Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20620

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,618,900	+		HER17_RS20615	0.51	-0.5
4,618,901	-		HER17_RS20615	0.51	+0.1
4,618,938	+		HER17_RS20615	0.53	-0.1
4,618,938	+		HER17_RS20615	0.53	+0.4
4,618,938	+		HER17_RS20615	0.53	-0.6
4,618,970	+		HER17_RS20615	0.55	-0.1
4,618,970	+		HER17_RS20615	0.55	-0.2
4,618,971	-		HER17_RS20615	0.55	+0.0
4,618,971	-		HER17_RS20615	0.55	-1.2
4,619,004	-		HER17_RS20615	0.57	-0.5
4,619,166	-		HER17_RS20615	0.68	+0.0
4,619,184	-		HER17_RS20615	0.69	-1.0
4,619,192	+		HER17_RS20615	0.69	-0.3
4,619,192	+		HER17_RS20615	0.69	+0.3
4,619,192	+		HER17_RS20615	0.69	-1.9
4,619,299	-		HER17_RS20615	0.76	-0.1
4,619,374	-		HER17_RS20615	0.81	-0.8
4,619,374	-		HER17_RS20615	0.81	+0.7
4,619,402	+		HER17_RS20615	0.83	-0.9
4,619,402	+		HER17_RS20615	0.83	+1.7
4,619,460	+		HER17_RS20615	0.86	-0.0
4,619,460	+		HER17_RS20615	0.86	-0.3
4,619,610	+				-0.3
4,619,611	-				-1.9
4,619,634	+				+0.5
4,619,634	+				+0.2
4,619,634	+				+0.7
4,619,635	-				+0.2
4,619,635	-				-0.5
4,619,635	-				+0.5
4,619,653	+				-0.9
4,619,653	+				-0.0
4,619,654	-				+0.4
4,619,654	-				+0.8
4,619,658	+				+0.5
4,619,659	-				-0.4
4,619,659	-				-0.1
4,619,659	-				-0.2
4,619,667	-				+0.4
4,619,723	-				+1.1
4,619,806	+				+0.6
4,619,872	+				+0.2
4,619,872	+				+0.5
4,619,873	-				+0.2
4,619,873	-				-0.1
4,619,879	+				-0.1
4,619,880	-				-0.3
4,619,880	-				+0.3
4,619,880	-				-0.2
4,619,880	-				+0.8
4,619,898	+				+0.7
4,619,899	-				-0.3
4,619,932	+				-0.1
4,619,933	-				+2.4
4,619,933	-				-0.3
4,619,951	+				+1.1
4,619,952	-				-0.0
4,620,272	-		HER17_RS20620	0.27	+0.2
4,620,321	+		HER17_RS20620	0.31	-1.1
4,620,321	+		HER17_RS20620	0.31	+1.1
4,620,322	-		HER17_RS20620	0.31	-0.0
4,620,322	-		HER17_RS20620	0.31	+0.1
4,620,322	-		HER17_RS20620	0.31	-0.0
4,620,333	-		HER17_RS20620	0.32	+0.5
4,620,341	-		HER17_RS20620	0.32	+1.2
4,620,374	+		HER17_RS20620	0.35	+0.6
4,620,566	+		HER17_RS20620	0.49	+0.3
4,620,567	-		HER17_RS20620	0.49	-0.3
4,620,567	-		HER17_RS20620	0.49	+0.4
4,620,601	+		HER17_RS20620	0.51	-0.6
4,620,715	+		HER17_RS20620	0.60	+0.0
4,620,715	+		HER17_RS20620	0.60	-0.8
4,620,715	+		HER17_RS20620	0.60	-0.0
4,620,757	-		HER17_RS20620	0.63	-0.0
4,620,757	-		HER17_RS20620	0.63	-0.6
4,620,800	+		HER17_RS20620	0.66	-0.6
4,620,801	-		HER17_RS20620	0.66	+1.3
4,620,801	-		HER17_RS20620	0.66	-0.7
4,620,810	+		HER17_RS20620	0.66	-0.2
4,620,950	-		HER17_RS20620	0.77	+0.3
4,621,015	+		HER17_RS20620	0.81	-0.0
4,621,015	+		HER17_RS20620	0.81	+0.4
4,621,016	-		HER17_RS20620	0.81	+0.1
4,621,016	-		HER17_RS20620	0.81	+1.3
4,621,016	-		HER17_RS20620	0.81	-0.8
4,621,065	-		HER17_RS20620	0.85	+1.1
4,621,213	+				+0.4
4,621,213	+				-0.1
4,621,214	-				-0.2
4,621,222	+				+0.9
4,621,247	-				-0.8
4,621,247	-				+0.4
4,621,277	+				-1.3
4,621,277	+				+0.6
4,621,277	+				-0.2
4,621,278	-				-0.3
4,621,291	+				-0.1
4,621,292	-				+0.2
4,621,334	+				-0.6
4,621,334	+				-0.8
4,621,334	+				+1.3
4,621,335	-				-1.3
4,621,335	-				-0.4
4,621,381	+				+0.5
4,621,382	-				-0.0
4,621,461	+		HER17_RS20625	0.16	+0.0
4,621,546	-		HER17_RS20625	0.27	-0.1
4,621,663	-		HER17_RS20625	0.42	-0.1
4,621,674	+		HER17_RS20625	0.44	+0.1
4,621,675	-		HER17_RS20625	0.44	+0.2
4,621,765	+		HER17_RS20625	0.56	-0.0
4,621,765	+		HER17_RS20625	0.56	-0.3
4,621,765	+		HER17_RS20625	0.56	+0.1
4,621,765	+		HER17_RS20625	0.56	+0.2
4,621,765	+		HER17_RS20625	0.56	+0.2
4,621,766	-		HER17_RS20625	0.56	-0.1
4,621,766	-		HER17_RS20625	0.56	-1.0
4,621,804	+		HER17_RS20625	0.61	-0.1
4,621,804	+		HER17_RS20625	0.61	+0.4
4,621,804	+		HER17_RS20625	0.61	+0.4
4,621,805	-		HER17_RS20625	0.61	+0.7
4,621,805	-		HER17_RS20625	0.61	+0.1
4,621,887	+		HER17_RS20625	0.71	-0.2
4,622,021	+		HER17_RS20625	0.89	-0.8
4,622,022	-		HER17_RS20625	0.89	-0.6
4,622,026	+		HER17_RS20625	0.89	-1.5
4,622,026	+		HER17_RS20625	0.89	-1.4
4,622,026	+		HER17_RS20625	0.89	-0.4
4,622,027	-		HER17_RS20625	0.89	+0.8
4,622,027	-		HER17_RS20625	0.89	+0.6
4,622,083	+				-0.3
4,622,084	-				+1.1
4,622,084	-				+0.5
4,622,084	-				+0.1
4,622,091	+				+0.4
4,622,092	-				-0.2
4,622,107	+				+0.6
4,622,107	+				+0.2
4,622,108	-				-0.1
4,622,108	-				+0.4
4,622,108	-				+0.3
4,622,138	+				-0.1
4,622,146	-				+0.1
4,622,146	-				+0.2
4,622,228	-				-0.8