Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00120

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00110 and HER17_RS00115 overlap by 4 nucleotidesHER17_RS00115 and HER17_RS00120 are separated by 39 nucleotidesHER17_RS00120 and HER17_RS00125 are separated by 75 nucleotidesHER17_RS00125 and HER17_RS00130 are separated by 172 nucleotides HER17_RS00110: HER17_RS00110 - ABC transporter permease, at 23,295 to 24,272 _RS00110 HER17_RS00115: HER17_RS00115 - ABC transporter permease, at 24,269 to 25,177 _RS00115 HER17_RS00120: HER17_RS00120 - ABC transporter ATP-binding protein, at 25,217 to 27,022 _RS00120 HER17_RS00125: HER17_RS00125 - DUF1471 domain-containing protein, at 27,098 to 27,355 _RS00125 HER17_RS00130: HER17_RS00130 - aliphatic sulfonates ABC transporter ATP-binding protein, at 27,528 to 28,328 _RS00130 Position (kb) 25 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1at 24.225 kb on + strandat 24.225 kb on + strandat 24.225 kb on + strandat 24.225 kb on + strandat 24.225 kb on + strandat 24.226 kb on - strandat 24.226 kb on - strandat 24.226 kb on - strandat 24.280 kb on + strandat 24.281 kb on - strandat 24.281 kb on - strandat 24.285 kb on + strandat 24.286 kb on - strandat 24.513 kb on - strand, within HER17_RS00115at 24.563 kb on + strand, within HER17_RS00115at 24.644 kb on - strand, within HER17_RS00115at 24.650 kb on + strand, within HER17_RS00115at 24.651 kb on - strand, within HER17_RS00115at 24.703 kb on + strand, within HER17_RS00115at 24.703 kb on + strand, within HER17_RS00115at 24.703 kb on + strand, within HER17_RS00115at 24.703 kb on + strand, within HER17_RS00115at 24.703 kb on + strand, within HER17_RS00115at 24.704 kb on - strand, within HER17_RS00115at 24.800 kb on + strand, within HER17_RS00115at 24.800 kb on + strand, within HER17_RS00115at 24.801 kb on - strand, within HER17_RS00115at 24.803 kb on + strand, within HER17_RS00115at 24.803 kb on + strand, within HER17_RS00115at 24.803 kb on + strand, within HER17_RS00115at 24.851 kb on + strand, within HER17_RS00115at 24.852 kb on - strand, within HER17_RS00115at 24.907 kb on + strand, within HER17_RS00115at 24.907 kb on + strand, within HER17_RS00115at 24.913 kb on - strand, within HER17_RS00115at 24.963 kb on - strand, within HER17_RS00115at 25.059 kb on - strand, within HER17_RS00115at 25.076 kb on + strand, within HER17_RS00115at 25.175 kb on + strandat 25.200 kb on + strandat 25.201 kb on - strandat 25.231 kb on + strandat 25.231 kb on + strandat 25.232 kb on - strandat 25.232 kb on - strandat 25.232 kb on - strandat 25.232 kb on - strandat 25.232 kb on - strandat 25.462 kb on + strand, within HER17_RS00120at 25.558 kb on + strand, within HER17_RS00120at 25.810 kb on - strand, within HER17_RS00120at 25.810 kb on - strand, within HER17_RS00120at 25.904 kb on + strand, within HER17_RS00120at 25.905 kb on - strand, within HER17_RS00120at 25.905 kb on - strand, within HER17_RS00120at 25.905 kb on - strand, within HER17_RS00120at 25.905 kb on - strand, within HER17_RS00120at 25.905 kb on - strand, within