Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21360

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS21355 and HER17_RS21360 are separated by 435 nucleotidesHER17_RS21360 and HER17_RS21365 are separated by 131 nucleotides HER17_RS21355: HER17_RS21355 - Ail/Lom family outer membrane beta-barrel protein, at 4,785,336 to 4,785,866 _RS21355 HER17_RS21360: HER17_RS21360 - tRNA-Pro, at 4,786,302 to 4,786,378 _RS21360 HER17_RS21365: HER17_RS21365 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 4,786,510 to 4,788,189 _RS21365 Position (kb) 4786 4787Strain fitness (log2 ratio) -2 -1 0 1at 4785.363 kb on - strandat 4785.368 kb on + strandat 4785.368 kb on + strandat 4785.368 kb on + strandat 4785.368 kb on + strandat 4785.368 kb on + strandat 4785.369 kb on - strandat 4785.372 kb on + strandat 4785.373 kb on - strandat 4785.385 kb on + strandat 4785.403 kb on + strand, within HER17_RS21355at 4785.511 kb on + strand, within HER17_RS21355at 4785.511 kb on + strand, within HER17_RS21355at 4785.560 kb on + strand, within HER17_RS21355at 4785.573 kb on - strand, within HER17_RS21355at 4785.604 kb on + strand, within HER17_RS21355at 4785.605 kb on - strand, within HER17_RS21355at 4785.605 kb on - strand, within HER17_RS21355at 4785.605 kb on - strand, within HER17_RS21355at 4785.607 kb on + strand, within HER17_RS21355at 4785.608 kb on - strand, within HER17_RS21355at 4785.642 kb on - strand, within HER17_RS21355at 4785.673 kb on + strand, within HER17_RS21355at 4785.693 kb on - strand, within HER17_RS21355at 4785.693 kb on - strand, within HER17_RS21355at 4785.721 kb on + strand, within HER17_RS21355at 4785.749 kb on + strand, within HER17_RS21355at 4785.919 kb on - strandat 4785.920 kb on + strandat 4785.921 kb on - strandat 4785.922 kb on + strandat 4785.954 kb on + strandat 4786.055 kb on + strandat 4786.238 kb on - strandat 4786.247 kb on - strandat 4786.391 kb on + strandat 4786.405 kb on + strandat 4786.406 kb on - strandat 4786.406 kb on - strandat 4786.408 kb on + strandat 4786.409 kb on - strandat 4786.457 kb on - strandat 4786.509 kb on - strandat 4786.536 kb on + strandat 4786.537 kb on - strandat 4786.537 kb on - strandat 4786.551 kb on + strandat 4786.552 kb on - strandat 4786.552 kb on - strandat 4786.552 kb on - strandat 4786.571 kb on + strandat 4786.593 kb on + strandat 4786.689 kb on + strand, within HER17_RS21365at 4786.766 kb on + strand, within HER17_RS21365at 4786.766 kb on + strand, within HER17_RS21365at 4786.767 kb on - strand, within HER17_RS21365at 4786.770 kb on + strand, within HER17_RS21365at 4786.770 kb on + strand, within HER17_RS21365at 4786.770 kb on + strand, within HER17_RS21365at 4786.770 kb on + strand, within HER17_RS21365at 4786.771 kb on - strand, within HER17_RS21365at 4786.771 kb on - strand, within HER17_RS21365at 4786.802 kb on + strand, within HER17_RS21365at 4786.863 kb on + strand, within HER17_RS21365at 4786.864 kb on - strand, within HER17_RS21365at 4786.865 kb on + strand, within HER17_RS21365at 