Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09335

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,047,225	+		HER17_RS09330	0.15	-0.6
2,047,225	+		HER17_RS09330	0.15	-0.8
2,047,226	-		HER17_RS09330	0.15	-1.3
2,047,238	+		HER17_RS09330	0.17	-0.8
2,047,239	-		HER17_RS09330	0.17	-0.1
2,047,286	+		HER17_RS09330	0.23	-0.6
2,047,286	+		HER17_RS09330	0.23	-0.7
2,047,422	+		HER17_RS09330	0.41	-0.1
2,047,423	-		HER17_RS09330	0.41	-0.3
2,047,423	-		HER17_RS09330	0.41	-0.5
2,047,423	-		HER17_RS09330	0.41	-0.4
2,047,464	+		HER17_RS09330	0.46	-1.0
2,047,464	+		HER17_RS09330	0.46	-2.3
2,047,464	+		HER17_RS09330	0.46	-0.4
2,047,464	+		HER17_RS09330	0.46	-2.3
2,047,465	-		HER17_RS09330	0.46	-1.0
2,047,465	-		HER17_RS09330	0.46	-0.2
2,047,465	-		HER17_RS09330	0.46	-2.2
2,047,658	+		HER17_RS09330	0.71	-0.2
2,047,658	+		HER17_RS09330	0.71	-0.1
2,047,659	-		HER17_RS09330	0.71	-1.6
2,047,659	-		HER17_RS09330	0.71	+0.0
2,047,714	+		HER17_RS09330	0.78	-1.2
2,047,757	-		HER17_RS09330	0.84	-1.1
2,047,760	+		HER17_RS09330	0.84	+0.6
2,047,760	+		HER17_RS09330	0.84	-0.8
2,047,761	-		HER17_RS09330	0.84	-1.0
2,047,827	+				-1.5
2,047,893	+				-2.0
2,047,893	+				-1.5
2,047,893	+				-1.7
2,047,894	-				+0.8
2,047,907	+				-0.8
2,047,907	+				-0.2
2,047,907	+				-0.6
2,047,914	+				+0.1
2,047,915	-				-0.3
2,047,921	+				-1.2
2,047,925	+				+0.6
2,047,925	+				+0.0
2,047,925	+				+0.2
2,047,925	+				-0.3
2,047,926	-				+0.2
2,047,942	+				+0.0
2,047,942	+				+0.2
2,047,942	+				+1.5
2,047,943	-				+0.5
2,047,943	-				+0.1
2,048,206	+				+0.2
2,048,220	+				-0.9
2,048,303	+				+0.6
2,048,304	-				+0.5
2,048,306	+		HER17_RS09335	0.10	+0.8
2,048,600	+		HER17_RS09335	0.41	-1.1
2,048,605	-		HER17_RS09335	0.42	+0.3
2,048,605	-		HER17_RS09335	0.42	+0.2
2,048,644	+		HER17_RS09335	0.46	-0.1
2,048,644	+		HER17_RS09335	0.46	+0.6
2,048,664	+		HER17_RS09335	0.48	+0.8
2,048,664	+		HER17_RS09335	0.48	-1.1
2,048,665	-		HER17_RS09335	0.48	+1.5
2,048,665	-		HER17_RS09335	0.48	-0.5
2,048,742	+		HER17_RS09335	0.56	-0.0
2,048,743	-		HER17_RS09335	0.56	-0.7
2,048,743	-		HER17_RS09335	0.56	-0.3
2,048,743	-		HER17_RS09335	0.56	+0.5
2,048,744	+		HER17_RS09335	0.57	-0.8
2,048,744	+		HER17_RS09335	0.57	+0.3
2,048,744	+		HER17_RS09335	0.57	+0.3
2,048,744	+		HER17_RS09335	0.57	+0.1
2,048,744	+		HER17_RS09335	0.57	+0.7
2,048,744	+		HER17_RS09335	0.57	-0.5
2,048,744	+		HER17_RS09335	0.57	+0.3
2,048,745	-		HER17_RS09335	0.57	-0.3
2,048,969	+		HER17_RS09335	0.80	+0.4
2,048,978	+		HER17_RS09335	0.81	-0.3
2,049,042	+		HER17_RS09335	0.88	+0.3
2,049,042	+		HER17_RS09335	0.88	-0.5
2,049,045	+		HER17_RS09335	0.89	+0.9
2,049,046	-		HER17_RS09335	0.89	+1.2
2,049,114	-				+0.6
2,049,150	+				-0.1
2,049,150	+				+0.3
2,049,151	-				+0.3
2,049,155	-				+0.4
2,049,170	+				-0.0
2,049,171	-				+0.4
2,049,171	-				-2.0
2,049,184	+				+1.0
2,049,262	+		HER17_RS09340	0.10	-0.1
2,049,331	+		HER17_RS09340	0.21	-0.5
2,049,331	+		HER17_RS09340	0.21	+0.5
2,049,331	+		HER17_RS09340	0.21	-0.2
2,049,331	+		HER17_RS09340	0.21	-0.0
2,049,331	+		HER17_RS09340	0.21	-0.7
2,049,332	-		HER17_RS09340	0.21	-0.4
2,049,568	-		HER17_RS09340	0.59	+0.4
2,049,613	+		HER17_RS09340	0.66	-0.5
2,049,613	+		HER17_RS09340	0.66	+0.2
2,049,614	-		HER17_RS09340	0.66	+0.1
2,049,673	+		HER17_RS09340	0.75	+0.0
2,049,673	+		HER17_RS09340	0.75	+0.3
2,049,674	-		HER17_RS09340	0.75	-0.3
2,049,793	-				+0.7
2,049,946	+				-0.1
2,049,946	+				+0.3
2,049,947	-				-0.4
2,049,947	-				-0.1
2,050,080	+		HER17_RS09345	0.16	-0.4
2,050,080	+		HER17_RS09345	0.16	+0.2
2,050,080	+		HER17_RS09345	0.16	-0.3
2,050,080	+		HER17_RS09345	0.16	+0.3
2,050,080	+		HER17_RS09345	0.16	-2.2
2,050,080	+		HER17_RS09345	0.16	+0.8
2,050,080	+		HER17_RS09345	0.16	-0.1
2,050,080	+		HER17_RS09345	0.16	-0.1
2,050,080	+		HER17_RS09345	0.16	-0.2
2,050,080	+		HER17_RS09345	0.16	+0.2
2,050,081	-		HER17_RS09345	0.16	+0.0
2,050,081	-		HER17_RS09345	0.16	+0.4
2,050,081	-		HER17_RS09345	0.16	-0.2
2,050,090	-		HER17_RS09345	0.17	+1.7