Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00250

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00240 and HER17_RS00245 are separated by 87 nucleotidesHER17_RS00245 and HER17_RS00250 are separated by 227 nucleotidesHER17_RS00250 and HER17_RS00255 are separated by 192 nucleotidesHER17_RS00255 and HER17_RS21885 are separated by 70 nucleotidesHER17_RS21885 and HER17_RS00265 are separated by 158 nucleotides HER17_RS00240: HER17_RS00240 - ABC transporter ATP-binding protein, at 53,973 to 54,983 _RS00240 HER17_RS00245: HER17_RS00245 - hypothetical protein, at 55,071 to 55,550 _RS00245 HER17_RS00250: HER17_RS00250 - hypothetical protein, at 55,778 to 56,116 _RS00250 HER17_RS00255: HER17_RS00255 - type I toxin-antitoxin system SymE family toxin, at 56,309 to 56,398 _RS00255 HER17_RS21885: HER17_RS21885 - hypothetical protein, at 56,469 to 56,627 _RS21885 HER17_RS00265: HER17_RS00265 - hypothetical protein, at 56,786 to 57,154 _RS00265 Position (kb) 55 56 57Strain fitness (log2 ratio) -1 0 1at 54.824 kb on + strand, within HER17_RS00240at 54.911 kb on + strandat 54.919 kb on - strandat 54.919 kb on - strandat 54.968 kb on + strandat 54.969 kb on - strandat 54.981 kb on + strandat 54.981 kb on + strandat 55.002 kb on - strandat 55.002 kb on - strandat 55.063 kb on + strandat 55.086 kb on - strandat 55.174 kb on - strand, within HER17_RS00245at 55.199 kb on + strand, within HER17_RS00245at 55.229 kb on + strand, within HER17_RS00245at 55.461 kb on + strand, within HER17_RS00245at 55.584 kb on - strandat 55.622 kb on + strandat 55.627 kb on + strandat 55.627 kb on + strandat 55.627 kb on + strandat 55.628 kb on - strandat 55.631 kb on + strandat 55.631 kb on + strandat 55.631 kb on + strandat 55.631 kb on + strandat 55.632 kb on - strandat 55.632 kb on - strandat 55.632 kb on - strandat 55.632 kb on - strandat 55.646 kb on - strandat 55.664 kb on - strandat 55.857 kb on + strand, within HER17_RS00250at 55.914 kb on + strand, within HER17_RS00250at 55.914 kb on + strand, within HER17_RS00250at 55.915 kb on - strand, within HER17_RS00250at 55.915 kb on - strand, within HER17_RS00250at 56.044 kb on - strand, within HER17_RS00250at 56.107 kb on - strandat 56.107 kb on - strandat 56.122 kb on + strandat 56.122 kb on + strandat 56.122 kb on + strandat 56.143 kb on + strandat 56.144 kb on - strandat 56.169 kb on - strandat 56.169 kb on - strandat 56.181 kb on - strandat 56.202 kb on - strandat 56.202 kb on - strandat 56.220 kb on + strandat 56.220 kb on + strandat 56.220 kb on + strandat 56.220 kb on + strandat 56.221 kb on - strandat 56.221 kb on - strandat 56.221 kb on - strandat 56.290 kb on + strandat 56.291 kb on - strandat 56.296 kb on + strandat 56.467 kb on + strandat 56.491 kb on + strand, within HER17_RS21885at 56.491 kb on + strand, within HER17_RS21885at 56.517 kb on + strand, within HER17_RS21885at 56.558 kb on + strand, within HER17_RS21885at 56.561 kb on - strand, within HER17_RS21885at 56.627 kb on + strandat 56.677 kb on + strandat 56.724 kb on - strandat 56.726 kb on - strandat 56.728 kb on - strandat 56.732 kb on + strandat 56.735 kb on + strandat 56.759 kb on - strandat 56.857 kb on + strand, within HER17_RS00265at 56.960 kb on + strand, within HER17_RS00265at 57.019 kb on + strand, within HER17_RS00265at 57.019 kb on + strand, within HER17_RS00265at 57.019 kb on + strand, within HER17_RS00265at 57.019 kb on + strand, within HER17_RS00265at 57.019 kb on + strand, within HER17_RS00265at 57.019 kb on + strand, within HER17_RS00265at 57.020 kb on - strand, within HER17_RS00265at 57.020 kb on - strand, within HER17_RS00265at 57.050 kb on + strand, within HER17_RS00265at 57.056 kb on - strand, within HER17_RS00265at 57.073 kb on + strand, within HER17_RS00265at 57.073 kb on + strand, within HER17_RS00265at 57.074 kb on - strand, within HER17_RS00265at 57.080 kb on + strand, within HER17_RS00265at 57.080 kb on + strand, within HER17_RS00265at 57.080 kb on + strand, within HER17_RS00265at 57.081 kb on - strand, within HER17_RS00265at 57.081 kb on - strand, within HER17_RS00265at 57.099 kb on - strand, within HER17_RS00265

