Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02190 and HER17_RS02195 are separated by 40 nucleotides HER17_RS02195 and HER17_RS02200 are separated by 207 nucleotides HER17_RS02200 and HER17_RS02205 are separated by 27 nucleotides HER17_RS02205 and HER17_RS02210 are separated by 91 nucleotides
HER17_RS02190: HER17_RS02190 - DNA-directed RNA polymerase subunit alpha, at 488,891 to 489,880
_RS02190
HER17_RS02195: HER17_RS02195 - 50S ribosomal protein L17, at 489,921 to 490,313
_RS02195
HER17_RS02200: HER17_RS02200 - alternative ribosome-rescue factor A, at 490,521 to 490,736
_RS02200
HER17_RS02205: HER17_RS02205 - large-conductance mechanosensitive channel protein MscL, at 490,764 to 491,177
_RS02205
HER17_RS02210: HER17_RS02210 - Trk system potassium transporter TrkA, at 491,269 to 492,645
_RS02210
Position (kb) 490
491 Strain fitness (log2 ratio) -2
-1
0
1
2 at 490.366 kb on - strand at 490.382 kb on + strand at 490.382 kb on + strand at 490.382 kb on + strand at 490.403 kb on + strand at 490.403 kb on + strand at 490.403 kb on + strand at 490.404 kb on - strand at 490.404 kb on - strand at 490.404 kb on - strand at 490.404 kb on - strand at 490.409 kb on + strand at 490.410 kb on - strand at 490.410 kb on - strand at 490.446 kb on + strand at 490.446 kb on + strand at 490.446 kb on + strand at 490.446 kb on + strand at 490.447 kb on - strand at 490.447 kb on - strand at 490.447 kb on - strand at 490.451 kb on - strand at 490.451 kb on - strand at 490.465 kb on + strand at 490.465 kb on + strand at 490.466 kb on - strand at 490.467 kb on + strand at 490.467 kb on + strand at 490.467 kb on + strand at 490.467 kb on + strand at 490.467 kb on + strand at 490.468 kb on - strand at 490.468 kb on - strand at 490.468 kb on - strand at 490.482 kb on - strand at 490.490 kb on - strand at 490.490 kb on - strand at 490.490 kb on - strand at 490.490 kb on - strand at 490.490 kb on - strand at 490.493 kb on + strand at 490.494 kb on - strand at 490.511 kb on - strand at 490.530 kb on + strand at 490.530 kb on + strand at 490.530 kb on + strand at 490.530 kb on + strand at 490.531 kb on - strand at 490.531 kb on - strand at 490.580 kb on - strand, within HER17_RS02200 at 490.580 kb on - strand, within HER17_RS02200 at 490.580 kb on - strand, within HER17_RS02200 at 490.580 kb on - strand, within HER17_RS02200 at 490.636 kb on - strand, within HER17_RS02200 at 490.667 kb on + strand, within HER17_RS02200 at 490.720 kb on + strand at 490.739 kb on + strand at 490.751 kb on - strand at 490.751 kb on - strand at 490.809 kb on + strand, within HER17_RS02205 at 490.809 kb on + strand, within HER17_RS02205 at 490.809 kb on + strand, within HER17_RS02205 at 490.812 kb on + strand, within HER17_RS02205 at 490.812 kb on + strand, within HER17_RS02205 at 490.813 kb on - strand, within HER17_RS02205 at 490.813 kb on - strand, within HER17_RS02205 at 490.853 kb on + strand, within HER17_RS02205 at 490.854 kb on - strand, within HER17_RS02205 at 490.877 kb on + strand, within HER17_RS02205 at 490.883 kb on + strand, within HER17_RS02205 at 490.884 kb on - strand, within HER17_RS02205 at 490.922 kb on + strand, within HER17_RS02205 at 490.923 kb on - strand, within HER17_RS02205 at 490.923 kb on - strand, within HER17_RS02205 at 490.955 kb on - strand, within HER17_RS02205 at 