HER17_RS00120at 25.905 kb on - strand, within HER17_RS00120at 25.905 kb on - strand, within HER17_RS00120at 25.905 kb on - strand, within HER17_RS00120at 25.905 kb on - strand, within HER17_RS00120at 25.967 kb on + strand, within HER17_RS00120at 25.967 kb on + strand, within HER17_RS00120at 25.968 kb on - strand, within HER17_RS00120at 25.996 kb on + strand, within HER17_RS00120at 25.997 kb on - strand, within HER17_RS00120at 26.093 kb on - strand, within HER17_RS00120at 26.409 kb on - strand, within HER17_RS00120at 26.409 kb on - strand, within HER17_RS00120at 26.446 kb on + strand, within HER17_RS00120at 26.494 kb on + strand, within HER17_RS00120at 26.597 kb on - strand, within HER17_RS00120at 26.632 kb on + strand, within HER17_RS00120at 26.632 kb on + strand, within HER17_RS00120at 26.734 kb on + strand, within HER17_RS00120at 26.734 kb on + strand, within HER17_RS00120at 26.765 kb on - strand, within HER17_RS00120at 26.789 kb on + strand, within HER17_RS00120at 26.789 kb on + strand, within HER17_RS00120at 26.911 kb on + strandat 26.911 kb on + strandat 26.912 kb on - strandat 26.914 kb on + strandat 26.978 kb on + strandat 26.979 kb on - strandat 26.980 kb on + strandat 26.980 kb on + strandat 26.981 kb on - strandat 27.099 kb on + strandat 27.099 kb on + strandat 27.100 kb on - strandat 27.110 kb on - strandat 27.110 kb on - strandat 27.239 kb on + strand, within HER17_RS00125at 27.239 kb on + strand, within HER17_RS00125at 27.239 kb on + strand, within HER17_RS00125at 27.239 kb on + strand, within HER17_RS00125at 27.239 kb on + strand, within HER17_RS00125at 27.240 kb on - strand, within HER17_RS00125at 27.240 kb on - strand, within HER17_RS00125at 27.240 kb on - strand, within HER17_RS00125at 27.259 kb on + strand, within HER17_RS00125at 27.259 kb on + strand, within HER17_RS00125at 27.260 kb on - strand, within HER17_RS00125at 27.260 kb on - strand, within HER17_RS00125at 27.314 kb on - strand, within HER17_RS00125at 27.362 kb on + strandat 27.362 kb on + strandat 27.363 kb on - strandat 27.500 kb on + strandat 27.500 kb on + strandat 27.501 kb on - strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.529 kb on + strandat 27.531 kb on + strandat 27.531 kb on + strandat 27.531 kb on + strandat 27.532 kb on - strandat 27.549 kb on + strandat 27.707 kb on + strand, within HER17_RS00130at 27.707 kb on + strand, within HER17_RS00130at 27.762 kb on + strand, within HER17_RS00130at 27.763 kb on - strand, within HER17_RS00130at 27.763 kb on - strand, within HER17_RS00130at 27.763 kb on - strand, within HER17_RS00130at 27.987 kb on + strand, within HER17_RS00130at 27.988 kb on - strand, within HER17_RS00130

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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24,225 + +0.5
24,225 + -0.8
24,225 + -0.6
24,225 + +0.4
24,225 + -0.1
24,226 - +0.0
24,226 - -0.1
24,226 - -1.1
24,280 + +0.9
24,281 - -0.2
24,281 - -0.3
24,285 + +0.3
24,286 - +1.2
24,513 - HER17_RS00115 0.27 -0.5
24,563 + HER17_RS00115 0.32 -0.1
24,644 - HER17_RS00115 0.41 +1.4
