Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21335

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,778,360	+				+0.1
4,778,361	-				-0.7
4,778,408	+				+0.5
4,778,408	+				-0.3
4,778,408	+				+0.9
4,778,408	+				+0.4
4,778,408	+				+1.2
4,778,409	-				-2.7
4,778,409	-				-1.3
4,778,409	-				-0.5
4,778,409	-				+0.6
4,778,409	-				+0.3
4,778,415	-				+0.7
4,778,418	-				-0.1
4,778,441	-				-1.3
4,778,474	+				-0.2
4,778,474	+				-0.2
4,778,474	+				-0.1
4,778,475	-				-0.4
4,778,475	-				+0.2
4,778,543	+				+0.6
4,778,544	-				+0.8
4,778,549	-				+0.4
4,778,554	+				+0.1
4,778,554	+				+0.3
4,778,643	-				+0.7
4,778,667	+				+0.8
4,778,668	-				+0.5
4,778,668	-				-0.1
4,778,668	-				-0.4
4,778,671	+				-1.2
4,778,671	+				+0.3
4,778,671	+				-0.2
4,778,672	-				-0.0
4,778,672	-				+0.4
4,778,695	-				-0.6
4,778,703	+				-1.1
4,778,703	+				+0.8
4,778,703	+				-0.4
4,778,704	-				-0.7
4,778,704	-				+0.2
4,778,704	-				+0.7
4,778,704	-				-0.2
4,778,707	+				-0.4
4,778,708	-				+0.2
4,778,708	-				+0.3
4,778,708	-				+0.0
4,778,708	-				+0.1
4,778,724	+				-0.2
4,778,724	+				-0.8
4,778,724	+				+0.5
4,778,724	+				+0.2
4,778,724	+				+0.2
4,778,725	-				-1.3
4,778,725	-				-0.0
4,778,725	-				+1.7
4,778,725	-				-0.0
4,778,727	+				-0.1
4,778,728	-				+1.2
4,778,728	-				+0.2
4,778,765	+				+0.5
4,778,765	+				-0.9
4,778,765	+				-0.2
4,778,765	+				+0.5
4,778,765	+				+0.5
4,778,765	+				+0.3
4,778,766	-				+0.0
4,778,766	-				+0.8
4,778,766	-				-0.4
4,778,766	-				-0.8
4,778,787	+				-0.3
4,778,787	+				+0.5
4,778,788	-				-0.0
4,778,788	-				+0.9
4,778,788	-				+1.4
4,778,813	+				+0.3
4,778,813	+				+0.3
4,778,814	-				+0.8
4,778,839	+				-2.1
4,778,839	+				+0.4
4,778,839	+				+1.2
4,778,840	-				-0.7
4,778,840	-				+0.2
4,778,840	-				+0.4
4,778,840	-				-0.0
4,778,840	-				+0.4
4,778,840	-				+0.1
4,778,840	-				+1.1
4,778,843	+		HER17_RS21330	0.10	-0.6
4,778,843	+		HER17_RS21330	0.10	+0.0
4,778,844	-		HER17_RS21330	0.11	+0.1
4,778,844	-		HER17_RS21330	0.11	+0.1
4,778,844	-		HER17_RS21330	0.11	+0.1
4,778,862	-		HER17_RS21330	0.16	-0.1
4,778,862	-		HER17_RS21330	0.16	+0.1
4,778,871	+		HER17_RS21330	0.19	+0.7
4,778,871	+		HER17_RS21330	0.19	+0.7
4,778,871	+		HER17_RS21330	0.19	-1.2
4,778,871	+		HER17_RS21330	0.19	+0.3
4,778,872	-		HER17_RS21330	0.19	+0.6
4,778,874	+		HER17_RS21330	0.20	+0.5
4,778,874	+		HER17_RS21330	0.20	-0.5
4,778,874	+		HER17_RS21330	0.20	+1.4
4,778,874	+		HER17_RS21330	0.20	+0.7
4,778,875	-		HER17_RS21330	0.20	-0.0
4,778,875	-		HER17_RS21330	0.20	+1.3
4,778,893	+		HER17_RS21330	0.25	-0.4
4,778,894	-		HER17_RS21330	0.26	+0.0
4,778,928	+		HER17_RS21330	0.36	+1.1
4,778,934	+		HER17_RS21330	0.38	+0.9
4,778,934	+		HER17_RS21330	0.38	+0.2
4,778,934	+		HER17_RS21330	0.38	+0.1
4,778,934	+		HER17_RS21330	0.38	+0.3
