Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11215

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,499,543	-		HER17_RS11210	0.57	-0.0
2,499,563	+		HER17_RS11210	0.58	-0.4
2,499,564	-		HER17_RS11210	0.58	-0.3
2,499,564	-		HER17_RS11210	0.58	+0.9
2,499,629	+		HER17_RS11210	0.62	-0.5
2,499,646	+		HER17_RS11210	0.63	-1.4
2,499,647	-		HER17_RS11210	0.63	-0.5
2,499,653	+		HER17_RS11210	0.64	+0.4
2,499,656	+		HER17_RS11210	0.64	-0.4
2,499,657	-		HER17_RS11210	0.64	-0.0
2,499,657	-		HER17_RS11210	0.64	+0.2
2,499,712	+		HER17_RS11210	0.68	-0.4
2,499,712	+		HER17_RS11210	0.68	-0.5
2,499,713	-		HER17_RS11210	0.68	+0.2
2,499,713	-		HER17_RS11210	0.68	-0.5
2,499,713	-		HER17_RS11210	0.68	-0.1
2,499,713	-		HER17_RS11210	0.68	-0.5
2,499,713	-		HER17_RS11210	0.68	-1.3
2,499,871	+		HER17_RS11210	0.78	-0.0
2,499,871	+		HER17_RS11210	0.78	+0.3
2,499,871	+		HER17_RS11210	0.78	-0.4
2,499,895	+		HER17_RS11210	0.80	-0.1
2,499,896	-		HER17_RS11210	0.80	+0.6
2,499,896	-		HER17_RS11210	0.80	-0.0
2,499,900	-		HER17_RS11210	0.80	-1.3
2,499,968	+		HER17_RS11210	0.84	-0.7
2,499,969	-		HER17_RS11210	0.84	-0.1
2,499,969	-		HER17_RS11210	0.84	-1.3
2,500,046	+		HER17_RS11210	0.89	+1.2
2,500,047	-		HER17_RS11210	0.89	+0.1
2,500,081	+				+0.4
2,500,130	+				-0.1
2,500,130	+				-0.5
2,500,209	-				+0.3
2,500,310	-				+0.5
2,500,318	-				+0.9
2,500,353	-				+1.7
2,500,353	-				+0.4
2,500,353	-				-1.6
2,500,354	-				+0.4
2,500,415	-		HER17_RS11215	0.15	+0.4
2,500,495	+		HER17_RS11215	0.26	+1.2
2,500,512	-		HER17_RS11215	0.28	+0.4
2,500,512	-		HER17_RS11215	0.28	+0.5
2,500,513	+		HER17_RS11215	0.28	+0.4
2,500,513	+		HER17_RS11215	0.28	+0.8
2,500,513	+		HER17_RS11215	0.28	+0.3
2,500,514	-		HER17_RS11215	0.29	-0.5
2,500,514	-		HER17_RS11215	0.29	-1.9
2,500,514	-		HER17_RS11215	0.29	+0.4
2,500,514	-		HER17_RS11215	0.29	-0.2
2,500,515	+		HER17_RS11215	0.29	+0.4
2,500,516	-		HER17_RS11215	0.29	+1.2
2,500,516	-		HER17_RS11215	0.29	+0.6
2,500,547	-		HER17_RS11215	0.33	-0.3
2,500,644	+		HER17_RS11215	0.47	-0.3
2,500,647	+		HER17_RS11215	0.47	-0.6
2,500,647	+		HER17_RS11215	0.47	-1.1
2,500,647	+		HER17_RS11215	0.47	-0.9
2,500,648	-		HER17_RS11215	0.47	+0.2
2,500,875	+		HER17_RS11215	0.79	-2.9
2,500,876	-		HER17_RS11215	0.79	-1.1
2,500,890	-		HER17_RS11215	0.81	-0.4
2,500,892	+		HER17_RS11215	0.81	-0.6
2,500,892	+		HER17_RS11215	0.81	-1.3
2,500,893	-		HER17_RS11215	0.81	+0.2
2,500,893	-		HER17_RS11215	0.81	+0.1
2,500,893	-		HER17_RS11215	0.81	-0.3
2,500,968	+				-0.3
2,500,969	-				-0.2
2,500,970	+				-0.1
2,500,971	-				-0.5
2,500,971	-				+0.4
2,500,971	-				+0.5
2,500,985	-				+0.2
2,500,985	-				+0.1
2,500,985	-				-0.4
2,500,985	-				+1.4
2,501,019	+				-0.4
2,501,020	-				-0.1
2,501,020	-				+0.6
2,501,073	+				+0.3
2,501,073	+				-1.6
2,501,074	-				+0.6
2,501,097	+				-0.6
2,501,098	-				+0.6
2,501,099	+				-1.4
2,501,212	+				-1.2
2,501,213	-				+1.3
2,501,227	+				+0.1
2,501,228	-				+0.4
2,501,228	-				+0.0
2,501,232	+				-0.9
2,501,354	-				+0.7
2,501,370	-				+0.2
2,501,370	-				-0.1
2,501,428	-		HER17_RS11220	0.11	+0.0
2,501,539	+		HER17_RS11220	0.18	+0.1
2,501,582	+		HER17_RS11220	0.20	-0.4
2,501,582	+		HER17_RS11220	0.20	+0.3
2,501,726	-		HER17_RS11220	0.30	-0.5
2,501,726	-		HER17_RS11220	0.30	-0.8
2,501,756	+		HER17_RS11220	0.31	+1.2
2,501,756	+		HER17_RS11220	0.31	+0.2
2,501,756	+		HER17_RS11220	0.31	-0.3
2,501,757	-		HER17_RS11220	0.32	+0.4
2,501,757	-		HER17_RS11220	0.32	-0.4
2,501,817	+		HER17_RS11220	0.35	+0.1
2,501,818	-		HER17_RS11220	0.35	+0.0
2,501,839	+		HER17_RS11220	0.37	-0.5
2,501,840	-		HER17_RS11220	0.37	-0.7
2,501,992	+		HER17_RS11220	0.46	+0.1
2,501,992	+		HER17_RS11220	0.46	-0.5
2,501,993	-		HER17_RS11220	0.46	-0.2
2,501,993	-		HER17_RS11220	0.46	+1.0
2,502,020	-		HER17_RS11220	0.48	+0.2