Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20385

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,568,542	-		HER17_RS20380	0.54	-0.3
4,568,545	+		HER17_RS20380	0.54	-1.1
4,568,545	+		HER17_RS20380	0.54	-0.2
4,568,679	+		HER17_RS20380	0.61	+0.3
4,568,680	-		HER17_RS20380	0.61	+0.0
4,568,680	-		HER17_RS20380	0.61	-0.2
4,568,711	-		HER17_RS20380	0.63	+0.4
4,568,765	+		HER17_RS20380	0.65	-0.2
4,568,765	+		HER17_RS20380	0.65	-0.2
4,568,765	+		HER17_RS20380	0.65	+0.3
4,568,765	+		HER17_RS20380	0.65	+0.3
4,568,765	+		HER17_RS20380	0.65	-0.9
4,568,765	+		HER17_RS20380	0.65	-0.0
4,568,765	+		HER17_RS20380	0.65	-0.3
4,568,766	-		HER17_RS20380	0.65	-0.1
4,568,766	-		HER17_RS20380	0.65	+0.6
4,568,766	-		HER17_RS20380	0.65	-0.6
4,568,766	-		HER17_RS20380	0.65	-0.4
4,568,766	-		HER17_RS20380	0.65	+0.4
4,568,766	-		HER17_RS20380	0.65	-1.0
4,568,771	-		HER17_RS20380	0.66	+0.0
4,568,771	-		HER17_RS20380	0.66	+0.3
4,568,771	-		HER17_RS20380	0.66	+0.4
4,568,799	+		HER17_RS20380	0.67	-0.4
4,568,806	+		HER17_RS20380	0.67	+0.6
4,568,807	-		HER17_RS20380	0.67	-0.1
4,568,807	-		HER17_RS20380	0.67	-1.1
4,568,807	-		HER17_RS20380	0.67	-0.3
4,568,807	-		HER17_RS20380	0.67	-0.1
4,568,807	-		HER17_RS20380	0.67	+0.1
4,568,901	+		HER17_RS20380	0.72	+0.6
4,568,901	+		HER17_RS20380	0.72	+0.0
4,568,901	+		HER17_RS20380	0.72	+0.3
4,568,901	+		HER17_RS20380	0.72	+0.8
4,568,902	-		HER17_RS20380	0.72	-0.3
4,568,902	-		HER17_RS20380	0.72	+0.9
4,568,902	-		HER17_RS20380	0.72	+0.3
4,568,902	-		HER17_RS20380	0.72	-0.2
4,568,902	-		HER17_RS20380	0.72	-1.1
4,568,902	-		HER17_RS20380	0.72	+0.3
4,568,940	+		HER17_RS20380	0.74	+0.4
4,569,006	+		HER17_RS20380	0.77	-1.5
4,569,006	+		HER17_RS20380	0.77	+0.1
4,569,007	-		HER17_RS20380	0.77	-0.5
4,569,007	-		HER17_RS20380	0.77	+0.6
4,569,068	+		HER17_RS20380	0.81	+0.4
4,569,217	-		HER17_RS20380	0.88	+0.7
4,569,313	+				-0.3
4,569,313	+				-0.0
4,569,313	+				+1.1
4,569,412	-				-0.7
4,569,497	+				+0.1
4,569,511	+				+0.5
4,569,673	-		HER17_RS20385	0.35	-0.2
4,569,678	+		HER17_RS20385	0.36	-0.3
4,569,699	+		HER17_RS20385	0.39	-0.3
4,569,699	+		HER17_RS20385	0.39	-0.7
4,569,700	-		HER17_RS20385	0.39	+0.5
4,569,700	-		HER17_RS20385	0.39	-0.2
4,569,700	-		HER17_RS20385	0.39	-0.1
4,569,700	-		HER17_RS20385	0.39	-0.5
4,569,700	-		HER17_RS20385	0.39	-0.7
4,569,765	+		HER17_RS20385	0.49	+0.6
4,569,824	+		HER17_RS20385	0.58	+0.5
4,569,824	+		HER17_RS20385	0.58	-0.5
4,569,825	-		HER17_RS20385	0.59	-0.1
4,569,825	-		HER17_RS20385	0.59	+0.1
4,569,841	+		HER17_RS20385	0.61	-0.3
4,569,842	-		HER17_RS20385	0.61	+0.0
4,569,865	+		HER17_RS20385	0.65	-0.3
4,569,866	-		HER17_RS20385	0.65	+0.3
4,569,969	+		HER17_RS20385	0.81	-0.0
4,569,969	+		HER17_RS20385	0.81	-0.8
4,569,969	+		HER17_RS20385	0.81	+1.4
4,569,970	-		HER17_RS20385	0.81	+0.0
4,570,091	+				-0.4
4,570,096	+				+0.6
4,570,162	+				+0.3
4,570,162	+				-0.8
4,570,162	+				+0.1
4,570,162	+				-0.6
4,570,163	-				+0.5
4,570,406	-		HER17_RS20390	0.39	+0.1
4,570,460	-		HER17_RS20390	0.46	-0.6
4,570,460	-		HER17_RS20390	0.46	-0.7
4,570,461	+		HER17_RS20390	0.46	-1.1
4,570,461	+		HER17_RS20390	0.46	-0.4
4,570,461	+		HER17_RS20390	0.46	-0.7
4,570,461	+		HER17_RS20390	0.46	-0.4
4,570,462	-		HER17_RS20390	0.47	-0.9
4,570,462	-		HER17_RS20390	0.47	-1.2
4,570,462	-		HER17_RS20390	0.47	-0.2
4,570,462	-		HER17_RS20390	0.47	+0.1
4,570,632	+		HER17_RS20390	0.68	+0.4
4,570,633	-		HER17_RS20390	0.68	-1.8
4,570,719	-		HER17_RS20390	0.79	+0.3
4,570,852	+				-0.3
4,570,852	+				-0.2
4,570,940	+		HER17_RS20395	0.36	-0.4