Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11165

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,489,604	+		HER17_RS11155	0.82	+0.5
2,489,674	+		HER17_RS11155	0.87	-0.4
2,489,674	+		HER17_RS11155	0.87	-2.7
2,489,676	+		HER17_RS11155	0.87	-1.5
2,489,676	+		HER17_RS11155	0.87	-0.8
2,489,676	+		HER17_RS11155	0.87	+0.3
2,489,676	+		HER17_RS11155	0.87	+0.2
2,489,676	+		HER17_RS11155	0.87	-0.8
2,489,677	-		HER17_RS11155	0.87	-0.1
2,489,677	-		HER17_RS11155	0.87	-0.3
2,489,677	-		HER17_RS11155	0.87	-0.1
2,489,677	-		HER17_RS11155	0.87	+0.5
2,489,677	-		HER17_RS11155	0.87	-1.0
2,489,677	-		HER17_RS11155	0.87	-0.4
2,489,680	+		HER17_RS11155	0.88	+0.2
2,489,680	+		HER17_RS11155	0.88	-0.5
2,489,680	+		HER17_RS11155	0.88	-0.1
2,489,681	-		HER17_RS11155	0.88	-0.1
2,489,681	-		HER17_RS11155	0.88	-0.2
2,489,681	-		HER17_RS11155	0.88	-0.4
2,489,681	-		HER17_RS11155	0.88	-0.3
2,489,743	-				+0.0
2,489,787	+				+0.2
2,489,788	-				+0.3
2,489,788	-				+0.6
2,489,791	+				+0.3
2,489,829	-				+1.0
2,489,829	-				-1.2
2,489,836	+				-0.8
2,489,837	-				-0.2
2,489,837	-				-0.5
2,489,860	-				+0.4
2,489,860	-				+0.3
2,489,873	+				-0.2
2,489,874	-				-0.1
2,489,876	+				+0.6
2,489,877	-				-0.3
2,489,880	+				-0.9
2,489,880	+				-0.3
2,489,881	-				-0.4
2,489,881	-				+1.6
2,489,881	-				+0.4
2,489,881	-				-0.1
2,489,949	-				+0.2
2,489,954	+				-0.3
2,489,954	+				-0.8
2,489,954	+				-0.5
2,489,955	-				+0.1
2,489,956	+				-1.2
2,489,956	+				-0.8
2,489,956	+				+1.0
2,489,956	+				+1.2
2,489,956	+				-1.2
2,489,957	-				+0.9
2,489,957	-				-0.7
2,490,183	-		HER17_RS11160	0.50	+0.8
2,490,312	+		HER17_RS11160	0.82	-0.5
2,490,332	-		HER17_RS11160	0.86	+1.4
2,490,395	-				+1.3
2,490,409	-				-0.6
2,490,546	-				+0.7
2,490,561	+				-0.8
2,490,648	+				+0.6
2,490,648	+				+0.2
2,490,648	+				-0.3
2,490,648	+				+0.4
2,490,649	-				-1.2
2,490,649	-				-0.0
2,490,649	-				-0.3
2,490,649	-				+0.0
2,490,659	+				+0.4
2,490,725	+		HER17_RS11165	0.12	-0.4
2,490,742	+		HER17_RS11165	0.13	+0.3
2,490,774	-		HER17_RS11165	0.16	+0.0
2,490,777	+		HER17_RS11165	0.16	-0.0
2,490,777	+		HER17_RS11165	0.16	-0.1
2,490,777	+		HER17_RS11165	0.16	-0.1
2,490,777	+		HER17_RS11165	0.16	-0.2
2,490,799	+		HER17_RS11165	0.18	-0.5
2,490,812	+		HER17_RS11165	0.19	+0.4
2,490,812	+		HER17_RS11165	0.19	+1.3
