Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15240

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS15230 and HER17_RS15235 are separated by 194 nucleotidesHER17_RS15235 and HER17_RS15240 are separated by 1 nucleotidesHER17_RS15240 and HER17_RS15245 are separated by 33 nucleotides HER17_RS15230: HER17_RS15230 - nicotinate-nucleotide adenylyltransferase, at 3,417,347 to 3,418,036 _RS15230 HER17_RS15235: HER17_RS15235 - ribosome silencing factor, at 3,418,231 to 3,418,548 _RS15235 HER17_RS15240: HER17_RS15240 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 3,418,550 to 3,419,020 _RS15240 HER17_RS15245: HER17_RS15245 - peptidoglycan DD-transpeptidase MrdA, at 3,419,054 to 3,420,958 _RS15245 Position (kb) 3418 3419 3420Strain fitness (log2 ratio) -1 0 1at 3418.028 kb on + strandat 3418.035 kb on - strandat 3418.069 kb on + strandat 3418.069 kb on + strandat 3418.070 kb on - strandat 3418.070 kb on - strandat 3418.071 kb on + strandat 3418.094 kb on + strandat 3418.094 kb on + strandat 3418.097 kb on - strandat 3418.097 kb on - strandat 3418.097 kb on - strandat 3418.097 kb on - strandat 3418.266 kb on + strand, within HER17_RS15235at 3418.266 kb on + strand, within HER17_RS15235at 3418.266 kb on + strand, within HER17_RS15235at 3418.280 kb on + strand, within HER17_RS15235at 3418.280 kb on + strand, within HER17_RS15235at 3418.305 kb on + strand, within HER17_RS15235at 3418.336 kb on + strand, within HER17_RS15235at 3418.336 kb on + strand, within HER17_RS15235at 3418.344 kb on + strand, within HER17_RS15235at 3418.362 kb on + strand, within HER17_RS15235at 3418.380 kb on + strand, within HER17_RS15235at 3418.475 kb on + strand, within HER17_RS15235at 3418.522 kb on + strandat 3418.529 kb on + strandat 3418.549 kb on + strandat 3418.762 kb on + strand, within HER17_RS15240at 3418.815 kb on + strand, within HER17_RS15240at 3419.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,418,028 + -1.1
3,418,035 - +0.2
3,418,069 + -0.2
3,418,069 + -0.3
3,418,070 - -0.3
3,418,070 - +0.0
3,418,071 + -0.7
3,418,094 + -1.5
3,418,094 + +0.5
3,418,097 - +0.2
3,418,097 - -1.1
3,418,097 - +0.2
3,418,097 - -0.4
3,418,266 + HER17_RS15235 0.11 +1.4
3,418,266 + HER17_RS15235 0.11 +0.3
3,418,266 + HER17_RS15235 0.11 -0.0
3,418,280 + HER17_RS15235 0.15 +0.2
3,418,280 + HER17_RS15235 0.15 -0.7
3,418,305 + HER17_RS15235 0.23 +0.3
3,418,336 + HER17_RS15235 0.33 +0.9
3,418,336 + HER17_RS15235 0.33 +1.1
3,418,344 + HER17_RS15235 0.36 +0.9
3,418,362 + HER17_RS15235 0.41 -0.5
3,418,380 + HER17_RS15235 0.47 -0.1
3,418,475 + HER17_RS15235 0.77 +0.0
3,418,522 + -0.6
3,418,529 + +0.4
3,418,549 + +0.4
3,418,762 + HER17_RS15240 0.45 -0.4
3,418,815 + HER17_RS15240 0.56 -0.2
3,419,026 + -0.1

Or see this region's nucleotide sequence