Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14380

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,232,754	+				+0.4
3,232,755	-				-0.3
3,232,755	-				-0.3
3,232,906	+				+0.1
3,232,906	+				-0.1
3,232,937	-				+0.0
3,232,937	-				+0.2
3,232,937	-				-0.3
3,232,937	-				+0.4
3,232,937	-				-0.1
3,233,020	+		HER17_RS14375	0.20	-0.2
3,233,020	+		HER17_RS14375	0.20	-0.1
3,233,159	+		HER17_RS14375	0.40	+0.6
3,233,160	-		HER17_RS14375	0.41	-0.7
3,233,160	-		HER17_RS14375	0.41	-0.1
3,233,194	+		HER17_RS14375	0.46	+0.5
3,233,194	+		HER17_RS14375	0.46	-0.1
3,233,194	+		HER17_RS14375	0.46	-0.0
3,233,326	+		HER17_RS14375	0.65	+0.0
3,233,326	+		HER17_RS14375	0.65	+1.3
3,233,470	-		HER17_RS14375	0.86	+0.1
3,233,470	-		HER17_RS14375	0.86	+1.2
3,233,512	+				+0.8
3,233,513	-				+2.9
3,233,513	-				+0.6
3,233,545	+				-0.3
3,233,545	+				-0.1
3,233,546	-				+0.7
3,233,546	-				-0.9
3,233,546	-				-0.6
3,233,546	-				+0.5
3,233,609	+				-0.6
3,233,610	-				+1.0
3,233,631	-				+0.3
3,233,633	+				-0.4
3,233,633	+				-0.6
3,233,671	-				-0.8
3,233,671	-				+0.1
3,233,878	-		HER17_RS14380	0.83	-0.3
3,233,923	+				-0.6
3,233,924	-				+0.0
3,233,932	-				+0.0
3,233,932	-				+0.2
3,233,985	+		HER17_RS14385	0.19	+0.2
3,234,045	+		HER17_RS14385	0.37	-0.3
3,234,120	-		HER17_RS14385	0.61	+0.4
3,234,149	+		HER17_RS14385	0.70	+0.1
3,234,244	-				+0.5
3,234,250	-				+1.0
3,234,257	+				-0.1
3,234,278	+				+0.1
3,234,283	+				+0.1
3,234,283	+				-0.1
3,234,303	+				+0.8
3,234,327	+				+0.2
3,234,327	+				-0.3
3,234,327	+				-1.0
3,234,328	-				-0.2
3,234,328	-				+0.4
3,234,349	+				-0.0
3,234,366	-				-1.0
3,234,380	-				+0.1
3,234,460	+		HER17_RS14390	0.13	+1.6
3,234,460	+		HER17_RS14390	0.13	+0.5
3,234,460	+		HER17_RS14390	0.13	-0.9
3,234,461	-		HER17_RS14390	0.14	-0.7
3,234,463	+		HER17_RS14390	0.14	+1.1
3,234,464	-		HER17_RS14390	0.14	+0.3
3,234,472	+		HER17_RS14390	0.15	-0.4
3,234,473	-		HER17_RS14390	0.15	-0.5
3,234,473	-		HER17_RS14390	0.15	+0.4
3,234,473	-		HER17_RS14390	0.15	-2.0
3,234,500	-		HER17_RS14390	0.18	+0.0
3,234,527	+		HER17_RS14390	0.21	+0.1
3,234,532	+		HER17_RS14390	0.22	+1.1
3,234,552	+		HER17_RS14390	0.24	+0.2
3,234,552	+		HER17_RS14390	0.24	-0.2
3,234,552	+		HER17_RS14390	0.24	+0.1
3,234,552	+		HER17_RS14390	0.24	-0.5
3,234,552	+		HER17_RS14390	0.24	+0.8
3,234,571	+		HER17_RS14390	0.27	+0.1
3,234,616	+		HER17_RS14390	0.32	+0.9
3,234,619	+		HER17_RS14390	0.32	+0.4
3,234,619	+		HER17_RS14390	0.32	+0.2
3,234,619	+		HER17_RS14390	0.32	-0.4
3,234,620	-		HER17_RS14390	0.32	-0.1
3,234,620	-		HER17_RS14390	0.32	-1.0
3,234,635	-		HER17_RS14390	0.34	-0.7
3,234,706	+		HER17_RS14390	0.43	-0.6
3,234,706	+		HER17_RS14390	0.43	+0.6
3,234,756	-		HER17_RS14390	0.49	-1.7
3,234,756	-		HER17_RS14390	0.49	+0.3
3,234,758	+		HER17_RS14390	0.49	+0.9
3,234,766	+		HER17_RS14390	0.50	-0.2
3,234,766	+		HER17_RS14390	0.50	+0.0
3,234,766	+		HER17_RS14390	0.50	+0.4
3,234,767	-		HER17_RS14390	0.50	-0.4
3,234,767	-		HER17_RS14390	0.50	-0.1
3,234,920	-		HER17_RS14390	0.68	-1.2