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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54,824 + HER17_RS00240 0.84 -0.3
54,911 + +0.1
54,919 - +0.5
54,919 - +0.3
54,968 + +0.5
54,969 - -0.1
54,981 + +0.6
54,981 + +0.8
55,002 - +0.8
55,002 - +0.1
55,063 + -0.9
55,086 - -0.1
55,174 - HER17_RS00245 0.21 -0.6
55,199 + HER17_RS00245 0.27 +0.1
55,229 + HER17_RS00245 0.33 -0.7
55,461 + HER17_RS00245 0.81 +0.5
55,584 - -0.2
55,622 + +1.0
55,627 + -0.3
55,627 + +0.0
55,627 + -0.8
55,628 - +0.3
55,631 + -0.6
55,631 + -0.7
55,631 + +0.1
55,631 + -0.3
55,632 - -1.3
55,632 - -1.0
55,632 - +0.1
55,632 - -0.6
55,646 - +0.6
55,664 - +0.1
55,857 + HER17_RS00250 0.23 +0.5
55,914 + HER17_RS00250 0.40 -1.5
55,914 + HER17_RS00250 0.40 -0.1
55,915 - HER17_RS00250 0.40 +0.7
55,915 - HER17_RS00250 0.40 -0.6
56,044 - HER17_RS00250 0.78 -0.4
56,107 - +0.5
56,107 - +0.9
56,122 + +0.2
56,122 + +1.5
56,122 + +0.6
56,143 + -0.2
56,144 - -0.0
56,169 - +0.6
56,169 - -0.5
56,181 - +0.5
56,202 - -0.8
56,202 - -0.5
56,220 + -0.0
56,220 + +0.4
56,220 + +0.7
56,220 + +1.0
56,221 - +0.8
56,221 - -0.4
56,221 - -0.5
56,290 + -0.4
56,291 - -0.5
56,296 + -0.0
56,467 + -0.2
56,491 + HER17_RS21885 0.14 +0.5
56,491 + HER17_RS21885 0.14 -0.7
56,517 + HER17_RS21885 0.30 +0.6
56,558 + HER17_RS21885 0.56 -0.2
56,561 - HER17_RS21885 0.58 -0.3
56,627 + -1.0
56,677 + -0.2
56,724 - -0.0
56,726 - -0.2
56,728 - +0.4
56,732 + -1.2
56,735 + -0.5
56,759 - +0.7
56,857 + HER17_RS00265 0.19 -1.0
56,960 + HER17_RS00265 0.47 +0.2
57,019 + HER17_RS00265 0.63 -0.9
57,019 + HER17_RS00265 0.63 +0.5
57,019 + HER17_RS00265 0.63 +0.1
57,019 + HER17_RS00265 0.63 +0.3
57,019 + HER17_RS00265 0.63 +0.3
57,019 + HER17_RS00265 0.63 -0.4
57,020 - HER17_RS00265 0.63 -0.2
57,020 - HER17_RS00265 0.63 -0.2
57,050 + HER17_RS00265 0.72 -0.4
57,056 - HER17_RS00265 0.73 -0.4
57,073 + HER17_RS00265 0.78 -0.8
57,073 + HER17_RS00265 0.78 -0.5
57,074 - HER17_RS00265 0.78 +0.1
57,080 + HER17_RS00265 0.80 +0.4
57,080 + HER17_RS00265 0.80 -0.9
57,080 + HER17_RS00265 0.80 -0.6
57,081 - HER17_RS00265 0.80 +0.6
57,081 - HER17_RS00265 0.80 +1.2
57,099 - HER17_RS00265 0.85 +0.3

Or see this region's nucleotide sequence