Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17575

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,951,661	+				+0.3
3,951,740	-				+0.4
3,951,740	-				+1.6
3,951,881	+				-0.1
3,951,950	+				+0.6
3,951,955	+				-0.6
3,951,955	+				-0.6
3,951,956	-				-0.7
3,951,957	+				-0.1
3,951,957	+				-0.0
3,951,957	+				-0.2
3,951,958	-				+0.8
3,951,958	-				-0.2
3,951,958	-				-0.1
3,951,958	-				+0.3
3,951,958	-				-0.0
3,951,962	+				-0.1
3,951,970	+				-1.1
3,952,090	+		HER17_RS17570	0.13	+1.1
3,952,090	+		HER17_RS17570	0.13	-0.5
3,952,091	-		HER17_RS17570	0.13	+1.2
3,952,091	-		HER17_RS17570	0.13	+1.8
3,952,091	-		HER17_RS17570	0.13	-0.6
3,952,100	+		HER17_RS17570	0.15	+0.9
3,952,101	-		HER17_RS17570	0.15	+1.0
3,952,106	+		HER17_RS17570	0.16	-1.0
3,952,107	-		HER17_RS17570	0.16	+0.0
3,952,165	-		HER17_RS17570	0.27	-0.2
3,952,191	+		HER17_RS17570	0.32	+0.2
3,952,192	-		HER17_RS17570	0.32	+0.1
3,952,192	-		HER17_RS17570	0.32	-0.3
3,952,211	+		HER17_RS17570	0.35	-0.8
3,952,224	+		HER17_RS17570	0.38	-0.6
3,952,297	+		HER17_RS17570	0.51	-0.3
3,952,298	-		HER17_RS17570	0.52	+0.6
3,952,316	+		HER17_RS17570	0.55	+0.4
3,952,345	+		HER17_RS17570	0.60	-0.4
3,952,504	+				-0.5
3,952,504	+				+0.0
3,952,504	+				-0.0
3,952,504	+				+0.5
3,952,504	+				-0.3
3,952,504	+				-0.1
3,952,504	+				-0.5
3,952,504	+				+0.0
3,952,504	+				+0.2
3,952,505	-				-2.2
3,952,505	-				+0.4
3,952,509	+				+0.3
3,952,510	-				+0.3
3,952,650	+				-0.3
3,952,651	-				+1.2
3,952,651	-				+0.3
3,952,651	-				-0.1
3,952,651	-				+0.7
3,952,651	-				-0.8
3,952,651	-				+0.0
3,952,831	-		HER17_RS17575	0.32	+0.4
3,952,831	-		HER17_RS17575	0.32	-0.4
3,952,861	-		HER17_RS17575	0.35	+0.2
3,952,918	+		HER17_RS17575	0.42	-0.7
3,952,918	+		HER17_RS17575	0.42	+0.0
3,952,919	-		HER17_RS17575	0.43	+1.3
3,952,919	-		HER17_RS17575	0.43	+1.7
3,952,919	-		HER17_RS17575	0.43	-0.8
3,952,919	-		HER17_RS17575	0.43	+0.4
3,953,020	+		HER17_RS17575	0.55	-0.5
3,953,020	+		HER17_RS17575	0.55	-0.6
3,953,021	-		HER17_RS17575	0.55	-1.3
3,953,021	-		HER17_RS17575	0.55	-0.2
3,953,021	-		HER17_RS17575	0.55	-0.2
3,953,075	+		HER17_RS17575	0.62	-2.1
3,953,075	+		HER17_RS17575	0.62	-0.6
3,953,075	+		HER17_RS17575	0.62	+0.8
3,953,075	+		HER17_RS17575	0.62	+0.1
3,953,076	-		HER17_RS17575	0.62	-0.7
3,953,100	+		HER17_RS17575	0.65	-1.1
