Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14900

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,344,309	+				-1.2
3,344,309	+				-1.2
3,344,310	-				+0.8
3,344,310	-				+0.5
3,344,310	-				-0.3
3,344,394	-		HER17_RS14885	0.28	+0.5
3,344,400	-		HER17_RS14885	0.30	+0.4
3,344,438	+		HER17_RS14885	0.39	-0.8
3,344,488	+		HER17_RS14885	0.51	-0.9
3,344,532	+		HER17_RS14885	0.62	+0.5
3,344,532	+		HER17_RS14885	0.62	-1.4
3,344,532	+		HER17_RS14885	0.62	+0.3
3,344,532	+		HER17_RS14885	0.62	-0.3
3,344,533	-		HER17_RS14885	0.62	-1.6
3,344,533	-		HER17_RS14885	0.62	+1.0
3,344,600	+		HER17_RS14885	0.79	-0.1
3,344,600	+		HER17_RS14885	0.79	-1.6
3,344,601	-		HER17_RS14885	0.79	+0.8
3,344,602	+		HER17_RS14885	0.80	-0.6
3,344,602	+		HER17_RS14885	0.80	-1.8
3,344,647	+				+0.4
3,344,648	-				-1.4
3,344,687	+				-0.6
3,344,688	-				+0.2
3,344,688	-				+0.6
3,344,718	+				+0.1
3,344,718	+				+0.0
3,344,720	+				+0.3
3,344,721	-				+0.3
3,344,769	+				-1.1
3,344,770	-				-0.6
3,344,773	+				+1.6
3,344,774	-				-1.3
3,344,797	+				+0.7
3,344,797	+				-0.6
3,344,797	+				-1.8
3,344,797	+				+0.1
3,344,797	+				-0.3
3,344,798	-				+0.4
3,344,798	-				+0.6
3,344,835	-				-0.0
3,345,016	+		HER17_RS14890	0.67	+0.9
3,345,016	+		HER17_RS14890	0.67	-0.0
3,345,017	-		HER17_RS14890	0.68	-0.0
3,345,017	-		HER17_RS14890	0.68	-1.3
3,345,046	-		HER17_RS14890	0.78	-0.4
3,345,072	+		HER17_RS14890	0.86	-0.2
3,345,116	+				-0.4
3,345,116	+				-0.2
3,345,117	-				+0.1
3,345,217	+				-1.4
3,345,224	+				-2.1
3,345,230	-				-1.4
3,345,230	-				-1.2
3,345,238	+				-0.6
3,345,239	-				-1.6
3,345,239	-				-0.5
3,345,239	-				-0.5
3,345,239	-				+0.9
3,345,239	-				-1.2
3,345,239	-				-0.8
3,345,242	+				-0.9
3,345,242	+				-0.0
3,345,242	+				-0.9
3,345,243	-				+0.2
3,345,243	-				+1.7
3,345,243	-				-0.6
3,345,245	+				-0.1
3,345,246	-				-0.2
3,345,246	-				+0.5
3,345,249	+				-1.8
3,345,249	+				-1.0
3,345,249	+				-1.0
3,345,250	-				-0.4
3,345,250	-				+0.2
3,345,250	-				-0.8
3,345,250	-				-1.7
3,345,250	-				+0.2
3,345,302	+				-2.1
3,345,302	+				-2.7
3,345,302	+				-0.4
3,345,303	-				-1.4
3,345,303	-				-2.4
3,345,306	-				+0.8
3,345,318	+				-1.2
3,345,319	-				-1.7
3,345,453	+		HER17_RS14900	0.19	-2.9
3,345,454	-		HER17_RS14900	0.19	-1.4
3,345,454	-		HER17_RS14900	0.19	-1.8
3,345,538	-		HER17_RS14900	0.26	-2.8
3,345,695	+		HER17_RS14900	0.40	-1.1
3,345,696	-		HER17_RS14900	0.40	-2.1
3,345,696	-		HER17_RS14900	0.40	-2.1
3,345,705	+		HER17_RS14900	0.41	-0.2
3,345,710	+		HER17_RS14900	0.41	-2.8
3,345,821	+		HER17_RS14900	0.51	-1.5
3,345,912	-		HER17_RS14900	0.59	-3.6
3,345,912	-		HER17_RS14900	0.59	-1.4
3,345,912	-		HER17_RS14900	0.59	-0.5
3,345,915	-		HER17_RS14900	0.59	-1.8
3,345,946	+		HER17_RS14900	0.62	-1.0
3,345,982	+		HER17_RS14900	0.65	-1.4
3,345,982	+		HER17_RS14900	0.65	-2.2
3,346,146	-		HER17_RS14900	0.79	-1.6
3,346,146	-		HER17_RS14900	0.79	-0.8
3,346,230	+		HER17_RS14900	0.87	-1.2
3,346,231	-		HER17_RS14900	0.87	-2.1
3,346,381	-				-2.2
3,346,420	+				-3.3
3,346,421	-				-0.8
3,346,516	+				-2.2
3,346,516	+				-1.2
3,346,517	-				-1.5
3,346,518	+				-2.4
3,346,518	+				-2.6
3,346,518	+				-0.5
3,346,519	-				-1.6
3,346,552	+		HER17_RS14905	0.10	+0.6
3,346,885	-		HER17_RS14905	0.31	-1.6
3,346,922	-		HER17_RS14905	0.34	-1.4
3,346,922	-		HER17_RS14905	0.34	-2.5
3,346,944	-		HER17_RS14905	0.35	-0.8
3,346,990	-		HER17_RS14905	0.38	-1.8
3,347,000	-		HER17_RS14905	0.39	-1.0
3,347,065	+		HER17_RS14905	0.43	-1.2
3,347,112	+		HER17_RS14905	0.46	-2.2
3,347,113	-		HER17_RS14905	0.46	-2.8
3,347,219	+		HER17_RS14905	0.53	+0.2
3,347,255	+		HER17_RS14905	0.55	-0.2
3,347,349	+		HER17_RS14905	0.61	-1.2
3,347,349	+		HER17_RS14905	0.61	-0.8
3,347,350	-		HER17_RS14905	0.61	-0.8
3,347,350	-		HER17_RS14905	0.61	-0.2
3,347,350	-		HER17_RS14905	0.61	-2.4