4786.865 kb on + strand, within HER17_RS21365at 4786.865 kb on + strand, within HER17_RS21365at 4786.866 kb on - strand, within HER17_RS21365at 4786.875 kb on + strand, within HER17_RS21365at 4786.878 kb on + strand, within HER17_RS21365at 4786.878 kb on + strand, within HER17_RS21365at 4786.878 kb on + strand, within HER17_RS21365at 4786.879 kb on - strand, within HER17_RS21365at 4786.944 kb on - strand, within HER17_RS21365at 4786.976 kb on + strand, within HER17_RS21365at 4786.976 kb on + strand, within HER17_RS21365at 4786.977 kb on - strand, within HER17_RS21365at 4786.999 kb on - strand, within HER17_RS21365at 4787.019 kb on + strand, within HER17_RS21365at 4787.019 kb on + strand, within HER17_RS21365at 4787.020 kb on - strand, within HER17_RS21365at 4787.071 kb on - strand, within HER17_RS21365at 4787.071 kb on - strand, within HER17_RS21365at 4787.086 kb on - strand, within HER17_RS21365at 4787.129 kb on + strand, within HER17_RS21365at 4787.130 kb on - strand, within HER17_RS21365at 4787.133 kb on + strand, within HER17_RS21365at 4787.134 kb on - strand, within HER17_RS21365at 4787.134 kb on - strand, within HER17_RS21365at 4787.149 kb on - strand, within HER17_RS21365at 4787.153 kb on + strand, within HER17_RS21365at 4787.153 kb on + strand, within HER17_RS21365at 4787.154 kb on - strand, within HER17_RS21365at 4787.176 kb on - strand, within HER17_RS21365at 4787.194 kb on - strand, within HER17_RS21365at 4787.194 kb on - strand, within HER17_RS21365at 4787.213 kb on - strand, within HER17_RS21365at 4787.213 kb on - strand, within HER17_RS21365at 4787.283 kb on + strand, within HER17_RS21365at 4787.283 kb on + strand, within HER17_RS21365at 4787.283 kb on + strand, within HER17_RS21365at 4787.283 kb on + strand, within HER17_RS21365at 4787.284 kb on - strand, within HER17_RS21365at 4787.284 kb on - strand, within HER17_RS21365at 4787.284 kb on - strand, within HER17_RS21365at 4787.284 kb on - strand, within HER17_RS21365at 4787.284 kb on - strand, within HER17_RS21365at 4787.284 kb on - strand, within HER17_RS21365at 4787.284 kb on - strand, within HER17_RS21365at 4787.310 kb on + strand, within HER17_RS21365at 4787.310 kb on + strand, within HER17_RS21365at 4787.310 kb on + strand, within HER17_RS21365at 4787.311 kb on - strand, within HER17_RS21365at 4787.311 kb on - strand, within HER17_RS21365at 4787.357 kb on - strand, within HER17_RS21365

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,785,363 - -0.3
4,785,368 + -0.1
4,785,368 + -2.3
4,785,368 + -1.2
4,785,368 + -0.3
4,785,368 + +0.6
4,785,369 - +0.5
4,785,372 + -0.7
4,785,373 - +1.3
4,785,385 + -0.1
4,785,403 + HER17_RS21355 0.13 -0.1
4,785,511 + HER17_RS21355 0.33 +0.1
4,785,511 + HER17_RS21355 0.33 -0.2
4,785,560 + HER17_RS21355 0.42 +0.1
4,785,573 - HER17_RS21355 0.45 -0.4
4,785,604 + HER17_RS21355 0.50 -0.9
4,785,605 - HER17_RS21355 0.51 -0.1
4,785,605 - HER17_RS21355 0.51 -1.1
4,785,605 - HER17_RS21355 0.51 -0.9
4,785,607 + HER17_RS21355 0.51 +1.1
4,785,608 - HER17_RS21355 0.51 -1.1