3,953,101	-		HER17_RS17575	0.65	+1.4
3,953,101	-		HER17_RS17575	0.65	+1.7
3,953,167	+		HER17_RS17575	0.74	-0.2
3,953,168	-		HER17_RS17575	0.74	+0.2
3,953,168	-		HER17_RS17575	0.74	-1.3
3,953,168	-		HER17_RS17575	0.74	-0.1
3,953,306	-				+0.0
3,953,432	+				-0.4
3,953,432	+				+0.1
3,953,432	+				+0.4
3,953,432	+				-1.1
3,953,432	+				-1.0
3,953,436	+				-0.8
3,953,437	-				+0.2
3,953,472	+				-0.5
3,953,472	+				-1.7
3,953,473	-				-0.7
3,953,473	-				+0.9
3,953,473	-				+1.4
3,953,474	+				-0.5
3,953,474	+				+0.1
3,953,474	+				-0.1
3,953,474	+				-0.9
3,953,474	+				-0.5
3,953,474	+				+0.6
3,953,475	-				+0.4
3,953,475	-				-0.5
3,953,475	-				+0.2
3,953,475	-				-1.0
3,953,475	-				+1.0
3,953,475	-				-0.3
3,953,503	+				-1.6
3,953,549	-				+0.4
3,953,566	+				-0.3
3,953,567	-				+0.7
3,953,581	+				+0.3
3,953,665	-				+0.4
3,953,675	-		HER17_RS17580	0.11	-0.1
3,953,783	+		HER17_RS17580	0.21	+0.4
3,953,783	+		HER17_RS17580	0.21	-0.3
3,953,783	+		HER17_RS17580	0.21	+0.6
3,953,792	-		HER17_RS17580	0.22	-0.5
3,953,885	+		HER17_RS17580	0.30	+0.7
3,953,885	+		HER17_RS17580	0.30	+0.1
3,953,886	-		HER17_RS17580	0.30	+0.2
3,953,886	-		HER17_RS17580	0.30	+0.1
3,953,886	-		HER17_RS17580	0.30	-0.4
3,953,886	-		HER17_RS17580	0.30	-0.1
3,953,886	-		HER17_RS17580	0.30	-0.0
3,953,943	+		HER17_RS17580	0.36	+1.1
3,953,948	-		HER17_RS17580	0.36	-0.9
3,953,953	+		HER17_RS17580	0.37	-0.4
3,953,954	-		HER17_RS17580	0.37	-0.8
3,953,963	-		HER17_RS17580	0.38	-0.3
3,954,085	+		HER17_RS17580	0.49	-0.5
3,954,101	+		HER17_RS17580	0.51	-1.1
3,954,102	-		HER17_RS17580	0.51	+0.3
3,954,110	+		HER17_RS17580	0.51	+0.6
3,954,110	+		HER17_RS17580	0.51	+0.5
3,954,111	-		HER17_RS17580	0.51	-2.0
3,954,111	-		HER17_RS17580	0.51	-0.3
3,954,111	-		HER17_RS17580	0.51	+0.2
3,954,126	-		HER17_RS17580	0.53	-0.5
3,954,171	+		HER17_RS17580	0.57	-0.1
3,954,172	-		HER17_RS17580	0.57	+1.4
3,954,212	+		HER17_RS17580	0.61	+0.4
3,954,212	+		HER17_RS17580	0.61	+0.3
3,954,213	-		HER17_RS17580	0.61	+0.3
3,954,213	-		HER17_RS17580	0.61	+0.2
3,954,213	-		HER17_RS17580	0.61	-0.3
3,954,299	+		HER17_RS17580	0.69	-0.4
3,954,299	+		HER17_RS17580	0.69	+0.6
3,954,300	-		HER17_RS17580	0.69	-0.2
3,954,300	-		HER17_RS17580	0.69	-0.8
3,954,300	-		HER17_RS17580	0.69	+0.7
3,954,333	+		HER17_RS17580	0.72	+1.0