Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS12545

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,800,902	+				-0.3
2,800,902	+				+0.9
2,800,903	-				-1.6
2,800,903	-				-0.6
2,800,903	-				-0.2
2,800,905	+				+0.7
2,800,905	+				-0.5
2,800,906	-				-0.2
2,800,922	+				-0.4
2,800,922	+				-0.0
2,800,922	+				+0.6
2,800,925	+				+0.6
2,800,925	+				+0.4
2,800,925	+				-0.7
2,800,925	+				+0.3
2,801,010	+				+0.6
2,801,027	+		HER17_RS12540	0.11	+0.0
2,801,028	-		HER17_RS12540	0.11	-1.2
2,801,140	+		HER17_RS12540	0.26	-0.4
2,801,140	+		HER17_RS12540	0.26	-2.3
2,801,141	-		HER17_RS12540	0.26	+1.1
2,801,171	+		HER17_RS12540	0.30	+0.4
2,801,172	-		HER17_RS12540	0.30	-0.1
2,801,172	-		HER17_RS12540	0.30	-0.5
2,801,206	+		HER17_RS12540	0.34	-0.2
2,801,377	+		HER17_RS12540	0.57	+0.9
2,801,378	-		HER17_RS12540	0.57	-0.3
2,801,445	+		HER17_RS12540	0.65	-0.2
2,801,454	+		HER17_RS12540	0.67	+0.3
2,801,454	+		HER17_RS12540	0.67	+0.3
2,801,455	-		HER17_RS12540	0.67	+0.3
2,801,499	+		HER17_RS12540	0.72	-0.3
2,801,499	+		HER17_RS12540	0.72	+1.7
2,801,499	+		HER17_RS12540	0.72	-0.7
2,801,500	-		HER17_RS12540	0.72	+0.0
2,801,553	+		HER17_RS12540	0.79	+1.5
2,801,554	-		HER17_RS12540	0.79	+0.3
2,801,554	-		HER17_RS12540	0.79	+0.0
2,801,556	+		HER17_RS12540	0.80	-1.1
2,801,557	-		HER17_RS12540	0.80	+0.5
2,801,557	-		HER17_RS12540	0.80	+0.1
2,801,659	+				+0.4
2,801,663	+				-0.0
2,801,664	-				+0.2
2,801,710	+				-0.6
2,801,711	-				+0.5
2,801,711	-				+0.2
2,801,831	+				-0.6
2,801,850	+				-0.3
2,801,898	+				+0.8
2,801,899	-				-0.5
2,801,940	+				+0.3
2,801,940	+				+0.6
2,802,058	-		HER17_RS12545	0.17	-0.6
2,802,168	+		HER17_RS12545	0.26	-0.2
2,802,345	+		HER17_RS12545	0.40	-1.2
2,802,378	+		HER17_RS12545	0.43	+0.3
2,802,380	+		HER17_RS12545	0.43	+0.5
2,802,382	-		HER17_RS12545	0.44	+0.5
2,802,420	+		HER17_RS12545	0.47	-0.2
2,802,421	-		HER17_RS12545	0.47	-0.1
2,802,456	-		HER17_RS12545	0.50	+0.5
2,802,490	+		HER17_RS12545	0.52	+0.9
2,802,549	+		HER17_RS12545	0.57	+0.1
2,802,573	+		HER17_RS12545	0.59	-0.2
2,802,587	+		HER17_RS12545	0.61	+0.1
2,802,587	+		HER17_RS12545	0.61	-0.5
2,802,588	-		HER17_RS12545	0.61	-0.3
2,802,588	-		HER17_RS12545	0.61	+0.2
2,802,588	-		HER17_RS12545	0.61	-2.7
2,802,648	+		HER17_RS12545	0.66	-0.9
2,802,684	+		HER17_RS12545	0.69	-0.3
2,802,839	+		HER17_RS12545	0.81	+1.1
2,802,839	+		HER17_RS12545	0.81	+1.1
2,802,840	-		HER17_RS12545	0.82	-0.3
2,802,909	+		HER17_RS12545	0.87	-0.1
2,802,933	+		HER17_RS12545	0.89	+0.1
2,802,933	+		HER17_RS12545	0.89	+0.2
2,802,934	-		HER17_RS12545	0.89	-0.1
2,802,935	+		HER17_RS12545	0.89	+1.3
2,802,935	+		HER17_RS12545	0.89	-1.2
2,802,935	+		HER17_RS12545	0.89	+0.3
2,802,936	-		HER17_RS12545	0.89	-0.0
2,802,936	-		HER17_RS12545	0.89	+1.1
2,803,014	+				-0.5
2,803,014	+				+0.7
2,803,019	-				+0.6
2,803,019	-				+0.1
2,803,019	-				+0.9
2,803,134	+				-0.7
2,803,134	+				+0.2
2,803,134	+				+0.1
2,803,134	+				+0.1
2,803,135	-				-0.0
2,803,135	-				+1.3
2,803,135	-				+0.1
2,803,135	-				+0.6
2,803,346	-				-0.2
2,803,346	-				+0.3
2,803,469	-		HER17_RS12550	0.18	+0.1
2,803,616	+		HER17_RS12550	0.40	-0.7
2,803,616	+		HER17_RS12550	0.40	-0.7
2,803,617	-		HER17_RS12550	0.40	-0.6
2,803,702	+		HER17_RS12550	0.53	-0.7
2,803,702	+		HER17_RS12550	0.53	+0.3
2,803,757	+		HER17_RS12550	0.62	+0.2
2,803,817	+		HER17_RS12550	0.71	-0.2
2,803,829	+		HER17_RS12550	0.73	+1.1
2,803,829	+		HER17_RS12550	0.73	-0.5
2,803,829	+		HER17_RS12550	0.73	+0.1
2,803,830	-		HER17_RS12550	0.73	+0.0
2,803,830	-		HER17_RS12550	0.73	+0.5
2,803,855	+		HER17_RS12550	0.77	-0.3
2,803,938	+		HER17_RS12550	0.89	+0.5
2,803,938	+		HER17_RS12550	0.89	+0.2
2,803,939	-		HER17_RS12550	0.89	+0.4
2,803,998	+				+0.7
2,803,999	-				-0.1