Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS12235

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,727,710	-		HER17_RS12230	0.28	-1.2
2,727,753	+		HER17_RS12230	0.31	-0.6
2,727,754	-		HER17_RS12230	0.31	-0.2
2,727,755	+		HER17_RS12230	0.31	-0.3
2,727,756	-		HER17_RS12230	0.31	-0.7
2,727,839	-		HER17_RS12230	0.37	-0.4
2,728,003	-		HER17_RS12230	0.50	-0.1
2,728,029	-		HER17_RS12230	0.52	-1.3
2,728,058	+		HER17_RS12230	0.54	+0.2
2,728,059	-		HER17_RS12230	0.54	-0.1
2,728,082	-		HER17_RS12230	0.56	+0.3
2,728,082	-		HER17_RS12230	0.56	-0.1
2,728,332	+		HER17_RS12230	0.74	-0.1
2,728,479	+		HER17_RS12230	0.86	-0.6
2,728,479	+		HER17_RS12230	0.86	+0.6
2,728,479	+		HER17_RS12230	0.86	-1.1
2,728,479	+		HER17_RS12230	0.86	-2.9
2,728,479	+		HER17_RS12230	0.86	-0.5
2,728,480	-		HER17_RS12230	0.86	+0.8
2,728,480	-		HER17_RS12230	0.86	+0.5
2,728,480	-		HER17_RS12230	0.86	-0.1
2,728,480	-		HER17_RS12230	0.86	-1.3
2,728,485	+		HER17_RS12230	0.86	-0.6
2,728,487	+		HER17_RS12230	0.86	-1.4
2,728,487	+		HER17_RS12230	0.86	+0.5
2,728,487	+		HER17_RS12230	0.86	-0.6
2,728,487	+		HER17_RS12230	0.86	-0.6
2,728,497	+		HER17_RS12230	0.87	-0.1
2,728,497	+		HER17_RS12230	0.87	+0.8
2,728,498	-		HER17_RS12230	0.87	-0.9
2,728,498	-		HER17_RS12230	0.87	-0.9
2,728,540	+				-1.1
2,728,586	-				+0.6
2,728,997	+		HER17_RS12235	0.31	-0.6
2,728,997	+		HER17_RS12235	0.31	-0.5
2,728,997	+		HER17_RS12235	0.31	+0.7
2,728,997	+		HER17_RS12235	0.31	+0.5
2,728,997	+		HER17_RS12235	0.31	-0.8
2,729,101	+		HER17_RS12235	0.40	+1.4
2,729,111	+		HER17_RS12235	0.41	+0.3
2,729,112	-		HER17_RS12235	0.41	-0.3
2,729,112	-		HER17_RS12235	0.41	+0.5
2,729,115	+		HER17_RS12235	0.42	-0.1
2,729,115	+		HER17_RS12235	0.42	-1.2
2,729,115	+		HER17_RS12235	0.42	+0.5
2,729,115	+		HER17_RS12235	0.42	-1.3
2,729,115	+		HER17_RS12235	0.42	-1.3
2,729,115	+		HER17_RS12235	0.42	+0.4
2,729,116	-		HER17_RS12235	0.42	+0.3
2,729,116	-		HER17_RS12235	0.42	+0.3
2,729,116	-		HER17_RS12235	0.42	+0.3
2,729,116	-		HER17_RS12235	0.42	-1.8
2,729,116	-		HER17_RS12235	0.42	-0.2
2,729,116	-		HER17_RS12235	0.42	-0.5
2,729,172	+		HER17_RS12235	0.47	-1.8
2,729,172	+		HER17_RS12235	0.47	+0.7
2,729,173	-		HER17_RS12235	0.47	-1.0
2,729,219	+		HER17_RS12235	0.51	+0.0
2,729,219	+		HER17_RS12235	0.51	-1.7
2,729,220	-		HER17_RS12235	0.51	-0.2
2,729,220	-		HER17_RS12235	0.51	-0.9
2,729,290	+		HER17_RS12235	0.58	-0.1
2,729,290	+		HER17_RS12235	0.58	-0.6
2,729,477	-		HER17_RS12235	0.75	-0.1
2,729,477	-		HER17_RS12235	0.75	+0.3
2,729,551	+		HER17_RS12235	0.82	-0.7
2,729,551	+		HER17_RS12235	0.82	-0.1
2,729,552	-		HER17_RS12235	0.82	+0.8
2,729,556	-		HER17_RS12235	0.83	+0.5
2,729,635	+				-0.7
2,729,636	-				+0.8
2,729,669	-				+1.1
2,729,669	-				+0.0
2,729,669	-				+0.4
2,729,712	+				+0.5
2,729,713	-				+0.7
2,729,739	-				+0.2
2,729,744	+				+0.1
2,729,744	+				-0.1
2,729,899	+		HER17_RS12240	0.13	+0.0
2,730,029	-		HER17_RS12240	0.26	-1.6
2,730,095	+		HER17_RS12240	0.32	+0.3
2,730,096	-		HER17_RS12240	0.32	-0.8
2,730,127	+		HER17_RS12240	0.35	-0.1
2,730,127	+		HER17_RS12240	0.35	-1.5
2,730,128	-		HER17_RS12240	0.35	+0.2
2,730,131	+		HER17_RS12240	0.35	+1.4
2,730,131	+		HER17_RS12240	0.35	-1.8
2,730,132	-		HER17_RS12240	0.35	+0.3
2,730,132	-		HER17_RS12240	0.35	+0.0
2,730,197	+		HER17_RS12240	0.41	-1.4
2,730,230	-		HER17_RS12240	0.44	-0.3
2,730,300	+		HER17_RS12240	0.51	-0.5
2,730,300	+		HER17_RS12240	0.51	+1.1
2,730,300	+		HER17_RS12240	0.51	+0.2
2,730,301	-		HER17_RS12240	0.51	-1.2
2,730,301	-		HER17_RS12240	0.51	-0.2
2,730,427	-		HER17_RS12240	0.63	-0.1
2,730,427	-		HER17_RS12240	0.63	+0.2
2,730,427	-		HER17_RS12240	0.63	-0.7
2,730,427	-		HER17_RS12240	0.63	+0.6
2,730,428	+		HER17_RS12240	0.63	-0.2
2,730,428	+		HER17_RS12240	0.63	+0.8
2,730,429	-		HER17_RS12240	0.63	+0.1
2,730,429	-		HER17_RS12240	0.63	-0.5
2,730,451	-		HER17_RS12240	0.65	-0.7
2,730,457	+		HER17_RS12240	0.66	-0.3
2,730,488	-		HER17_RS12240	0.69	-0.5
2,730,674	+		HER17_RS12240	0.86	+0.3
2,730,688	+		HER17_RS12240	0.87	-0.7
2,730,706	+		HER17_RS12240	0.89	+1.3
2,730,706	+		HER17_RS12240	0.89	-0.1