Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS13410

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,971,197	+		HER17_RS13405	0.43	-0.8
2,971,198	-		HER17_RS13405	0.43	-0.2
2,971,198	-		HER17_RS13405	0.43	-0.3
2,971,198	-		HER17_RS13405	0.43	-1.0
2,971,198	-		HER17_RS13405	0.43	+0.2
2,971,453	+		HER17_RS13405	0.69	-0.2
2,971,575	+		HER17_RS13405	0.81	+0.4
2,971,640	+		HER17_RS13405	0.88	+0.1
2,971,641	-		HER17_RS13405	0.88	+0.6
2,971,776	+				+1.3
2,971,866	+				-0.8
2,971,866	+				-2.1
2,971,867	-				-0.8
2,972,026	+				+0.1
2,972,031	+				-1.0
2,972,032	-				+0.9
2,972,046	-				+0.3
2,972,056	-				-1.0
2,972,107	+				-0.3
2,972,108	-				+0.3
2,972,108	-				+0.7
2,972,122	+				-0.5
2,972,123	-				-0.3
2,972,123	-				-0.1
2,972,147	+				+0.9
2,972,148	-				-0.5
2,972,148	-				+0.2
2,972,154	-				-0.2
2,972,154	-				-0.1
2,972,154	-				-0.5
2,972,154	-				-0.9
2,972,154	-				+0.0
2,972,156	+				+0.4
2,972,156	+				-0.5
2,972,157	-				-0.3
2,972,172	+				+0.3
2,972,183	-				+1.6
2,972,183	-				-1.6
2,972,311	+		HER17_RS13410	0.14	+0.7
2,972,312	-		HER17_RS13410	0.14	+0.1
2,972,312	-		HER17_RS13410	0.14	+0.3
2,972,437	+		HER17_RS13410	0.27	+1.8
2,972,485	-		HER17_RS13410	0.32	-0.1
2,972,485	-		HER17_RS13410	0.32	-0.0
2,972,554	-		HER17_RS13410	0.40	-1.2
2,972,554	-		HER17_RS13410	0.40	-0.3
2,972,566	-		HER17_RS13410	0.41	-0.5
2,972,627	+		HER17_RS13410	0.48	+0.1
2,972,627	+		HER17_RS13410	0.48	-2.2
2,972,835	+		HER17_RS13410	0.70	+0.3
2,972,836	-		HER17_RS13410	0.70	+0.4
2,972,837	+		HER17_RS13410	0.70	-0.4
2,972,837	+		HER17_RS13410	0.70	+0.4
2,972,837	+		HER17_RS13410	0.70	-0.1
2,972,837	+		HER17_RS13410	0.70	-0.1
2,972,837	+		HER17_RS13410	0.70	+0.7
2,972,837	+		HER17_RS13410	0.70	-1.4
2,972,837	+		HER17_RS13410	0.70	-0.2
2,972,838	-		HER17_RS13410	0.70	+0.3
2,972,838	-		HER17_RS13410	0.70	-0.2
2,972,838	-		HER17_RS13410	0.70	+0.5
2,972,838	-		HER17_RS13410	0.70	-0.1
2,972,838	-		HER17_RS13410	0.70	+0.3
2,972,838	-		HER17_RS13410	0.70	-0.3
2,972,838	-		HER17_RS13410	0.70	-0.6
2,973,048	+				+0.0
2,973,111	+				-0.1
2,973,111	+				-1.2
2,973,113	+				+0.3
2,973,114	-				-0.0
2,973,114	-				+0.8
2,973,114	-				-0.2
2,973,288	+		HER17_RS13415	0.46	-2.1
2,973,288	+		HER17_RS13415	0.46	+0.5
2,973,289	-		HER17_RS13415	0.46	+1.3
2,973,434	+		HER17_RS13415	0.79	+1.3
2,973,435	-		HER17_RS13415	0.80	-0.2
2,973,435	-		HER17_RS13415	0.80	+0.1
2,973,510	+				-0.4
2,973,510	+				+0.1
2,973,510	+				-0.4
2,973,511	-				+0.6
2,973,511	-				+0.1
2,973,511	-				+0.6
2,973,511	-				+0.1
2,973,511	-				-0.3
2,973,553	-				-0.9
2,973,565	+				+1.1
2,973,566	-				+0.3
2,973,587	+				+1.1
2,973,587	+				+0.0
2,973,587	+				+0.4
2,973,587	+				+1.1
2,973,588	-				-0.0
2,973,588	-				+0.1
2,973,588	-				+0.0
2,973,727	+				-0.2
2,973,778	+		HER17_RS13420	0.11	-2.1
2,973,793	+		HER17_RS13420	0.12	-0.9
2,973,794	-		HER17_RS13420	0.12	+0.4
2,973,831	+		HER17_RS13420	0.14	+0.2
2,973,907	-		HER17_RS13420	0.18	+0.0
2,973,932	-		HER17_RS13420	0.19	-0.4
2,973,992	-		HER17_RS13420	0.22	+1.8
2,974,068	-		HER17_RS13420	0.26	+0.1
2,974,088	+		HER17_RS13420	0.27	+0.0
2,974,088	+		HER17_RS13420	0.27	-1.1
2,974,088	+		HER17_RS13420	0.27	-0.2