Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11225

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,502,078	+		HER17_RS11220	0.52	+0.0
2,502,079	-		HER17_RS11220	0.52	+0.8
2,502,116	+		HER17_RS11220	0.54	+0.2
2,502,166	-		HER17_RS11220	0.57	+0.4
2,502,172	-		HER17_RS11220	0.58	-0.2
2,502,254	-		HER17_RS11220	0.63	-1.1
2,502,405	-		HER17_RS11220	0.73	-0.6
2,502,405	-		HER17_RS11220	0.73	+0.5
2,502,446	+		HER17_RS11220	0.75	+0.3
2,502,447	-		HER17_RS11220	0.75	+0.7
2,502,503	+		HER17_RS11220	0.79	+0.1
2,502,504	-		HER17_RS11220	0.79	-0.3
2,502,643	-		HER17_RS11220	0.88	-0.2
2,502,667	+		HER17_RS11220	0.89	+0.1
2,502,680	+		HER17_RS11220	0.90	-2.1
2,502,681	-				+1.0
2,502,710	+				-0.1
2,502,710	+				-0.5
2,502,711	-				+0.2
2,502,711	-				+0.0
2,502,836	+				-0.3
2,502,837	-				-2.8
2,502,850	+				-0.7
2,502,850	+				+0.7
2,502,850	+				+0.6
2,502,852	+				+0.1
2,502,855	+				-0.4
2,502,855	+				-0.8
2,502,856	-				-0.0
2,502,933	+				-2.8
2,502,938	-				-0.3
2,502,943	+				-0.1
2,502,949	+				+0.6
2,502,993	+				+1.0
2,503,006	+				+0.2
2,503,016	+				-0.6
2,503,017	-				+0.3
2,503,026	+				+0.5
2,503,026	+				-0.3
2,503,032	+				+0.9
2,503,142	+		HER17_RS11225	0.21	+1.1
2,503,143	-		HER17_RS11225	0.21	+1.0
2,503,143	-		HER17_RS11225	0.21	-0.0
2,503,143	-		HER17_RS11225	0.21	+0.0
2,503,164	+		HER17_RS11225	0.25	+0.1
2,503,164	+		HER17_RS11225	0.25	+0.2
2,503,164	+		HER17_RS11225	0.25	+0.2
2,503,165	-		HER17_RS11225	0.25	+1.4
2,503,206	+		HER17_RS11225	0.33	+0.4
2,503,206	+		HER17_RS11225	0.33	+0.8
2,503,206	+		HER17_RS11225	0.33	+0.1
2,503,265	+		HER17_RS11225	0.44	+1.6
2,503,266	-		HER17_RS11225	0.44	+1.1
2,503,266	-		HER17_RS11225	0.44	+0.4
2,503,267	+		HER17_RS11225	0.44	+0.0
2,503,267	+		HER17_RS11225	0.44	+0.1
2,503,267	+		HER17_RS11225	0.44	-0.2
2,503,267	+		HER17_RS11225	0.44	+0.7
2,503,267	+		HER17_RS11225	0.44	+0.7
2,503,267	+		HER17_RS11225	0.44	+0.6
2,503,267	+		HER17_RS11225	0.44	+0.5
2,503,267	+		HER17_RS11225	0.44	+0.5
2,503,267	+		HER17_RS11225	0.44	+1.4
2,503,267	+		HER17_RS11225	0.44	+0.5
2,503,268	-		HER17_RS11225	0.44	+1.0
2,503,268	-		HER17_RS11225	0.44	+0.4
2,503,268	-		HER17_RS11225	0.44	+0.3
2,503,268	-		HER17_RS11225	0.44	+0.3
2,503,268	-		HER17_RS11225	0.44	+1.3
2,503,268	-		HER17_RS11225	0.44	-0.7
2,503,268	-		HER17_RS11225	0.44	+0.4
2,503,276	+		HER17_RS11225	0.46	+1.4
2,503,276	+		HER17_RS11225	0.46	+0.6
2,503,277	-		HER17_RS11225	0.46	+0.9
2,503,312	-		HER17_RS11225	0.53	+0.4
2,503,489	+		HER17_RS11225	0.86	+0.7
2,503,490	-		HER17_RS11225	0.86	+1.4
2,503,565	+				+0.6
2,503,566	-				-0.5
2,503,603	-				-2.3
2,503,628	-				-1.0
2,503,654	+				+0.1
2,503,655	-				+0.7
2,503,655	-				-0.9
2,503,655	-				-0.5
2,503,659	-		HER17_RS11230	0.11	-0.3
2,503,792	+		HER17_RS11230	0.78	-1.3
2,503,874	+				-0.9
2,504,000	-				+2.4
2,504,016	-				+1.6
2,504,065	-				+0.9
2,504,070	+				-0.6
2,504,073	-				-0.7
2,504,108	+				+1.4
2,504,116	-				-0.8
2,504,116	-				+0.5
2,504,116	-				-0.7
2,504,226	+		HER17_RS11235	0.76	+0.0
2,504,226	+		HER17_RS11235	0.76	-0.3
2,504,226	+		HER17_RS11235	0.76	+0.0
2,504,319	-				+0.9
2,504,438	-		HER17_RS11240	0.16	+0.4
2,504,477	-		HER17_RS11240	0.25	-0.7