Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00895

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00890 and HER17_RS00895 overlap by 4 nucleotidesHER17_RS00895 and HER17_RS00900 are separated by 9 nucleotides HER17_RS00890: HER17_RS00890 - iron ABC transporter permease, at 205,355 to 206,365 _RS00890 HER17_RS00895: HER17_RS00895 - ABC transporter substrate-binding protein, at 206,362 to 207,324 _RS00895 HER17_RS00900: HER17_RS00900 - ABC transporter ATP-binding protein, at 207,334 to 208,131 _RS00900 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 205.373 kb on + strandat 205.414 kb on + strandat 205.417 kb on + strandat 205.418 kb on - strandat 205.418 kb on - strandat 205.522 kb on + strand, within HER17_RS00890at 205.522 kb on + strand, within HER17_RS00890at 205.529 kb on + strand, within HER17_RS00890at 205.529 kb on + strand, within HER17_RS00890at 205.530 kb on - strand, within HER17_RS00890at 205.630 kb on + strand, within HER17_RS00890at 205.660 kb on + strand, within HER17_RS00890at 205.770 kb on - strand, within HER17_RS00890at 205.774 kb on + strand, within HER17_RS00890at 205.774 kb on + strand, within HER17_RS00890at 205.775 kb on - strand, within HER17_RS00890at 205.858 kb on - strand, within HER17_RS00890at 205.858 kb on - strand, within HER17_RS00890at 205.858 kb on - strand, within HER17_RS00890at 205.858 kb on - strand, within HER17_RS00890at 206.069 kb on + strand, within HER17_RS00890at 206.070 kb on - strand, within HER17_RS00890at 206.138 kb on + strand, within HER17_RS00890at 206.231 kb on + strand, within HER17_RS00890at 206.240 kb on + strand, within HER17_RS00890at 206.257 kb on + strand, within HER17_RS00890at 206.288 kb on - strandat 206.291 kb on + strandat 206.292 kb on - strandat 206.292 kb on - strandat 206.367 kb on + strandat 206.367 kb on + strandat 206.367 kb on + strandat 206.381 kb on + strandat 206.401 kb on - strandat 206.401 kb on - strandat 206.433 kb on + strandat 206.434 kb on - strandat 206.434 kb on - strandat 206.434 kb on - strandat 206.444 kb on + strandat 206.445 kb on - strandat 206.455 kb on + strandat 206.455 kb on + strandat 206.455 kb on + strandat 206.455 kb on + strandat 206.455 kb on + strandat 206.455 kb on + strandat 206.456 kb on - strandat 206.456 kb on - strandat 206.456 kb on - strandat 206.456 kb on - strandat 206.456 kb on - strandat 206.565 kb on + strand, within HER17_RS00895at 206.565 kb on + strand, within HER17_RS00895at 206.635 kb on + strand, within HER17_RS00895at 206.635 kb on + strand, within HER17_RS00895at 206.636 kb on - strand, within HER17_RS00895at 206.694 kb on + strand, within HER17_RS00895at 206.704 kb on - strand, within HER17_RS00895at 206.856 kb on - strand, within HER17_RS00895at 206.924 kb on - strand, within HER17_RS00895at 206.990 kb on + strand, within HER17_RS00895at 206.990 kb on + strand, within HER17_RS00895at 206.990 kb on + strand, within HER17_RS00895at 206.990 kb on + strand, within HER17_RS00895at 207.023 kb on - strand, within HER17_RS00895at 207.050 kb on + strand, within HER17_RS00895at 207.108 kb on + strand, within HER17_RS00895at 207.108 kb on + strand, within HER17_RS00895at 207.109 kb on - strand, within HER17_RS00895at 207.109 kb on - strand, within HER17_RS00895at 207.109 kb on - strand, within HER17_RS00895at 207.110 kb on + strand, within HER17_RS00895at 207.111 kb on - strand, within HER17_RS00895at 207.111 kb on - strand, within HER17_RS00895at 207.142 kb on - strand, within HER17_RS00895at 207.142 kb on - strand, within HER17_RS00895at 207.335 kb on + strandat 207.396 kb on + strandat 207.396 kb on + strandat 207.397 kb on - strandat 207.397 kb on - strandat 207.469 kb on + strand, within HER17_RS00900at 207.724 kb on + strand, within HER17_RS00900at 207.724 kb on + strand, within HER17_RS00900at 