Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20085

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,504,873	-		HER17_RS20075	0.43	+0.7
4,504,929	+		HER17_RS20075	0.49	+0.1
4,504,930	-		HER17_RS20075	0.49	-0.3
4,504,954	+		HER17_RS20075	0.52	-0.3
4,505,113	+		HER17_RS20075	0.71	+0.9
4,505,166	-		HER17_RS20075	0.77	+0.8
4,505,180	+		HER17_RS20075	0.78	+0.2
4,505,181	-		HER17_RS20075	0.78	-0.9
4,505,216	-		HER17_RS20075	0.83	+1.6
4,505,225	+		HER17_RS20075	0.84	+0.0
4,505,226	-		HER17_RS20075	0.84	+0.5
4,505,274	-		HER17_RS20075	0.89	-0.8
4,505,297	+				+0.3
4,505,314	+				+0.2
4,505,323	-				+2.1
4,505,366	+				-0.4
4,505,382	-				-0.1
4,505,391	+				+0.0
4,505,396	+				+0.5
4,505,396	+				+0.0
4,505,396	+				+0.3
4,505,396	+				-0.0
4,505,397	-				+0.6
4,505,397	-				+0.2
4,505,397	-				+0.2
4,505,397	-				+0.3
4,505,507	+		HER17_RS20080	0.40	+0.0
4,505,554	+		HER17_RS20080	0.58	+0.9
4,505,554	+		HER17_RS20080	0.58	-0.1
4,505,554	+		HER17_RS20080	0.58	+0.2
4,505,667	+				+1.3
4,505,667	+				-0.2
4,505,667	+				-1.3
4,505,668	-				-0.3
4,505,668	-				-0.4
4,505,668	-				+0.1
4,505,668	-				-0.1
4,505,668	-				+1.1
4,505,668	-				+0.2
4,505,671	+				-0.3
4,505,671	+				+1.2
4,505,671	+				-0.4
4,505,672	-				-0.1
4,505,672	-				+0.3
4,505,672	-				+0.0
4,505,675	+				+0.6
4,505,676	-				-0.1
4,505,676	-				-0.7
4,505,676	-				+0.1
4,505,679	+				-0.3
4,505,679	+				+0.3
4,505,687	+				-1.5
4,505,688	-				+1.2
4,505,703	+				+0.6
4,505,739	+				-0.3
4,505,739	+				-0.8
4,505,739	+				+0.6
4,505,739	+				+0.6
4,505,740	-				-1.4
4,505,740	-				-0.9
4,505,740	-				+0.1
4,505,742	+				+0.1
4,505,742	+				-0.4
4,505,743	-				-0.5
4,505,743	-				+0.1
4,505,743	-				-0.0
4,505,743	-				-0.3
4,505,743	-				-0.6
4,505,743	-				-0.1
4,505,743	-				+0.0
4,505,743	-				-1.1
4,505,746	+				+0.3
4,505,746	+				+0.4
4,505,746	+				-0.8
4,505,746	+				-0.5
4,505,746	+				+1.6
4,505,746	+				+0.2
4,505,746	+				+0.0
4,505,747	-				+0.6
4,505,747	-				-0.3
4,505,747	-				-0.9
4,505,747	-				-1.1
4,505,747	-				-0.0
4,505,747	-				+0.0
4,505,747	-				-0.0
4,505,750	+				-2.0
4,505,750	+				+0.1
4,505,750	+				-0.2
4,505,751	-				-0.6
4,505,751	-				-1.1
4,505,751	-				-0.1
4,505,752	+				+0.1
4,505,752	+				+0.2
4,505,752	+				+0.1
4,505,753	-				-0.8
4,505,754	+				+0.3
4,505,755	-				+0.0
4,505,755	-				+0.9
4,505,755	-				-0.1
4,505,755	-				-0.2
4,505,755	-				-0.7
4,505,755	-				+0.5
4,505,762	-				+0.1
4,505,809	+				+0.4
4,505,809	+				+0.2
4,505,809	+				+0.0
4,505,809	+				-0.4
4,505,812	-				+0.0
4,505,824	+				+0.5
4,505,825	-				+0.1