24,650 + HER17_RS00115 0.42 +0.0
24,651 - HER17_RS00115 0.42 -0.2
24,703 + HER17_RS00115 0.48 +0.8
24,703 + HER17_RS00115 0.48 -0.2
24,703 + HER17_RS00115 0.48 -0.2
24,703 + HER17_RS00115 0.48 +0.7
24,703 + HER17_RS00115 0.48 -0.4
24,704 - HER17_RS00115 0.48 +0.3
24,800 + HER17_RS00115 0.58 -0.6
24,800 + HER17_RS00115 0.58 -0.2
24,801 - HER17_RS00115 0.59 -1.1
24,803 + HER17_RS00115 0.59 +0.3
24,803 + HER17_RS00115 0.59 -0.1
24,803 + HER17_RS00115 0.59 -0.4
24,851 + HER17_RS00115 0.64 -0.2
24,852 - HER17_RS00115 0.64 -1.0
24,907 + HER17_RS00115 0.70 -0.0
24,907 + HER17_RS00115 0.70 -0.7
24,913 - HER17_RS00115 0.71 -0.1
24,963 - HER17_RS00115 0.76 +0.1
25,059 - HER17_RS00115 0.87 -0.2
25,076 + HER17_RS00115 0.89 -1.1
25,175 + -0.3
25,200 + +0.3
25,201 - -0.3
25,231 + +0.4
25,231 + +0.3
25,232 - -0.1
25,232 - +0.0
25,232 - -1.6
25,232 - -0.1
25,232 - +0.5
25,462 + HER17_RS00120 0.14 +0.4
25,558 + HER17_RS00120 0.19 -0.3
25,810 - HER17_RS00120 0.33 -2.8
25,810 - HER17_RS00120 0.33 -0.3
25,904 + HER17_RS00120 0.38 -0.5
25,905 - HER17_RS00120 0.38 +1.1
25,905 - HER17_RS00120 0.38 -0.3
25,905 - HER17_RS00120 0.38 +0.8
25,905 - HER17_RS00120 0.38 -0.7
25,905 - HER17_RS00120 0.38 +0.4
25,905 - HER17_RS00120 0.38 -0.3
25,905 - HER17_RS00120 0.38 +0.5
25,905 - HER17_RS00120 0.38 +0.4
25,905 - HER17_RS00120 0.38 +0.2
25,967 + HER17_RS00120 0.42 +0.1
25,967 + HER17_RS00120 0.42 +0.0
25,968 - HER17_RS00120 0.42 -0.0
25,996 + HER17_RS00120 0.43 -0.2
25,997 - HER17_RS00120 0.43 +0.8
26,093 - HER17_RS00120 0.49 +0.1
26,409 - HER17_RS00120 0.66 -0.1
26,409 - HER17_RS00120 0.66 +0.8
26,446 + HER17_RS00120 0.68 -0.6
26,494 + HER17_RS00120 0.71 +1.1
26,597 - HER17_RS00120 0.76 +0.9
26,632 + HER17_RS00120 0.78 +0.2
26,632 + HER17_RS00120 0.78 -0.5
26,734 + HER17_RS00120 0.84 -0.6
26,734 + HER17_RS00120 0.84 -0.3
26,765 - HER17_RS00120 0.86 -0.4
26,789 + HER17_RS00120 0.87 -0.4
26,789 + HER17_RS00120 0.87 -0.2
26,911 + +0.3
26,911 + -0.8
26,912 - -0.4
26,914 + +0.3
26,978 + +0.2
26,979 - +0.9
26,980 + +0.1
26,980 + +0.3
26,981 - -0.1
27,099 + -0.4
27,099 + -1.3
27,100 - -0.0
27,110 - -0.3
27,110 - -0.4
27,239 + HER17_RS00125 0.55 +0.4
27,239 + HER17_RS00125 0.55 -1.1
27,239 + HER17_RS00125 0.55 -0.2
27,239 + HER17_RS00125 0.55 +0.0
27,239 + HER17_RS00125 0.55 -0.4
27,240 - HER17_RS00125 0.55 -0.4
27,240 - HER17_RS00125 0.55 -0.7
27,240 - HER17_RS00125 0.55 -1.8
27,259 + HER17_RS00125 0.62 -0.9
27,259 + HER17_RS00125 0.62 -0.4
27,260 - HER17_RS00125 0.63 -0.5
27,260 - HER17_RS00125 0.63 -1.5
27,314 - HER17_RS00125 0.84 -0.4
27,362 + +0.9
27,362 + +0.4
27,363 - -0.9
27,500 + -1.0
27,500 + +0.1
27,501 - -0.5
27,529 + -0.4
27,529 + -0.3
27,529 + -0.3
27,531 + +0.5
27,531 + -0.2
27,531 + -1.3
27,532 - -0.5
27,549 + +0.6
27,707 + HER17_RS00130 0.22 +0.6
27,707 + HER17_RS00130 0.22 -0.1
27,762 + HER17_RS00130 0.29 -0.4
27,763 - HER17_RS00130 0.29 -0.0
27,763 - HER17_RS00130 0.29 -0.5
27,763 - HER17_RS00130 0.29 -0.7
27,987 + HER17_RS00130 0.57 +0.1
27,988 - HER17_RS00130 0.57 +0.3

Or see this region's nucleotide sequence