Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01915

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS01910 and HER17_RS01915 are separated by 158 nucleotidesHER17_RS01915 and HER17_RS01920 are separated by 373 nucleotidesHER17_RS01920 and HER17_RS01925 are separated by 38 nucleotides HER17_RS01910: HER17_RS01910 - aspartate aminotransferase family protein, at 448,705 to 449,931 _RS01910 HER17_RS01915: HER17_RS01915 - cAMP-activated global transcriptional regulator CRP, at 450,090 to 450,722 _RS01915 HER17_RS01920: HER17_RS01920 - OsmC family protein, at 451,096 to 451,503 _RS01920 HER17_RS01925: HER17_RS01925 - phosphoribulokinase, at 451,542 to 452,411 _RS01925 Position (kb) 450 451Strain fitness (log2 ratio) -3 -2 -1 0 1at 449.116 kb on + strand, within HER17_RS01910at 449.116 kb on + strand, within HER17_RS01910at 449.116 kb on + strand, within HER17_RS01910at 449.169 kb on + strand, within HER17_RS01910at 449.173 kb on + strand, within HER17_RS01910at 449.173 kb on + strand, within HER17_RS01910at 449.173 kb on + strand, within HER17_RS01910at 449.174 kb on - strand, within HER17_RS01910at 449.174 kb on - strand, within HER17_RS01910at 449.174 kb on - strand, within HER17_RS01910at 449.174 kb on - strand, within HER17_RS01910at 449.174 kb on - strand, within HER17_RS01910at 449.194 kb on - strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.262 kb on + strand, within HER17_RS01910at 449.263 kb on - strand, within HER17_RS01910at 449.263 kb on - strand, within HER17_RS01910at 449.263 kb on - strand, within HER17_RS01910at 449.263 kb on - strand, within HER17_RS01910at 449.375 kb on + strand, within HER17_RS01910at 449.376 kb on - strand, within HER17_RS01910at 449.376 kb on - strand, within HER17_RS01910at 449.376 kb on - strand, within HER17_RS01910at 449.417 kb on + strand, within HER17_RS01910at 449.417 kb on + strand, within HER17_RS01910at 449.440 kb on - strand, within HER17_RS01910at 449.442 kb on + strand, within HER17_RS01910at 449.442 kb on + strand, within HER17_RS01910at 449.442 kb on + strand, within HER17_RS01910at 449.544 kb on - strand, within HER17_RS01910at 449.557 kb on + strand, within HER17_RS01910at 449.557 kb on + strand, within HER17_RS01910at 449.557 kb on + strand, within HER17_RS01910at 449.557 kb on + strand, within HER17_RS01910at 449.558 kb on - strand, within HER17_RS01910at 449.558 kb on - strand, within HER17_RS01910at 449.607 kb on + strand, within HER17_RS01910at 449.607 kb on + strand, within HER17_RS01910at 449.607 kb on + strand, within HER17_RS01910at 449.607 kb on + strand, within HER17_RS01910at 449.608 kb on - strand, within HER17_RS01910at 449.608 kb on - strand, within HER17_RS01910at 449.608 kb on - strand, within HER17_RS01910at 449.608 kb on - strand, within HER17_RS01910at 449.610 kb on + strand, within HER17_RS01910at 449.624 kb on + strand, within HER17_RS01910at 449.624 kb on + strand, within HER17_RS01910at 449.625 kb on - strand, within HER17_RS01910at 449.625 kb on - strand, within HER17_RS01910at 449.625 kb on - strand, within HER17_RS01910at 449.697 kb on - strand, within HER17_RS01910at 449.803 kb on - strand, within HER17_RS01910at 449.803 kb on - strand, within HER17_RS01910at 449.841 kb on - strandat 449.868 kb on + strandat 449.933 kb on + strandat 449.934 kb on - strandat 449.934 kb on - strandat 449.934 kb on - strandat 449.965 kb on + strandat 449.966 kb on - strandat 450.065 kb on - strandat 450.071 kb on - strandat 450.075 kb on + strandat 450.760 kb on - strandat 450.792 kb on - strandat 450.840 kb on - strandat 450.842 kb on - strandat 450.842 kb on - strandat 450.856 kb on - strandat 450.856 kb on - strandat 450.905 kb on + strandat 450.905 kb on + strandat 450.905 kb on + strandat 450.906 kb on - strandat 450.906 kb on - strandat 450.908 kb on - strandat 450.920 kb on - strandat 450.920 kb on - strandat 450.920 kb on - strandat 450.959 kb on + strandat 450.960 kb on - strandat 450.976 kb on - strandat 451.214 kb on + strand, within HER17_RS01920at 451.341 kb on + strand, within HER17_RS01920at 451.341 kb on + strand, within HER17_RS01920at 451.429 