Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01920

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01915 and HER17_RS01920 are separated by 373 nucleotidesHER17_RS01920 and HER17_RS01925 are separated by 38 nucleotides HER17_RS01915: HER17_RS01915 - cAMP-activated global transcriptional regulator CRP, at 450,090 to 450,722 _RS01915 HER17_RS01920: HER17_RS01920 - OsmC family protein, at 451,096 to 451,503 _RS01920 HER17_RS01925: HER17_RS01925 - phosphoribulokinase, at 451,542 to 452,411 _RS01925 Position (kb) 451 452Strain fitness (log2 ratio) -3 -2 -1 0 1at 450.760 kb on - strandat 450.792 kb on - strandat 450.840 kb on - strandat 450.842 kb on - strandat 450.842 kb on - strandat 450.856 kb on - strandat 450.856 kb on - strandat 450.905 kb on + strandat 450.905 kb on + strandat 450.905 kb on + strandat 450.906 kb on - strandat 450.906 kb on - strandat 450.908 kb on - strandat 450.920 kb on - strandat 450.920 kb on - strandat 450.920 kb on - strandat 450.959 kb on + strandat 450.960 kb on - strandat 450.976 kb on - strandat 451.214 kb on + strand, within HER17_RS01920at 451.341 kb on + strand, within HER17_RS01920at 451.341 kb on + strand, within HER17_RS01920at 451.429 kb on + strand, within HER17_RS01920at 451.430 kb on - strand, within HER17_RS01920at 451.430 kb on - strand, within HER17_RS01920at 451.430 kb on - strand, within HER17_RS01920at 451.488 kb on + strandat 451.501 kb on + strandat 451.593 kb on + strandat 451.593 kb on + strandat 451.593 kb on + strandat 451.593 kb on + strandat 451.594 kb on - strandat 451.594 kb on - strandat 451.652 kb on + strand, within HER17_RS01925at 451.652 kb on + strand, within HER17_RS01925at 451.653 kb on - strand, within HER17_RS01925at 451.681 kb on + strand, within HER17_RS01925at 451.681 kb on + strand, within HER17_RS01925at 451.681 kb on + strand, within HER17_RS01925at 451.687 kb on + strand, within HER17_RS01925at 451.693 kb on + strand, within HER17_RS01925at 451.694 kb on + strand, within HER17_RS01925at 451.694 kb on + strand, within HER17_RS01925at 451.695 kb on - strand, within HER17_RS01925at 451.784 kb on + strand, within HER17_RS01925at 451.833 kb on - strand, within HER17_RS01925at 451.834 kb on + strand, within HER17_RS01925at 451.834 kb on + strand, within HER17_RS01925at 451.834 kb on + strand, within HER17_RS01925at 451.834 kb on + strand, within HER17_RS01925at 451.834 kb on + strand, within HER17_RS01925at 451.835 kb on - strand, within HER17_RS01925at 451.835 kb on - strand, within HER17_RS01925at 451.835 kb on - strand, within HER17_RS01925at 451.835 kb on - strand, within HER17_RS01925at 451.835 kb on - strand, within HER17_RS01925at 451.835 kb on - strand, within HER17_RS01925at 451.835 kb on - strand, within HER17_RS01925at 451.835 kb on - strand, within HER17_RS01925at 451.835 kb on - strand, within HER17_RS01925at 451.843 kb on + strand, within HER17_RS01925at 451.843 kb on + strand, within HER17_RS01925at 451.844 kb on - strand, within HER17_RS01925at 451.844 kb on - strand, within HER17_RS01925at 452.026 kb on + strand, within HER17_RS01925at 452.026 kb on + strand, within HER17_RS01925at 452.026 kb on + strand, within HER17_RS01925at 452.026 kb on + strand, within HER17_RS01925at 452.026 kb on + strand, within HER17_RS01925at 452.027 kb on - strand, within HER17_RS01925at 452.027 kb on - strand, within HER17_RS01925at 452.027 kb on - strand, within HER17_RS01925at 452.091 kb on - strand, within HER17_RS01925at 452.091 kb on - strand, within HER17_RS01925at 452.093 kb on - strand, within HER17_RS01925at 452.110 kb on + strand, within HER17_RS01925at 452.111 kb on - strand, within HER17_RS01925at 452.111 kb on - strand, within HER17_RS01925at 452.111 kb on - strand, within HER17_RS01925at 452.111 kb on - strand, within HER17_RS01925at 452.111 kb on - strand, within HER17_RS01925at 452.114 kb on + strand, within HER17_RS01925at 452.115 kb on - strand, within HER17_RS01925at 452.123 kb on - strand, within HER17_RS01925at 452.123 kb on - strand, within HER17_RS01925at 452.126 kb on + strand, within HER17_RS01925at 452.126 kb on + strand, within HER17_RS01925at 452.126 kb on + strand, within HER17_RS01925at 452.127 kb on - strand, within HER17_RS01925at 452.155 kb on + strand, within HER17_RS01925at 452.210 kb on - strand, within HER17_RS01925at 452.210 kb on - strand, within HER17_RS01925at 452.270 kb on + strand, within HER17_RS01925at 452.271 kb on - strand, within HER17_RS01925at 452.272 kb on + strand, within HER17_RS01925at 452.272 kb on + strand, within HER17_RS01925at 452.273 kb on - strand, within HER17_RS01925at 452.411 kb on + strandat 452.411 kb on + strandat 452.412 kb on - strandat 452.481 kb on + strandat 452.481 kb on + strandat 452.485 kb on + strandat 452.485 kb on + strandat 452.485 kb on + strandat 452.485 kb on + strandat 452.485 kb on + strandat 452.485 kb on + strandat 452.485 kb on + strandat 452.485 kb on + strandat 452.486 kb on - strandat 452.486 kb on - strandat 452.486 kb on - strandat 452.486 kb on - strandat 452.486 kb on - strandat 452.486 kb on - strandat 452.486 kb on - strandat 452.486 kb on - strandat 452.489 kb on + strandat 452.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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450,760 - -0.3
450,792 - -2.1
450,840 - -1.1
450,842 - -0.6
450,842 - -0.3
450,856 - -1.2
450,856 - -1.1
450,905 + -0.4
450,905 + -2.8
450,905 + -2.3
450,906 - +1.0
450,906 - -0.6
450,908 - -0.4
450,920 - -0.6
450,920 - -0.9
450,920 - +0.6
450,959 + -0.3
450,960 - -0.9
450,976 - +0.2
451,214 + HER17_RS01920 0.29 -0.2
451,341 + HER17_RS01920 0.60 +0.1
451,341 + HER17_RS01920 0.60 -0.5
451,429 + HER17_RS01920 0.82 +0.5
451,430 - HER17_RS01920 0.82 -1.0
451,430 - HER17_RS01920 0.82 +0.5
451,430 - HER17_RS01920 0.82 +0.8
451,488 + -0.3
451,501 + -0.2
451,593 + +1.0
451,593 + -0.7
451,593 + -2.0
451,593 + -1.5
451,594 - +0.0
451,594 - +0.2
451,652 + HER17_RS01925 0.13 -0.1
451,652 + HER17_RS01925 0.13 +0.2
451,653 - HER17_RS01925 0.13 -0.6
451,681 + HER17_RS01925 0.16 +0.6
451,681 + HER17_RS01925 0.16 -0.3
451,681 + HER17_RS01925 0.16 -0.0
451,687 + HER17_RS01925 0.17 +0.9
451,693 + HER17_RS01925 0.17 +0.1
451,694 + HER17_RS01925 0.17 -0.4
451,694 + HER17_RS01925 0.17 +0.9
451,695 - HER17_RS01925 0.18 +0.2
451,784 + HER17_RS01925 0.28 -0.2
451,833 - HER17_RS01925 0.33 +0.3
451,834 + HER17_RS01925 0.34 +0.1
451,834 + HER17_RS01925 0.34 +0.8
451,834 + HER17_RS01925 0.34 -0.7
451,834 + HER17_RS01925 0.34 +0.2
451,834 + HER17_RS01925 0.34 +0.4
451,835 - HER17_RS01925 0.34 +0.1
451,835 - HER17_RS01925 0.34 +0.2
451,835 - HER17_RS01925 0.34 -1.1
451,835 - HER17_RS01925 0.34 -0.6
451,835 - HER17_RS01925 0.34 -0.3
451,835 - HER17_RS01925 0.34 -0.1
451,835 - HER17_RS01925 0.34 +0.1
451,835 - HER17_RS01925 0.34 +0.4
451,835 - HER17_RS01925 0.34 +0.1
451,843 + HER17_RS01925 0.35 +1.0
451,843 + HER17_RS01925 0.35 +0.3
451,844 - HER17_RS01925 0.35 -0.3
451,844 - HER17_RS01925 0.35 +0.3
452,026 + HER17_RS01925 0.56 +0.1
452,026 + HER17_RS01925 0.56 +0.0
452,026 + HER17_RS01925 0.56 -1.7
452,026 + HER17_RS01925 0.56 -0.3
452,026 + HER17_RS01925 0.56 -0.5
452,027 - HER17_RS01925 0.56 -0.0
452,027 - HER17_RS01925 0.56 -0.1
452,027 - HER17_RS01925 0.56 +0.1
452,091 - HER17_RS01925 0.63 +0.8
452,091 - HER17_RS01925 0.63 -0.3
452,093 - HER17_RS01925 0.63 -1.4
452,110 + HER17_RS01925 0.65 +0.5
452,111 - HER17_RS01925 0.65 -0.1
452,111 - HER17_RS01925 0.65 +0.3
452,111 - HER17_RS01925 0.65 -0.4
452,111 - HER17_RS01925 0.65 -1.6
452,111 - HER17_RS01925 0.65 -0.3
452,114 + HER17_RS01925 0.66 -2.0
452,115 - HER17_RS01925 0.66 +0.6
452,123 - HER17_RS01925 0.67 -0.3
452,123 - HER17_RS01925 0.67 -0.5
452,126 + HER17_RS01925 0.67 +0.3
452,126 + HER17_RS01925 0.67 +0.6
452,126 + HER17_RS01925 0.67 -0.1
452,127 - HER17_RS01925 0.67 +0.0
452,155 + HER17_RS01925 0.70 -1.9
452,210 - HER17_RS01925 0.77 +0.0
452,210 - HER17_RS01925 0.77 +0.3
452,270 + HER17_RS01925 0.84 +0.3
452,271 - HER17_RS01925 0.84 +0.4
452,272 + HER17_RS01925 0.84 +0.6
452,272 + HER17_RS01925 0.84 +0.2
452,273 - HER17_RS01925 0.84 -0.0
452,411 + -0.2
452,411 + +0.3
452,412 - +0.2
452,481 + +0.0
452,481 + +0.4
452,485 + -1.3
452,485 + -1.1
452,485 + +1.2
452,485 + +1.0
452,485 + -0.0
452,485 + -0.4
452,485 + -0.1
452,485 + +0.5
452,486 - -0.3
452,486 - -0.1
452,486 - -0.6
452,486 - +0.2
452,486 - +0.4
452,486 - +0.2
452,486 - +0.1
452,486 - +0.2
452,489 + +0.5
452,499 - +0.1

Or see this region's nucleotide sequence