Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08620

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,894,837	+		HER17_RS08615	0.11	-0.9
1,894,837	+		HER17_RS08615	0.11	-0.7
1,894,837	+		HER17_RS08615	0.11	+0.4
1,894,881	+		HER17_RS08615	0.15	+0.2
1,894,882	-		HER17_RS08615	0.15	+0.8
1,894,937	-		HER17_RS08615	0.21	-1.4
1,894,998	+		HER17_RS08615	0.27	-0.9
1,894,999	-		HER17_RS08615	0.27	+0.3
1,895,020	+		HER17_RS08615	0.30	+0.3
1,895,020	+		HER17_RS08615	0.30	-1.5
1,895,021	-		HER17_RS08615	0.30	-0.3
1,895,021	-		HER17_RS08615	0.30	-0.2
1,895,021	-		HER17_RS08615	0.30	-1.0
1,895,021	-		HER17_RS08615	0.30	-0.1
1,895,024	+		HER17_RS08615	0.30	-0.7
1,895,025	-		HER17_RS08615	0.30	-0.1
1,895,025	-		HER17_RS08615	0.30	+0.3
1,895,036	+		HER17_RS08615	0.31	-0.6
1,895,036	+		HER17_RS08615	0.31	-0.2
1,895,037	-		HER17_RS08615	0.31	+0.0
1,895,125	-		HER17_RS08615	0.41	+0.7
1,895,154	+		HER17_RS08615	0.44	+0.1
1,895,155	-		HER17_RS08615	0.44	-1.1
1,895,173	+		HER17_RS08615	0.46	-0.2
1,895,235	+		HER17_RS08615	0.52	-0.3
1,895,235	+		HER17_RS08615	0.52	-0.1
1,895,236	-		HER17_RS08615	0.52	+0.8
1,895,350	+		HER17_RS08615	0.64	-0.4
1,895,350	+		HER17_RS08615	0.64	+0.0
1,895,351	-		HER17_RS08615	0.64	-1.8
1,895,355	+		HER17_RS08615	0.65	-0.6
1,895,400	+		HER17_RS08615	0.69	+0.5
1,895,456	-		HER17_RS08615	0.75	-1.2
1,895,472	+		HER17_RS08615	0.77	-0.6
1,895,472	+		HER17_RS08615	0.77	-0.0
1,895,472	+		HER17_RS08615	0.77	+0.4
1,895,473	-		HER17_RS08615	0.77	+0.2
1,895,473	-		HER17_RS08615	0.77	-0.1
1,895,622	+				-0.5
1,895,623	-				+1.4
1,895,623	-				-0.2
1,895,623	-				+0.4
1,895,623	-				-3.5
1,895,698	+				-1.1
1,895,698	+				+0.4
1,895,698	+				-1.7
1,895,698	+				-0.3
1,895,698	+				+0.3
1,895,698	+				+0.8
1,895,698	+				+0.3
1,895,699	-				-0.6
1,895,699	-				-0.4
1,895,699	-				+0.4
1,895,699	-				-0.2
1,895,699	-				-1.4
1,895,699	-				-1.4
1,895,699	-				-0.6
1,895,700	+				+0.5
1,895,700	+				-1.6
1,895,700	+				+0.1
1,895,700	+				+0.5
1,895,700	+				-0.6
1,895,700	+				-0.3
1,895,700	+				-0.0
1,895,701	-				-0.4
1,895,701	-				+0.8
1,895,704	+				+0.6
1,895,704	+				-0.3
1,895,704	+				+0.1
1,895,704	+				+0.8
1,895,704	+				+0.2
1,895,704	+				+0.6
1,895,704	+				-0.1
1,895,704	+				-0.2
1,895,705	-				-1.3
1,895,705	-				+0.6
1,895,705	-				-1.2
1,895,705	-				-0.3
1,895,705	-				+0.3
1,895,705	-				-0.6
1,895,705	-				+0.4
1,895,705	-				+0.2
1,895,705	-				+0.0
1,895,705	-				-0.4
1,895,705	-				-1.2
1,895,706	+				-0.6
1,895,707	-				-0.0
1,895,707	-				+0.2
1,895,727	-				-0.4
1,895,771	+				+0.6
1,895,772	-				+0.1
1,895,803	+				-0.2
1,895,804	-				+0.0
1,895,845	-		HER17_RS08620	0.13	+0.4
1,896,025	-		HER17_RS08620	0.44	-1.1
1,896,096	+		HER17_RS08620	0.56	+0.2
1,896,097	-		HER17_RS08620	0.56	-0.3
1,896,102	+		HER17_RS08620	0.57	+0.1
1,896,103	-		HER17_RS08620	0.57	-0.1
1,896,105	+		HER17_RS08620	0.57	+0.2
1,896,105	+		HER17_RS08620	0.57	+0.4
1,896,105	+		HER17_RS08620	0.57	-0.2
1,896,106	-		HER17_RS08620	0.57	-1.0
1,896,106	-		HER17_RS08620	0.57	+0.7
1,896,106	-		HER17_RS08620	0.57	-0.2
1,896,106	-		HER17_RS08620	0.57	+0.4
1,896,122	-		HER17_RS08620	0.60	+0.6
1,896,122	-		HER17_RS08620	0.60	-0.3
1,896,354	+				+1.1
1,896,355	-				-1.6
1,896,366	-				-1.4
1,896,372	+				-1.0
1,896,377	+				-0.6
1,896,378	-				-0.1
1,896,396	-				-0.1
1,896,422	+				+0.3
1,896,464	+				-1.2
1,896,464	+				-0.8
1,896,558	+		HER17_RS08625	0.12	-1.5
1,896,586	+		HER17_RS08625	0.17	-1.4
1,896,810	+		HER17_RS08625	0.60	+0.0
1,896,875	+		HER17_RS08625	0.73	+1.3
1,896,943	+		HER17_RS08625	0.86	-0.2
1,896,943	+		HER17_RS08625	0.86	+0.0
1,897,197	+				-1.8
1,897,215	+				-0.8
1,897,229	+				+0.2
1,897,288	+				-1.8
1,897,322	+				-1.8