kb on + strand, within HER17_RS01920at 451.430 kb on - strand, within HER17_RS01920at 451.430 kb on - strand, within HER17_RS01920at 451.430 kb on - strand, within HER17_RS01920at 451.488 kb on + strandat 451.501 kb on + strandat 451.593 kb on + strandat 451.593 kb on + strandat 451.593 kb on + strandat 451.593 kb on + strandat 451.594 kb on - strandat 451.594 kb on - strandat 451.652 kb on + strand, within HER17_RS01925at 451.652 kb on + strand, within HER17_RS01925at 451.653 kb on - strand, within HER17_RS01925at 451.681 kb on + strand, within HER17_RS01925at 451.681 kb on + strand, within HER17_RS01925at 451.681 kb on + strand, within HER17_RS01925at 451.687 kb on + strand, within HER17_RS01925at 451.693 kb on + strand, within HER17_RS01925at 451.694 kb on + strand, within HER17_RS01925at 451.694 kb on + strand, within HER17_RS01925at 451.695 kb on - strand, within HER17_RS01925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
449,116 + HER17_RS01910 0.33 +0.4
449,116 + HER17_RS01910 0.33 +0.1
449,116 + HER17_RS01910 0.33 -0.1
449,169 + HER17_RS01910 0.38 +0.3
449,173 + HER17_RS01910 0.38 -0.5
449,173 + HER17_RS01910 0.38 -0.5
449,173 + HER17_RS01910 0.38 +0.4
449,174 - HER17_RS01910 0.38 +0.4
449,174 - HER17_RS01910 0.38 -0.5
449,174 - HER17_RS01910 0.38 -0.2
449,174 - HER17_RS01910 0.38 -0.4
449,174 - HER17_RS01910 0.38 +0.2
449,194 - HER17_RS01910 0.40 -0.6
449,262 + HER17_RS01910 0.45 -0.0
449,262 + HER17_RS01910 0.45 +0.8
449,262 + HER17_RS01910 0.45 +0.4
449,262 + HER17_RS01910 0.45 +0.4
449,262 + HER17_RS01910 0.45 -0.0
449,262 + HER17_RS01910 0.45 -0.0
449,263 - HER17_RS01910 0.45 +0.3
449,263 - HER17_RS01910 0.45 -1.3
449,263 - HER17_RS01910 0.45 -1.2
449,263 - HER17_RS01910 0.45 -0.1
449,375 + HER17_RS01910 0.55 -1.2
449,376 - HER17_RS01910 0.55 +0.0
449,376 - HER17_RS01910 0.55 -0.1
449,376 - HER17_RS01910 0.55 -0.2
449,417 + HER17_RS01910 0.58 -0.8
449,417 + HER17_RS01910 0.58 -2.4
449,440 - HER17_RS01910 0.60 -0.9
449,442 + HER17_RS01910 0.60 -0.2
449,442 + HER17_RS01910 0.60 -0.8
449,442 + HER17_RS01910 0.60 +0.5
449,544 - HER17_RS01910 0.68 +0.3
449,557 + HER17_RS01910 0.69 +0.1
449,557 + HER17_RS01910 0.69 -0.8
449,557 + HER17_RS01910 0.69 +0.7
449,557 + HER17_RS01910 0.69 -0.2
449,558 - HER17_RS01910 0.70 +0.2
449,558 - HER17_RS01910 0.70 -0.3
449,607 + HER17_RS01910 0.74 +0.4
449,607 + HER17_RS01910 0.74 +0.6
449,607 + HER17_RS01910 0.74 +0.0
449,607 + HER17_RS01910 0.74 +1.0
449,608 - HER17_RS01910 0.74 +0.0
449,608 - HER17_RS01910 0.74 -0.3
449,608 - HER17_RS01910 0.74 +0.5
449,608 - HER17_RS01910 0.74 -0.4
449,610 + HER17_RS01910 0.74 +1.2
449,624 + HER17_RS01910 0.75 -0.2
449,624 + HER17_RS01910 0.75 -0.7
449,625 - HER17_RS01910 0.75 -0.1
449,625 - HER17_RS01910 0.75 -0.4
449,625 - HER17_RS01910 0.75 -0.0
449,697 - HER17_RS01910 0.81 -0.0
449,803 - HER17_RS01910 0.89 -0.9
449,803 - HER17_RS01910 0.89 -0.2
449,841 - +1.1
449,868 + +0.1
449,933 + +0.7
449,934 - +0.3
449,934 - -0.1
449,934 - +0.7
449,965 + +0.9
449,966 - -0.0
450,065 - -2.3
450,071 - +0.1
450,075 + -0.9
450,760 - -0.3
450,792 - -2.1
450,840 - -1.1
450,842 - -0.6
450,842 - -0.3
450,856 - -1.2
450,856 - -1.1
450,905 + -0.4
450,905 + -2.8
450,905 + -2.3
450,906 - +1.0
450,906 - -0.6
450,908 - -0.4
450,920 - -0.6
450,920 - -0.9
450,920 - +0.6
450,959 + -0.3
450,960 - -0.9
450,976 - +0.2
451,214 + HER17_RS01920 0.29 -0.2
451,341 + HER17_RS01920 0.60 +0.1
451,341 + HER17_RS01920 0.60 -0.5
451,429 + HER17_RS01920 0.82 +0.5
451,430 - HER17_RS01920 0.82 -1.0
451,430 - HER17_RS01920 0.82 +0.5
451,430 - HER17_RS01920 0.82 +0.8
451,488 + -0.3
451,501 + -0.2
451,593 + +1.0
451,593 + -0.7
451,593 + -2.0
451,593 + -1.5
451,594 - +0.0
451,594 - +0.2
451,652 + HER17_RS01925 0.13 -0.1
451,652 + HER17_RS01925 0.13 +0.2
451,653 - HER17_RS01925 0.13 -0.6
451,681 + HER17_RS01925 0.16 +0.6
451,681 + HER17_RS01925 0.16 -0.3
451,681 + HER17_RS01925 0.16 -0.0
451,687 + HER17_RS01925 0.17 +0.9
451,693 + HER17_RS01925 0.17 +0.1
451,694 + HER17_RS01925 0.17 -0.4
451,694 + HER17_RS01925 0.17 +0.9
451,695 - HER17_RS01925 0.18 +0.2

Or see this region's nucleotide sequence