4,778,935	-		HER17_RS21330	0.38	+0.7
4,778,935	-		HER17_RS21330	0.38	+0.2
4,778,935	-		HER17_RS21330	0.38	+0.1
4,778,935	-		HER17_RS21330	0.38	+0.7
4,778,957	+		HER17_RS21330	0.44	-0.3
4,778,957	+		HER17_RS21330	0.44	+0.3
4,778,957	+		HER17_RS21330	0.44	-0.6
4,778,958	-		HER17_RS21330	0.45	-0.3
4,778,958	-		HER17_RS21330	0.45	+0.1
4,778,958	-		HER17_RS21330	0.45	-0.3
4,778,958	-		HER17_RS21330	0.45	+1.2
4,778,958	-		HER17_RS21330	0.45	-0.3
4,778,958	-		HER17_RS21330	0.45	+1.3
4,778,995	+		HER17_RS21330	0.56	+2.8
4,778,996	-		HER17_RS21330	0.56	+0.2
4,778,996	-		HER17_RS21330	0.56	-0.7
4,778,996	-		HER17_RS21330	0.56	+0.7
4,779,000	+		HER17_RS21330	0.57	+1.4
4,779,000	+		HER17_RS21330	0.57	+0.0
4,779,000	+		HER17_RS21330	0.57	-0.9
4,779,000	+		HER17_RS21330	0.57	+0.6
4,779,000	+		HER17_RS21330	0.57	+0.5
4,779,000	+		HER17_RS21330	0.57	+0.2
4,779,001	-		HER17_RS21330	0.57	+0.4
4,779,001	-		HER17_RS21330	0.57	+0.4
4,779,002	+		HER17_RS21330	0.58	+2.5
4,779,002	+		HER17_RS21330	0.58	-0.3
4,779,002	+		HER17_RS21330	0.58	+1.6
4,779,003	-		HER17_RS21330	0.58	-0.1
4,779,003	-		HER17_RS21330	0.58	+0.2
4,779,003	-		HER17_RS21330	0.58	+0.1
4,779,006	+		HER17_RS21330	0.59	+0.9
4,779,019	-		HER17_RS21330	0.63	-0.3
4,779,045	-		HER17_RS21330	0.71	-0.7
4,779,045	-		HER17_RS21330	0.71	-1.0
4,779,083	+		HER17_RS21330	0.82	+0.9
4,779,141	+				-0.3
4,779,142	-				-1.0
4,779,155	+				+0.5
4,779,155	+				+0.1
4,779,156	-				+0.1
4,779,156	-				+0.5
4,779,156	-				+0.3
4,779,171	-				+1.3
4,779,188	+				-1.0
4,779,188	+				-1.5
4,779,189	-				-1.5
4,779,321	+				+0.1
4,779,323	+				-0.8
4,779,324	-				+0.7
4,779,324	-				+0.1
4,779,324	-				-1.2
4,779,344	+				-1.7
4,779,344	+				+1.8
4,779,345	-				-0.3
4,779,345	-				-0.4
4,779,345	-				-0.6
4,779,345	-				+0.2
4,779,496	+		HER17_RS21335	0.10	-0.2
4,779,496	+		HER17_RS21335	0.10	-1.3
4,779,497	-		HER17_RS21335	0.10	-1.9
4,779,497	-		HER17_RS21335	0.10	+0.4
4,779,497	-		HER17_RS21335	0.10	+0.9
4,779,497	-		HER17_RS21335	0.10	-1.2
4,779,584	+		HER17_RS21335	0.16	-0.6
4,779,584	+		HER17_RS21335	0.16	-0.9
4,779,584	+		HER17_RS21335	0.16	+0.6
4,779,585	-		HER17_RS21335	0.16	+0.1
4,779,652	-		HER17_RS21335	0.21	-0.7
4,779,701	+		HER17_RS21335	0.24	-0.7
4,779,743	+		HER17_RS21335	0.27	+1.9
4,779,750	+		HER17_RS21335	0.27	+0.3
4,779,751	-		HER17_RS21335	0.27	-0.9
4,779,804	+		HER17_RS21335	0.31	-0.2
4,779,805	-		HER17_RS21335	0.31	-1.7
4,779,805	-		HER17_RS21335	0.31	+1.1
4,779,823	+		HER17_RS21335	0.32	+0.3
4,779,823	+		HER17_RS21335	0.32	-1.2
4,779,824	-		HER17_RS21335	0.32	-1.1
4,779,888	+		HER17_RS21335	0.36	-1.9
4,780,000	-		HER17_RS21335	0.44	+0.2
4,780,028	+		HER17_RS21335	0.45	-0.1
4,780,028	+		HER17_RS21335	0.45	-1.5
4,780,029	-		HER17_RS21335	0.46	-1.3
4,780,031	+		HER17_RS21335	0.46	-0.9
4,780,031	+		HER17_RS21335	0.46	+0.0