4,785,642 - HER17_RS21355 0.58 -0.6
4,785,673 + HER17_RS21355 0.63 -0.5
4,785,693 - HER17_RS21355 0.67 -0.5
4,785,693 - HER17_RS21355 0.67 -0.2
4,785,721 + HER17_RS21355 0.73 +0.1
4,785,749 + HER17_RS21355 0.78 -0.2
4,785,919 - +0.1
4,785,920 + -0.5
4,785,921 - +0.6
4,785,922 + -1.1
4,785,954 + -0.2
4,786,055 + -0.3
4,786,238 - +0.3
4,786,247 - +0.3
4,786,391 + +0.6
4,786,405 + +0.6
4,786,406 - -0.2
4,786,406 - -0.1
4,786,408 + +0.0
4,786,409 - -0.6
4,786,457 - +0.2
4,786,509 - +0.4
4,786,536 + -0.3
4,786,537 - +0.5
4,786,537 - -0.8
4,786,551 + -0.1
4,786,552 - +1.3
4,786,552 - +0.3
4,786,552 - +0.4
4,786,571 + -0.3
4,786,593 + +0.9
4,786,689 + HER17_RS21365 0.11 +0.3
4,786,766 + HER17_RS21365 0.15 -0.1
4,786,766 + HER17_RS21365 0.15 -0.0
4,786,767 - HER17_RS21365 0.15 +1.1
4,786,770 + HER17_RS21365 0.15 -0.4
4,786,770 + HER17_RS21365 0.15 -0.0
4,786,770 + HER17_RS21365 0.15 -0.3
4,786,770 + HER17_RS21365 0.15 -1.2
4,786,771 - HER17_RS21365 0.16 +0.2
4,786,771 - HER17_RS21365 0.16 +0.1
4,786,802 + HER17_RS21365 0.17 +0.3
4,786,863 + HER17_RS21365 0.21 +0.9
4,786,864 - HER17_RS21365 0.21 +0.9
4,786,865 + HER17_RS21365 0.21 +0.7
4,786,865 + HER17_RS21365 0.21 +0.3
4,786,865 + HER17_RS21365 0.21 +0.8
4,786,866 - HER17_RS21365 0.21 -0.4
4,786,875 + HER17_RS21365 0.22 +0.2
4,786,878 + HER17_RS21365 0.22 -0.1
4,786,878 + HER17_RS21365 0.22 -0.3
4,786,878 + HER17_RS21365 0.22 +0.2
4,786,879 - HER17_RS21365 0.22 -0.5
4,786,944 - HER17_RS21365 0.26 +0.5
4,786,976 + HER17_RS21365 0.28 +0.2
4,786,976 + HER17_RS21365 0.28 -0.1
4,786,977 - HER17_RS21365 0.28 -0.1
4,786,999 - HER17_RS21365 0.29 -0.5
4,787,019 + HER17_RS21365 0.30 -0.4
4,787,019 + HER17_RS21365 0.30 +0.9
4,787,020 - HER17_RS21365 0.30 +0.2
4,787,071 - HER17_RS21365 0.33 +0.3
4,787,071 - HER17_RS21365 0.33 +0.0
4,787,086 - HER17_RS21365 0.34 +0.2
4,787,129 + HER17_RS21365 0.37 +1.6
4,787,130 - HER17_RS21365 0.37 -1.2
4,787,133 + HER17_RS21365 0.37 +0.1
4,787,134 - HER17_RS21365 0.37 -1.2
4,787,134 - HER17_RS21365 0.37 +0.3
4,787,149 - HER17_RS21365 0.38 +0.4
4,787,153 + HER17_RS21365 0.38 -0.4
4,787,153 + HER17_RS21365 0.38 -0.3
4,787,154 - HER17_RS21365 0.38 +0.4
4,787,176 - HER17_RS21365 0.40 +0.5
4,787,194 - HER17_RS21365 0.41 +0.4
4,787,194 - HER17_RS21365 0.41 +0.0
4,787,213 - HER17_RS21365 0.42 +0.1
4,787,213 - HER17_RS21365 0.42 +0.0
4,787,283 + HER17_RS21365 0.46 -0.9
4,787,283 + HER17_RS21365 0.46 -1.8
4,787,283 + HER17_RS21365 0.46 +0.5
4,787,283 + HER17_RS21365 0.46 +1.4
4,787,284 - HER17_RS21365 0.46 -0.2
4,787,284 - HER17_RS21365 0.46 +0.0
4,787,284 - HER17_RS21365 0.46 +0.9
4,787,284 - HER17_RS21365 0.46 -0.7
4,787,284 - HER17_RS21365 0.46 -0.5
4,787,284 - HER17_RS21365 0.46 -0.2
4,787,284 - HER17_RS21365 0.46 +0.8
4,787,310 + HER17_RS21365 0.48 +0.0
4,787,310 + HER17_RS21365 0.48 +0.2
4,787,310 + HER17_RS21365 0.48 +0.3
4,787,311 - HER17_RS21365 0.48 +0.1
4,787,311 - HER17_RS21365 0.48 +1.1
4,787,357 - HER17_RS21365 0.50 -0.3

Or see this region's nucleotide sequence