Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00830 and HER17_RS00835 are separated by 570 nucleotides HER17_RS00835 and HER17_RS00840 are separated by 119 nucleotides HER17_RS00840 and HER17_RS00845 are separated by 134 nucleotides
HER17_RS00830: HER17_RS00830 - aquaporin family protein, at 194,132 to 194,971
_RS00830
HER17_RS00835: HER17_RS00835 - septal ring assembly protein ZapB, at 195,542 to 195,781
_RS00835
HER17_RS00840: HER17_RS00840 - ribonuclease E activity regulator RraA, at 195,901 to 196,386
_RS00840
HER17_RS00845: HER17_RS00845 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 196,521 to 197,438
_RS00845
Position (kb) 195
196 Strain fitness (log2 ratio) -2
-1
0
1 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.653 kb on - strand, within HER17_RS00830 at 194.700 kb on + strand, within HER17_RS00830 at 194.700 kb on + strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.797 kb on - strand, within HER17_RS00830 at 194.797 kb on - strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.945 kb on + strand at 194.946 kb on - strand at 194.972 kb on - strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.995 kb on - strand at 194.995 kb on - strand at 194.995 kb on - strand at 194.995 kb on - strand at 195.004 kb on + strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.041 kb on - strand at 195.050 kb on + strand at 195.050 kb on + strand at 195.177 kb on + strand at 195.177 kb on + strand at 195.178 kb on - strand at 195.180 kb on + strand at 195.181 kb on - strand at 195.210 kb on - strand at 195.210 kb on - strand at 195.216 kb on - strand at 195.292 kb on + strand at 195.292 kb on + strand at 195.293 kb on - strand at 195.319 kb on + strand at 195.320 kb on - strand at 195.325 kb on + strand at 195.325 kb on + strand at 195.325 kb on + strand at 195.325 kb on + strand at 195.326 kb on - strand at 195.330 kb on - strand at 195.370 kb on - strand at 195.370 kb on - strand at 195.370 kb on - strand at 195.392 kb on + strand at 195.392 kb on + strand at 195.392 kb on + strand at 195.392 kb on + strand at 195.393 kb on - strand at 195.393 kb on - strand at 195.393 kb on - strand at 195.393 kb on - strand at 195.403 kb on + strand at 195.439 kb on + strand at 195.440 kb on - strand at 195.596 kb on - strand, within HER17_RS00835 at 195.779 kb on + strand at 195.830 kb on + strand at 195.831 kb on - strand at 195.831 kb on - strand at 195.877 kb on - strand at 195.899 kb on + strand at 195.900 kb on - strand at 195.900 kb on - strand at 195.900 kb on - strand at 195.902 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.934 kb on - strand at 195.943 kb on - strand at 195.953 kb on + strand, within HER17_RS00840 at 195.953 kb on + strand, within HER17_RS00840 at 195.953 kb on + strand, within HER17_RS00840 at 196.300 kb on - strand, within HER17_RS00840 at 196.314 kb on + strand, within HER17_RS00840 at 196.315 kb on - strand, within HER17_RS00840 at 196.356 kb on + strand at 196.357 kb on - strand at 196.374 kb on + strand at 196.380 kb on - strand at 196.380 kb on - strand at 196.386 kb on + strand at 196.392 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.423 kb on + strand at 196.423 kb on + strand at 196.424 kb on - strand at 196.424 kb on - strand at 196.480 kb on + strand at 196.481 kb on - strand at 196.481 kb on - strand at 196.522 kb on + strand at 196.530 kb on + strand at 196.531 kb on - strand at 196.630 kb on + strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.696 kb on + strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.753 kb on + strand, within HER17_RS00845