4,780,031	+		HER17_RS21335	0.46	-0.6
4,780,138	-		HER17_RS21335	0.53	-1.1
4,780,236	+		HER17_RS21335	0.59	-0.9
4,780,237	-		HER17_RS21335	0.59	-0.6
4,780,491	+		HER17_RS21335	0.76	-2.7
4,780,512	-		HER17_RS21335	0.78	-0.8
4,780,519	-		HER17_RS21335	0.78	-0.7
4,780,533	+		HER17_RS21335	0.79	-0.0
4,780,718	+				-1.1
4,780,718	+				-0.9
4,780,719	-				-0.3
4,780,722	+				-1.5
4,780,723	-				-0.5
4,780,772	+				+0.1
4,780,772	+				-0.7
4,780,772	+				-1.2
4,780,772	+				+0.6
4,780,772	+				-3.1
4,780,772	+				-1.6
4,780,773	-				-0.4
4,780,777	+				-0.7
4,780,777	+				-0.9
4,780,778	-				-0.3
4,780,778	-				-1.6
4,780,781	-				+0.5
4,780,781	-				-1.2
4,780,781	-				-0.3
4,780,817	+				-1.0
4,780,818	-				+0.6
4,780,821	-				-0.1
4,780,843	+				+0.6
4,780,844	-				-0.5
4,780,864	+				-1.8
4,780,921	+				-0.8
4,780,939	+				-0.9
4,780,939	+				-0.1
4,780,939	+				+0.3
4,780,940	-				+0.2
4,780,940	-				-0.8
4,780,940	-				+0.3
4,780,940	-				-0.9
4,781,008	-				-0.1
4,781,013	-				+0.6
4,781,052	+				-0.0
4,781,052	+				-0.2
4,781,052	+				-0.0
4,781,052	+				+0.5
4,781,052	+				+0.0
4,781,052	+				+0.2
4,781,214	+				+0.4
4,781,214	+				+1.5
4,781,215	-				+0.3
4,781,215	-				+0.1
4,781,281	+		HER17_RS21340	0.13	-0.3
4,781,281	+		HER17_RS21340	0.13	+0.9
4,781,287	+		HER17_RS21340	0.13	+0.3
4,781,288	-		HER17_RS21340	0.13	+0.7
4,781,288	-		HER17_RS21340	0.13	-1.2
4,781,291	+		HER17_RS21340	0.14	-0.0
4,781,291	+		HER17_RS21340	0.14	+0.8
4,781,291	+		HER17_RS21340	0.14	-1.1
4,781,291	+		HER17_RS21340	0.14	+0.7
4,781,291	+		HER17_RS21340	0.14	-0.1
4,781,291	+		HER17_RS21340	0.14	+0.1
4,781,291	+		HER17_RS21340	0.14	+0.5
4,781,291	+		HER17_RS21340	0.14	-0.0
4,781,291	+		HER17_RS21340	0.14	-0.4
4,781,291	+		HER17_RS21340	0.14	-0.6
4,781,291	+		HER17_RS21340	0.14	+0.6
4,781,291	+		HER17_RS21340	0.14	+0.1
4,781,291	+		HER17_RS21340	0.14	-0.1
4,781,291	+		HER17_RS21340	0.14	+0.5
4,781,292	-		HER17_RS21340	0.14	-0.6
4,781,292	-		HER17_RS21340	0.14	-0.4
4,781,292	-		HER17_RS21340	0.14	-0.9
4,781,292	-		HER17_RS21340	0.14	-0.1
4,781,292	-		HER17_RS21340	0.14	+1.3
4,781,292	-		HER17_RS21340	0.14	-0.4
4,781,292	-		HER17_RS21340	0.14	+0.0
4,781,292	-		HER17_RS21340	0.14	-0.3
4,781,354	+		HER17_RS21340	0.19	-0.1
4,781,355	-		HER17_RS21340	0.19	+0.0
4,781,418	+		HER17_RS21340	0.24	+0.1
4,781,418	+		HER17_RS21340	0.24	+0.1
4,781,427	+		HER17_RS21340	0.25	+0.2
4,781,427	+		HER17_RS21340	0.25	+0.1
4,781,428	-		HER17_RS21340	0.25	-0.0
4,781,559	+		HER17_RS21340	0.36	+0.0
4,781,560	-		HER17_RS21340	0.36	-0.4
4,781,560	-		HER17_RS21340	0.36	-0.2
4,781,710	+		HER17_RS21340	0.49	-1.1
4,781,739	+		HER17_RS21340	0.51	-0.2
4,781,739	+		HER17_RS21340	0.51	+0.2
4,781,740	-		HER17_RS21340	0.51	+0.4
4,781,740	-		HER17_RS21340	0.51	-1.2
4,781,740	-		HER17_RS21340	0.51	-2.1