2,490,812	+		HER17_RS11165	0.19	-0.4
2,490,813	-		HER17_RS11165	0.19	+0.7
2,490,813	-		HER17_RS11165	0.19	-0.6
2,490,816	+		HER17_RS11165	0.19	+0.0
2,490,817	-		HER17_RS11165	0.19	+0.9
2,490,844	+		HER17_RS11165	0.22	-0.2
2,490,845	-		HER17_RS11165	0.22	-1.0
2,490,845	-		HER17_RS11165	0.22	-0.5
2,490,848	+		HER17_RS11165	0.22	+0.1
2,490,849	-		HER17_RS11165	0.22	-0.6
2,490,905	+		HER17_RS11165	0.27	+0.0
2,490,969	+		HER17_RS11165	0.32	+0.2
2,491,019	-		HER17_RS11165	0.36	-0.2
2,491,151	-		HER17_RS11165	0.47	+0.4
2,491,251	+		HER17_RS11165	0.56	-0.5
2,491,252	-		HER17_RS11165	0.56	-0.4
2,491,252	-		HER17_RS11165	0.56	-0.4
2,491,252	-		HER17_RS11165	0.56	-0.1
2,491,252	-		HER17_RS11165	0.56	-0.4
2,491,497	+		HER17_RS11165	0.76	-0.8
2,491,497	+		HER17_RS11165	0.76	-0.4
2,491,497	+		HER17_RS11165	0.76	+0.1
2,491,497	+		HER17_RS11165	0.76	+0.1
2,491,497	+		HER17_RS11165	0.76	+0.5
2,491,498	-		HER17_RS11165	0.76	-0.8
2,491,498	-		HER17_RS11165	0.76	-2.5
2,491,498	-		HER17_RS11165	0.76	+0.3
2,491,560	+		HER17_RS11165	0.81	+0.1
2,491,561	-		HER17_RS11165	0.81	+0.1
2,491,575	+		HER17_RS11165	0.82	+0.4
2,491,576	-		HER17_RS11165	0.83	-1.8
2,491,763	+				-0.2
2,491,763	+				-0.6
2,491,764	-				+0.6
2,491,782	+				+1.0
2,491,782	+				-0.4
2,491,783	-				+0.1
2,491,783	-				-1.4
2,491,793	+				+0.9
2,491,797	+				-0.2
2,491,808	+				-0.1
2,491,817	+				-0.2
2,491,817	+				+1.0
2,491,818	-				+0.9
2,491,818	-				-1.2
2,491,915	+				+1.4
2,491,916	-				-0.4
2,492,046	-		HER17_RS11170	0.19	+1.0
2,492,046	-		HER17_RS11170	0.19	+0.2
2,492,169	+		HER17_RS11170	0.29	+1.2
2,492,171	+		HER17_RS11170	0.29	-1.3
2,492,172	-		HER17_RS11170	0.29	+2.4
2,492,191	-		HER17_RS11170	0.31	+0.9
2,492,191	-		HER17_RS11170	0.31	-0.1
2,492,315	+		HER17_RS11170	0.41	+0.1
2,492,315	+		HER17_RS11170	0.41	+0.6
2,492,315	+		HER17_RS11170	0.41	-1.3
2,492,315	+		HER17_RS11170	0.41	+0.4
2,492,316	-		HER17_RS11170	0.41	-0.4
2,492,316	-		HER17_RS11170	0.41	+1.3
2,492,316	-		HER17_RS11170	0.41	+0.3
2,492,407	-		HER17_RS11170	0.48	+0.1
2,492,492	-		HER17_RS11170	0.55	+1.0
2,492,545	+		HER17_RS11170	0.59	+1.9
2,492,601	+		HER17_RS11170	0.63	-1.0
2,492,757	+		HER17_RS11170	0.76	-0.6
2,492,758	-		HER17_RS11170	0.76	-0.8
2,492,758	-		HER17_RS11170	0.76	-0.2
2,492,759	+		HER17_RS11170	0.76	+0.0