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 194,605 + HER17_RS00830 0.56 -0.7 194,605 + HER17_RS00830 0.56 +0.0 194,605 + HER17_RS00830 0.56 -0.3 194,605 + HER17_RS00830 0.56 +0.1 194,606 - HER17_RS00830 0.56 +1.1 194,606 - HER17_RS00830 0.56 -0.4 194,606 - HER17_RS00830 0.56 +0.0 194,653 - HER17_RS00830 0.62 -0.4 194,700 + HER17_RS00830 0.68 -0.3 194,700 + HER17_RS00830 0.68 -0.6 194,701 - HER17_RS00830 0.68 -0.9 194,701 - HER17_RS00830 0.68 +0.1 194,701 - HER17_RS00830 0.68 +0.9 194,749 + HER17_RS00830 0.73 +0.8 194,749 + HER17_RS00830 0.73 -1.2 194,749 + HER17_RS00830 0.73 +0.1 194,797 - HER17_RS00830 0.79 +0.5 194,797 - HER17_RS00830 0.79 -1.2 194,834 + HER17_RS00830 0.84 +0.1 194,834 + HER17_RS00830 0.84 -0.8 194,834 + HER17_RS00830 0.84 +0.4 194,834 + HER17_RS00830 0.84 -0.4 194,834 + HER17_RS00830 0.84 +0.2 194,834 + HER17_RS00830 0.84 +0.3 194,835 - HER17_RS00830 0.84 +1.4 194,835 - HER17_RS00830 0.84 -0.7 194,835 - HER17_RS00830 0.84 -1.0 194,945 + +1.7 194,946 - -0.1 194,972 - +1.1 194,994 + +0.5 194,994 + +0.3 194,994 + +0.2 194,994 + -0.4 194,994 + +0.7 194,995 - -0.0 194,995 - -0.1 194,995 - -2.2 194,995 - +0.7 195,004 + +1.1 195,005 - +1.3 195,005 - +0.4 195,005 - -0.2 195,005 - +0.7 195,010 + -0.5 195,010 + +0.6 195,010 + +0.9 195,010 + +1.0 195,041 - +0.2 195,050 + -0.1 195,050 + -0.0 195,177 + +0.1 195,177 + -0.0 195,178 - -0.1 195,180 + -0.4 195,181 - -0.0 195,210 - -0.2 195,210 - -0.1 195,216 - -0.3 195,292 + -0.6 195,292 + -1.6 195,293 - +0.2 195,319 + -0.2 195,320 - -0.4 195,325 + -0.3 195,325 + +0.7 195,325 + +0.2 195,325 + -1.1 195,326 - -0.6 195,330 - -0.3 195,370 - -0.1 195,370 - -0.1 195,370 - -0.4 195,392 + -0.2 195,392 + +0.4 195,392 + -0.3 195,392 + +0.1 195,393 - -0.9 195,393 - +0.3 195,393 - -0.5 195,393 - +0.1 195,403 + -0.2 195,439 + +1.6 195,440 - +0.2 195,596 - HER17_RS00835 0.23 +0.1 195,779 + -0.5 195,830 + -0.3 195,831 - -0.2 195,831 - -0.4 195,877 - +0.6 195,899 + +0.8 195,900 - -0.3 195,900 - +0.3 195,900 - +0.1 195,902 + +0.6 195,933 + -2.2 195,933 + +1.3 195,933 + -0.0 195,933 + -0.8 195,934 - -0.2 195,943 - -1.0 195,953 + HER17_RS00840 0.11 -0.0 195,953 + HER17_RS00840 0.11 +0.3 195,953 + HER17_RS00840 0.11 -1.2 196,300 - HER17_RS00840 0.82 -1.2 196,314 + HER17_RS00840 0.85 +0.5 196,315 - HER17_RS00840 0.85 -1.7 196,356 + -0.0 196,357 - -0.0 196,374 + +0.9 196,380 - -1.0 196,380 - -0.3 196,386 + +0.3 196,392 + +0.2 196,421 + -0.0 196,421 + +0.3 196,421 + -0.1 196,421 + +0.8 196,421 + +0.1 196,422 - +0.1 196,422 - +0.6 196,422 - -0.1 196,422 - -0.4 196,422 - +1.1 196,422 - -0.8 196,422 - -0.1 196,423 + -1.1 196,423 + -0.3 196,424 - +1.1 196,424 - +0.6 196,480 + -0.1 196,481 - -0.0 196,481 - -0.1 196,522 + -0.1 196,530 + -0.1 196,531 - -0.2 196,630 + HER17_RS00845 0.12 -0.3 196,631 - HER17_RS00845 0.12 +0.4 196,631 - HER17_RS00845 0.12 -0.0 196,631 - HER17_RS00845 0.12 -0.0 196,696 + HER17_RS00845 0.19 +0.6 196,697 - HER17_RS00845 0.19 +0.7 196,697 - HER17_RS00845 0.19 -0.1 196,697 - HER17_RS00845 0.19 +0.0 196,697 - HER17_RS00845 0.19 -0.4 196,753 + HER17_RS00845 0.25 -0.0
Or see this region's nucleotide sequence