4,505,842	-				+0.1
4,505,842	-				+0.2
4,505,842	-				-0.1
4,505,854	-				+0.5
4,505,854	-				+0.3
4,505,892	+		HER17_RS20085	0.12	+1.0
4,505,892	+		HER17_RS20085	0.12	-0.4
4,505,893	-		HER17_RS20085	0.12	+0.7
4,505,893	-		HER17_RS20085	0.12	+0.2
4,505,893	-		HER17_RS20085	0.12	-0.6
4,505,897	+		HER17_RS20085	0.13	+0.0
4,505,898	-		HER17_RS20085	0.14	+0.4
4,505,898	-		HER17_RS20085	0.14	-1.3
4,505,898	-		HER17_RS20085	0.14	-0.8
4,506,012	+		HER17_RS20085	0.41	-0.1
4,506,012	+		HER17_RS20085	0.41	-0.1
4,506,012	+		HER17_RS20085	0.41	-0.3
4,506,013	-		HER17_RS20085	0.42	+0.3
4,506,159	+		HER17_RS20085	0.77	-1.6
4,506,160	-		HER17_RS20085	0.77	-0.9
4,506,204	-		HER17_RS20085	0.88	-0.3
4,506,204	-		HER17_RS20085	0.88	+0.2
4,506,206	+		HER17_RS20085	0.89	+0.0
4,506,206	+		HER17_RS20085	0.89	-0.0
4,506,206	+		HER17_RS20085	0.89	+0.7
4,506,206	+		HER17_RS20085	0.89	-0.4
4,506,207	-		HER17_RS20085	0.89	+0.8
4,506,207	-		HER17_RS20085	0.89	-0.1
4,506,207	-		HER17_RS20085	0.89	+0.4
4,506,207	-		HER17_RS20085	0.89	+0.4
4,506,207	-		HER17_RS20085	0.89	-0.5
4,506,207	-		HER17_RS20085	0.89	+0.7
4,506,212	+				-0.1
4,506,212	+				-0.3
4,506,212	+				+0.2
4,506,212	+				+0.2
4,506,213	-				-0.3
4,506,213	-				+0.2
4,506,213	-				-1.0
4,506,213	-				+0.3
4,506,213	-				-0.5
4,506,217	+				-0.8
4,506,241	+				+0.0
4,506,261	+				-0.3
4,506,261	+				+1.1
4,506,261	+				+0.3
4,506,262	-				-1.5
4,506,266	+				+0.3
4,506,266	+				+0.7
4,506,266	+				-0.0
4,506,266	+				-0.3
4,506,267	-				+0.1
4,506,320	-				-0.9
4,506,368	+				+0.4
4,506,368	+				-0.2
4,506,368	+				+0.2
4,506,371	+				+0.1
4,506,372	-				-0.2
4,506,372	-				-0.2
4,506,372	-				+1.0
4,506,407	+				-0.2
4,506,407	+				+0.1
4,506,443	+				-0.3
4,506,509	-		HER17_RS20090	0.14	+0.4
4,506,624	-		HER17_RS20090	0.23	-0.2
4,506,629	+		HER17_RS20090	0.23	-0.4
4,506,665	+		HER17_RS20090	0.26	-0.6
4,506,665	+		HER17_RS20090	0.26	+0.4
4,506,665	+		HER17_RS20090	0.26	+1.2
4,506,666	-		HER17_RS20090	0.26	-0.7
4,506,666	-		HER17_RS20090	0.26	+0.4
4,506,677	-		HER17_RS20090	0.27	+0.6
4,506,858	-		HER17_RS20090	0.40	+0.8
4,506,858	-		HER17_RS20090	0.40	-1.3
4,507,023	+		HER17_RS20090	0.53	+0.4
4,507,024	-		HER17_RS20090	0.53	+0.6
4,507,024	-		HER17_RS20090	0.53	+0.2
4,507,051	+		HER17_RS20090	0.55	-0.4
4,507,051	+		HER17_RS20090	0.55	-0.4
4,507,052	-		HER17_RS20090	0.55	+2.3
4,507,057	+		HER17_RS20090	0.55	-0.4
4,507,058	-		HER17_RS20090	0.55	+0.3
4,507,058	-		HER17_RS20090	0.55	-0.8
4,507,127	-		HER17_RS20090	0.60	-0.2
4,507,181	+		HER17_RS20090	0.64	-0.7
4,507,182	-		HER17_RS20090	0.64	+0.6