Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19500

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,381,588	+		HER17_RS19490	0.55	-0.0
4,381,589	-		HER17_RS19490	0.56	-1.2
4,381,595	+		HER17_RS19490	0.57	-1.3
4,381,681	+		HER17_RS19490	0.74	+0.5
4,381,681	+		HER17_RS19490	0.74	+0.7
4,381,682	-		HER17_RS19490	0.74	-0.6
4,381,723	+		HER17_RS19490	0.82	-1.9
4,381,724	-		HER17_RS19490	0.82	-0.8
4,381,724	-		HER17_RS19490	0.82	+0.3
4,381,724	-		HER17_RS19490	0.82	+0.3
4,381,724	-		HER17_RS19490	0.82	+0.5
4,381,805	+				+1.2
4,381,805	+				+0.3
4,381,806	-				-0.3
4,381,810	+				-0.2
4,381,810	+				-0.0
4,381,810	+				-0.2
4,381,811	-				+1.4
4,381,811	-				+0.1
4,381,811	-				+0.6
4,381,824	+				+0.1
4,381,824	+				-0.0
4,381,832	+				-0.7
4,381,832	+				+0.3
4,381,832	+				+0.4
4,381,832	+				-0.2
4,381,833	-				-0.2
4,381,833	-				+1.3
4,381,833	-				-0.6
4,381,833	-				+0.2
4,381,833	-				+1.1
4,381,833	-				-0.5
4,381,923	+				-0.5
4,381,924	-				+0.9
4,381,924	-				-0.7
4,381,924	-				+0.2
4,382,007	+		HER17_RS19495	0.20	-0.5
4,382,007	+		HER17_RS19495	0.20	-0.4
4,382,008	-		HER17_RS19495	0.20	-0.9
4,382,008	-		HER17_RS19495	0.20	-0.2
4,382,025	+		HER17_RS19495	0.24	-1.7
4,382,066	+		HER17_RS19495	0.34	-1.2
4,382,066	+		HER17_RS19495	0.34	+0.1
4,382,066	+		HER17_RS19495	0.34	+0.5
4,382,067	-		HER17_RS19495	0.34	-0.7
4,382,176	-		HER17_RS19495	0.60	+0.4
4,382,176	-		HER17_RS19495	0.60	-1.1
4,382,195	+		HER17_RS19495	0.64	-0.1
4,382,196	-		HER17_RS19495	0.64	-2.0
4,382,253	+		HER17_RS19495	0.78	-0.0
4,382,253	+		HER17_RS19495	0.78	+0.6
4,382,253	+		HER17_RS19495	0.78	+0.7
4,382,254	-		HER17_RS19495	0.78	-1.3
4,382,254	-		HER17_RS19495	0.78	+1.6
4,382,254	-		HER17_RS19495	0.78	+0.5
4,382,254	-		HER17_RS19495	0.78	-1.5
4,382,363	-				+0.0
4,382,372	-				-0.8
4,382,374	+				-0.8
4,382,381	+				-0.1
4,382,381	+				-0.7
4,382,382	-				-0.9
4,382,424	+				-1.0
4,382,425	-				-1.3
4,382,457	-				-1.2
4,382,457	-				+0.0
4,382,457	-				-1.8
4,382,503	+				+0.5
4,382,503	+				+0.2
4,382,503	+				-0.2
4,382,504	-				+1.0
4,382,504	-				+0.3
4,382,504	-				+0.0
4,382,521	+				-2.8
4,382,521	+				+0.2
4,382,522	-				+0.7
4,382,522	-				+0.1
4,382,522	-				+1.5
4,382,523	+				-0.6
4,382,523	+				-0.1
4,382,524	-				+0.3
4,382,553	+				+1.1
4,382,554	-				-0.1
4,382,710	+		HER17_RS19500	0.20	-0.5
4,382,710	+		HER17_RS19500	0.20	+0.3
4,382,710	+		HER17_RS19500	0.20	-0.6
4,382,710	+		HER17_RS19500	0.20	-2.1
4,382,710	+		HER17_RS19500	0.20	+0.8
4,382,734	+		HER17_RS19500	0.22	+0.2
4,382,734	+		HER17_RS19500	0.22	+0.0
4,382,809	+		HER17_RS19500	0.30	-0.0
4,383,018	+		HER17_RS19500	0.50	-0.1
4,383,018	+		HER17_RS19500	0.50	-0.5
4,383,059	+		HER17_RS19500	0.55	-0.9
4,383,060	-		HER17_RS19500	0.55	-0.3
4,383,162	+		HER17_RS19500	0.65	+0.8
4,383,196	+		HER17_RS19500	0.68	-2.0
4,383,196	+		HER17_RS19500	0.68	-0.1
4,383,196	+		HER17_RS19500	0.68	+0.4
4,383,196	+		HER17_RS19500	0.68	+1.2
4,383,197	-		HER17_RS19500	0.68	+0.2
4,383,198	+		HER17_RS19500	0.68	-0.5
4,383,250	-		HER17_RS19500	0.74	+0.3
4,383,250	-		HER17_RS19500	0.74	+0.3
4,383,250	-		HER17_RS19500	0.74	-0.8
4,383,250	-		HER17_RS19500	0.74	+0.1
4,383,385	+		HER17_RS19500	0.87	+0.4
4,383,386	-		HER17_RS19500	0.87	+1.0
4,383,468	+				+0.2
4,383,468	+				-1.5
4,383,469	-				+0.1
4,383,514	+				-0.5
4,383,515	-				-0.3
4,383,566	-				-0.2
4,383,566	-				+0.4
4,383,795	+		HER17_RS19505	0.49	-0.7
4,383,807	+		HER17_RS19505	0.52	-0.4
4,383,827	-		HER17_RS19505	0.56	+0.3
4,383,839	-		HER17_RS19505	0.59	-0.2
4,383,911	+		HER17_RS19505	0.74	+0.2
4,383,942	-		HER17_RS19505	0.81	+0.5
4,383,959	-		HER17_RS19505	0.84	-0.5
4,383,991	+				-0.2
4,383,991	+				-0.3
4,383,992	-				+0.3
4,384,068	+				-0.1
4,384,077	+				-0.1
4,384,079	+				+0.5
4,384,079	+				-0.1
4,384,079	+				+0.2
4,384,079	+				+0.7
4,384,080	-				+0.2
4,384,110	+				+0.9
4,384,110	+				+0.7
4,384,111	-				-0.4
4,384,142	-				+1.0
4,384,238	-				+0.2
4,384,242	+				+0.4
4,384,243	-				-1.3
4,384,256	-				-1.3
4,384,256	-				+0.8
4,384,314	+				+0.3
4,384,314	+				-0.5
4,384,314	+				+0.4
4,384,314	+				+0.4
4,384,314	+				-0.4
4,384,314	+				+0.2
4,384,315	-				-0.1
4,384,315	-				-0.6
4,384,315	-				+0.1
4,384,315	-				+1.6
4,384,315	-				+1.4
4,384,315	-				+0.1
4,384,381	-				-0.1
4,384,444	-				+0.4
4,384,460	-				+0.4
4,384,460	-				-0.0
4,384,467	-				-0.4
4,384,508	-				+0.5
4,384,510	+				-1.0
4,384,511	-				-0.5
4,384,511	-				+0.3
4,384,511	-				+0.1
4,384,511	-				-0.6
4,384,511	-				+1.0
4,384,511	-				-0.3
4,384,511	-				+0.2