Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15305

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,429,093	+		HER17_RS15295	0.27	+0.3
3,429,093	+		HER17_RS15295	0.27	-0.1
3,429,094	-		HER17_RS15295	0.27	-0.1
3,429,152	-		HER17_RS15295	0.35	-0.2
3,429,166	+		HER17_RS15295	0.37	-0.8
3,429,166	+		HER17_RS15295	0.37	-0.5
3,429,167	-		HER17_RS15295	0.38	+0.1
3,429,167	-		HER17_RS15295	0.38	-0.5
3,429,167	-		HER17_RS15295	0.38	+0.4
3,429,389	+		HER17_RS15295	0.69	+0.5
3,429,390	-		HER17_RS15295	0.69	+0.9
3,429,415	+		HER17_RS15295	0.72	-0.4
3,429,416	-		HER17_RS15295	0.73	-1.5
3,429,416	-		HER17_RS15295	0.73	-0.1
3,429,438	-		HER17_RS15295	0.76	+0.2
3,429,438	-		HER17_RS15295	0.76	+0.3
3,429,438	-		HER17_RS15295	0.76	-1.4
3,429,514	-		HER17_RS15295	0.86	-0.6
3,429,514	-		HER17_RS15295	0.86	-0.0
3,429,644	+				+1.4
3,429,644	+				+0.4
3,429,683	+				-0.8
3,429,702	-				-1.5
3,429,724	+				+0.4
3,429,725	-				-1.0
3,429,747	+				+0.1
3,429,747	+				+0.8
3,429,747	+				-0.8
3,429,748	-				-0.7
3,429,752	+				-0.9
3,429,752	+				-0.2
3,429,764	-				+0.2
3,429,764	-				+0.1
3,429,764	-				-0.7
3,429,764	-				+0.3
3,429,769	+				+2.0
3,429,769	+				+0.2
3,429,770	-				+1.1
3,429,770	-				+0.8
3,429,770	-				+0.9
3,429,770	-				+0.1
3,429,782	+				-0.4
3,429,782	+				+0.3
3,429,786	+				+0.1
3,429,787	-				-0.0
3,429,791	-				-0.3
3,429,805	-				+1.3
3,429,829	+				-0.1
3,429,829	+				-0.2
3,429,830	-				-0.3
3,429,830	-				+0.1
3,429,830	-				-0.5
3,429,872	+				+0.3
3,429,872	+				-0.2
3,429,873	-				+0.1
3,429,873	-				+0.1
3,429,874	+				-0.3
3,429,874	+				+0.3
3,429,874	+				-1.5
3,429,874	+				-0.4
3,429,874	+				-0.8
3,429,874	+				+0.5
3,429,875	-				-0.0
3,429,875	-				-0.1
3,429,875	-				-0.6
3,429,875	-				-0.3
3,429,956	+				-2.1
3,429,957	-				-0.2
3,430,000	+				-0.6
3,430,090	-				+0.2
3,430,090	-				-0.1
3,430,112	+		HER17_RS15305	0.10	+0.3
3,430,112	+		HER17_RS15305	0.10	-0.4
3,430,112	+		HER17_RS15305	0.10	-0.2
3,430,113	-		HER17_RS15305	0.10	-0.8
3,430,201	+		HER17_RS15305	0.34	-0.5
3,430,237	+		HER17_RS15305	0.43	+0.5
3,430,266	-		HER17_RS15305	0.51	-0.2
3,430,266	-		HER17_RS15305	0.51	-0.4
3,430,266	-		HER17_RS15305	0.51	-1.2
3,430,266	-		HER17_RS15305	0.51	+0.9
3,430,266	-		HER17_RS15305	0.51	-0.2
3,430,361	+		HER17_RS15305	0.76	-0.2