207.725 kb on - strand, within HER17_RS00900at 207.725 kb on - strand, within HER17_RS00900at 207.725 kb on - strand, within HER17_RS00900at 207.725 kb on - strand, within HER17_RS00900at 207.806 kb on - strand, within HER17_RS00900at 207.806 kb on - strand, within HER17_RS00900at 207.815 kb on + strand, within HER17_RS00900at 207.816 kb on - strand, within HER17_RS00900at 207.929 kb on + strand, within HER17_RS00900at 207.930 kb on - strand, within HER17_RS00900at 207.968 kb on - strand, within HER17_RS00900at 208.042 kb on - strand, within HER17_RS00900at 208.042 kb on - strand, within HER17_RS00900at 208.096 kb on + strandat 208.097 kb on - strandat 208.111 kb on - strandat 208.142 kb on + strandat 208.142 kb on + strandat 208.143 kb on - strandat 208.153 kb on + strandat 208.153 kb on + strandat 208.154 kb on - strandat 208.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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205,373 + +0.4
205,414 + +0.1
205,417 + -1.8
205,418 - +0.3
205,418 - -0.3
205,522 + HER17_RS00890 0.17 +0.2
205,522 + HER17_RS00890 0.17 -0.1
205,529 + HER17_RS00890 0.17 -0.9
205,529 + HER17_RS00890 0.17 -0.1
205,530 - HER17_RS00890 0.17 -0.6
205,630 + HER17_RS00890 0.27 -0.9
205,660 + HER17_RS00890 0.30 -0.4
205,770 - HER17_RS00890 0.41 +0.1
205,774 + HER17_RS00890 0.41 -0.1
205,774 + HER17_RS00890 0.41 -0.1
205,775 - HER17_RS00890 0.42 +0.5
205,858 - HER17_RS00890 0.50 +0.3
205,858 - HER17_RS00890 0.50 +0.8
205,858 - HER17_RS00890 0.50 +0.5
205,858 - HER17_RS00890 0.50 +0.8
206,069 + HER17_RS00890 0.71 +0.6
206,070 - HER17_RS00890 0.71 +0.5
206,138 + HER17_RS00890 0.77 -0.1
206,231 + HER17_RS00890 0.87 +1.5
206,240 + HER17_RS00890 0.88 +0.3
206,257 + HER17_RS00890 0.89 -0.2
206,288 - +0.2
206,291 + -0.1
206,292 - +0.2
206,292 - -0.6
206,367 + +0.6
206,367 + +0.3
206,367 + +0.4
206,381 + +0.2
206,401 - -0.2
206,401 - -0.3
206,433 + +0.2
206,434 - +0.2
206,434 - -0.5
206,434 - -0.9
206,444 + +1.8
206,445 - +0.3
206,455 + +0.0
206,455 + +1.2
206,455 + +0.1
206,455 + +0.2
206,455 + +0.3
206,455 + +0.7
206,456 - -0.2
206,456 - -0.1
206,456 - -0.9
206,456 - -0.3
206,456 - -0.1
206,565 + HER17_RS00895 0.21 +0.1
206,565 + HER17_RS00895 0.21 +0.4
206,635 + HER17_RS00895 0.28 -0.2
206,635 + HER17_RS00895 0.28 +0.2
206,636 - HER17_RS00895 0.28 +0.8
206,694 + HER17_RS00895 0.34 -0.0
206,704 - HER17_RS00895 0.36 -0.4
206,856 - HER17_RS00895 0.51 -0.0
206,924 - HER17_RS00895 0.58 +0.7
206,990 + HER17_RS00895 0.65 +0.4
206,990 + HER17_RS00895 0.65 -0.4
206,990 + HER17_RS00895 0.65 +0.9
206,990 + HER17_RS00895 0.65 -1.2
207,023 - HER17_RS00895 0.69 -0.0
207,050 + HER17_RS00895 0.71 -1.3
207,108 + HER17_RS00895 0.77 +1.5
207,108 + HER17_RS00895 0.77 -0.4
207,109 - HER17_RS00895 0.78 +0.8
207,109 - HER17_RS00895 0.78 +0.1
207,109 - HER17_RS00895 0.78 -0.4
207,110 + HER17_RS00895 0.78 +0.4
207,111 - HER17_RS00895 0.78 -0.0
207,111 - HER17_RS00895 0.78 -0.1
207,142 - HER17_RS00895 0.81 +0.1
207,142 - HER17_RS00895 0.81 -0.4
207,335 + -0.1
207,396 + -0.9
207,396 + +0.2
207,397 - +0.6
207,397 - +0.0
207,469 + HER17_RS00900 0.17 +0.5
207,724 + HER17_RS00900 0.49 +0.3
207,724 + HER17_RS00900 0.49 +0.3
207,725 - HER17_RS00900 0.49 -0.2
207,725 - HER17_RS00900 0.49 -0.6
207,725 - HER17_RS00900 0.49 -0.0
207,725 - HER17_RS00900 0.49 +1.3
207,806 - HER17_RS00900 0.59 +0.5
207,806 - HER17_RS00900 0.59 +1.6
207,815 + HER17_RS00900 0.60 -0.6
207,816 - HER17_RS00900 0.60 +0.5
207,929 + HER17_RS00900 0.75 +0.5
207,930 - HER17_RS00900 0.75 +0.1
207,968 - HER17_RS00900 0.79 +0.1
208,042 - HER17_RS00900 0.89 -0.3
208,042 - HER17_RS00900 0.89 -0.3
208,096 + +1.3
208,097 - -0.8
208,111 - -0.3
208,142 + +0.2
208,142 + -0.6
208,143 - +0.1
208,153 + +0.2
208,153 + +1.5
208,154 - +0.2
208,291 + +0.2

Or see this region's nucleotide sequence