HER17_RS02215 0.56 -0.9 493,430 - HER17_RS02215 0.56 +0.8 493,430 - HER17_RS02215 0.56 +0.2 493,464 + HER17_RS02215 0.59 +0.0 493,502 + HER17_RS02215 0.62 -0.4 493,502 + HER17_RS02215 0.62 +0.1 493,502 + HER17_RS02215 0.62 -0.5 493,503 - HER17_RS02215 0.62 +0.2 493,503 - HER17_RS02215 0.62 +0.5 493,626 + HER17_RS02215 0.72 +0.4 493,626 + HER17_RS02215 0.72 +0.5 493,629 + HER17_RS02215 0.72 -0.0 493,630 - HER17_RS02215 0.72 -0.2 493,683 + HER17_RS02215 0.76 -0.6 493,721 + HER17_RS02215 0.79 -0.7 493,723 + HER17_RS02215 0.79 -0.6 493,736 - HER17_RS02215 0.80 +0.4 493,756 + HER17_RS02215 0.82 +1.0 493,757 - HER17_RS02215 0.82 +0.4 493,775 + HER17_RS02215 0.83 -0.2 493,775 + HER17_RS02215 0.83 +0.6 493,775 + HER17_RS02215 0.83 -0.4 493,790 + HER17_RS02215 0.84 +0.1 493,791 - HER17_RS02215 0.84 -0.2 493,808 + HER17_RS02215 0.86 +0.1 493,836 + HER17_RS02215 0.88 +0.6 493,839 + HER17_RS02215 0.88 -1.2 493,839 + HER17_RS02215 0.88 -0.5 493,839 + HER17_RS02215 0.88 -1.8 493,905 + -0.7 493,905 + -0.1 493,905 + +0.2 493,906 - -0.5 493,908 + -0.0 493,909 - -0.7 493,909 - -0.1 493,964 + +0.3 493,965 - +1.3 493,965 - -0.9 493,971 + -0.6 493,972 - -0.3 493,972 - +0.8 493,978 + -1.4 494,007 + -0.8 494,007 + +0.0 494,007 + +0.1 494,007 + +0.1 494,007 + -0.8 494,007 + +0.1 494,007 + +1.2 494,007 + -1.2 494,008 - -0.4 494,008 - -1.1 494,008 - +0.3 494,008 - -0.2 494,008 - +0.2 494,009 + -0.0 494,009 + -0.3 494,010 - +0.2 494,010 - -0.1 494,010 - +0.5 494,010 - +0.0 494,010 - +0.0 494,013 + -1.0 494,014 - +0.1 494,014 - -1.6 494,014 - +0.2 494,014 - +0.3 494,027 + -0.1 494,028 - +0.0 494,028 - -0.5 494,029 + -1.4 494,029 + -0.2 494,029 + -0.0 494,029 + -1.8 494,060 + -0.3 494,060 + -0.1 494,061 - +0.1 494,070 + -0.6 494,071 - +0.3 495,093 - HER17_RS02225 0.12 -0.5 495,093 - HER17_RS02225 0.12 +1.9 495,559 - -0.4 495,641 + +1.4 495,641 + -0.9 495,659 + -0.1 495,697 + +0.5 495,697 + -0.4 495,697 + -0.0 495,697 + +0.9 495,698 - +0.2 495,709 - -0.3 495,754 + -0.3 495,817 - HER17_RS02230 0.13 -0.2 495,817 - HER17_RS02230 0.13 +0.1 495,817 - HER17_RS02230 0.13 -0.2 495,829 + HER17_RS02230 0.14 -0.1 495,830 - HER17_RS02230 0.14 -0.9 495,833 + HER17_RS02230 0.14 -0.1 495,833 + HER17_RS02230 0.14 +0.8 495,833 + HER17_RS02230 0.14 -0.6 495,833 + HER17_RS02230 0.14 +0.3 495,833 + HER17_RS02230 0.14 -1.4 495,833 + HER17_RS02230 0.14 -0.0 495,834 - HER17_RS02230 0.15 -0.4 495,834 - HER17_RS02230 0.15 +0.2 495,834 - HER17_RS02230 0.15 +0.8 495,834 - HER17_RS02230 0.15 +0.2 495,834 - HER17_RS02230 0.15 -0.3 495,841 + HER17_RS02230 0.15 -0.7 495,841 + HER17_RS02230 0.15 -0.4 495,842 - HER17_RS02230 0.15 -0.8 495,876 - HER17_RS02230 0.18 +0.1 495,889 + HER17_RS02230 0.19 +0.1 495,889 + HER17_RS02230 0.19 +0.7 495,999 + HER17_RS02230 0.29 +0.4 496,000 - HER17_RS02230 0.29 +0.6
Or see this region's nucleotide sequence