490.955 kb on - strand, within HER17_RS02205 at 491.054 kb on + strand, within HER17_RS02205 at 491.057 kb on + strand, within HER17_RS02205 at 491.057 kb on + strand, within HER17_RS02205 at 491.057 kb on + strand, within HER17_RS02205 at 491.058 kb on - strand, within HER17_RS02205 at 491.060 kb on + strand, within HER17_RS02205 at 491.061 kb on - strand, within HER17_RS02205 at 491.105 kb on + strand, within HER17_RS02205 at 491.166 kb on - strand at 491.240 kb on + strand at 491.253 kb on + strand at 491.253 kb on + strand at 491.253 kb on + strand at 491.253 kb on + strand at 491.253 kb on + strand at 491.254 kb on - strand at 491.254 kb on - strand at 491.270 kb on + strand at 491.270 kb on + strand at 491.419 kb on - strand, within HER17_RS02210 at 491.419 kb on - strand, within HER17_RS02210 at 491.440 kb on - strand, within HER17_RS02210 at 491.527 kb on + strand, within HER17_RS02210 at 491.543 kb on - strand, within HER17_RS02210 at 491.701 kb on - strand, within HER17_RS02210
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 490,366 - +0.2 490,382 + -1.1 490,382 + +0.9 490,382 + +1.1 490,403 + +0.5 490,403 + -1.0 490,403 + -1.7 490,404 - +0.1 490,404 - +0.2 490,404 - +0.5 490,404 - -1.2 490,409 + -1.2 490,410 - -0.4 490,410 - -0.5 490,446 + -0.8 490,446 + -1.2 490,446 + +0.3 490,446 + +0.3 490,447 - -0.9 490,447 - -0.2 490,447 - +0.5 490,451 - -0.3 490,451 - +1.2 490,465 + -0.9 490,465 + -0.5 490,466 - +0.1 490,467 + +0.2 490,467 + -1.0 490,467 + -0.9 490,467 + -1.2 490,467 + -0.3 490,468 - -0.6 490,468 - -0.7 490,468 - +0.3 490,482 - +0.1 490,490 - -1.0 490,490 - -1.4 490,490 - -0.5 490,490 - +0.2 490,490 - +0.8 490,493 + -0.3 490,494 - +0.1 490,511 - -0.2 490,530 + +0.0 490,530 + -0.3 490,530 + -0.7 490,530 + +0.4 490,531 - +0.4 490,531 - +0.8 490,580 - HER17_RS02200 0.27 -0.3 490,580 - HER17_RS02200 0.27 +0.2 490,580 - HER17_RS02200 0.27 -1.1 490,580 - HER17_RS02200 0.27 +0.1 490,636 - HER17_RS02200 0.53 -1.9 490,667 + HER17_RS02200 0.68 -1.3 490,720 + +0.9 490,739 + -0.2 490,751 - -0.8 490,751 - +1.0 490,809 + HER17_RS02205 0.11 +0.1 490,809 + HER17_RS02205 0.11 -0.3 490,809 + HER17_RS02205 0.11 -0.8 490,812 + HER17_RS02205 0.12 -0.0 490,812 + HER17_RS02205 0.12 -0.4 490,813 - HER17_RS02205 0.12 -0.6 490,813 - HER17_RS02205 0.12 -0.1 490,853 + HER17_RS02205 0.21 -0.7 490,854 - HER17_RS02205 0.22 -0.1 490,877 + HER17_RS02205 0.27 -1.2 490,883 + HER17_RS02205 0.29 +0.3 490,884 - HER17_RS02205 0.29 -0.0 490,922 + HER17_RS02205 0.38 +0.1 490,923 - HER17_RS02205 0.38 -0.1 490,923 - HER17_RS02205 0.38 -0.8 490,955 - HER17_RS02205 0.46 +0.0 490,955 - HER17_RS02205 0.46 -0.8 491,054 + HER17_RS02205 0.70 -0.1 491,057 + HER17_RS02205 0.71 -2.0 491,057 + HER17_RS02205 0.71 -1.0 491,057 + HER17_RS02205 0.71 -1.2 491,058 - HER17_RS02205 0.71 -0.9 491,060 + HER17_RS02205 0.71 -1.6 491,061 - HER17_RS02205 0.72 +0.2 491,105 + HER17_RS02205 0.82 -0.3 491,166 - -0.8 491,240 + +0.3 491,253 + +2.2 491,253 + -0.9 491,253 + -0.1 491,253 + -1.2 491,253 + -0.3 491,254 - -0.7 491,254 - +0.1 491,270 + -0.0 491,270 + +0.3 491,419 - HER17_RS02210 0.11 -0.7 491,419 - HER17_RS02210 0.11 -2.0 491,440 - HER17_RS02210 0.12 -0.4 491,527 + HER17_RS02210 0.19 -1.3 491,543 - HER17_RS02210 0.20 +0.0 491,701 - HER17_RS02210 0.31 -2.4
Or see this region's nucleotide sequence