Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14565

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS14555 and HER17_RS14560 overlap by 4 nucleotidesHER17_RS14560 and HER17_RS14565 are separated by 66 nucleotidesHER17_RS14565 and HER17_RS14570 are separated by 1 nucleotidesHER17_RS14570 and HER17_RS14575 are separated by 48 nucleotides HER17_RS14555: HER17_RS14555 - glycosyltransferase, at 3,274,246 to 3,275,433 _RS14555 HER17_RS14560: HER17_RS14560 - transferase, at 3,275,430 to 3,275,921 _RS14560 HER17_RS14565: HER17_RS14565 - oligosaccharide repeat unit polymerase, at 3,275,988 to 3,277,193 _RS14565 HER17_RS14570: HER17_RS14570 - glycosyltransferase, at 3,277,195 to 3,278,055 _RS14570 HER17_RS14575: HER17_RS14575 - O-antigen translocase, at 3,278,104 to 3,279,369 _RS14575 Position (kb) 3275 3276 3277 3278Strain fitness (log2 ratio) -2 -1 0 1at 3275.020 kb on + strand, within HER17_RS14555at 3275.127 kb on + strand, within HER17_RS14555at 3275.338 kb on + strandat 3275.519 kb on + strand, within HER17_RS14560at 3275.553 kb on + strand, within HER17_RS14560at 3275.594 kb on + strand, within HER17_RS14560at 3275.935 kb on - strandat 3276.097 kb on + strandat 3276.101 kb on + strandat 3276.143 kb on - strand, within HER17_RS14565at 3276.242 kb on - strand, within HER17_RS14565at 3276.282 kb on - strand, within HER17_RS14565at 3276.282 kb on - strand, within HER17_RS14565at 3276.300 kb on - strand, within HER17_RS14565at 3276.327 kb on - strand, within HER17_RS14565at 3277.405 kb on + strand, within HER17_RS14570at 3277.516 kb on + strand, within HER17_RS14570at 3277.599 kb on + strand, within HER17_RS14570at 3277.650 kb on + strand, within HER17_RS14570

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,275,020 + HER17_RS14555 0.65 +0.0
3,275,127 + HER17_RS14555 0.74 +0.7
3,275,338 + +0.4
3,275,519 + HER17_RS14560 0.18 -0.8
3,275,553 + HER17_RS14560 0.25 -1.8
3,275,594 + HER17_RS14560 0.33 -0.9
3,275,935 - +0.4
3,276,097 + +0.4
3,276,101 + -0.4
3,276,143 - HER17_RS14565 0.13 +0.2
3,276,242 - HER17_RS14565 0.21 -0.4
3,276,282 - HER17_RS14565 0.24 +0.8
3,276,282 - HER17_RS14565 0.24 +0.6
3,276,300 - HER17_RS14565 0.26 +0.1
3,276,327 - HER17_RS14565 0.28 +0.5
3,277,405 + HER17_RS14570 0.24 -0.8
3,277,516 + HER17_RS14570 0.37 +1.0
3,277,599 + HER17_RS14570 0.47 -0.4
3,277,650 + HER17_RS14570 0.53 -2.0

Or see this region's nucleotide sequence