Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS07050

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,560,977	+				+0.3
1,560,977	+				-0.2
1,560,977	+				-0.9
1,560,978	-				+0.5
1,560,978	-				-1.9
1,560,978	-				-0.0
1,560,988	+				+0.5
1,560,989	-				-1.2
1,560,989	-				+0.4
1,560,989	-				-0.5
1,560,989	-				+0.2
1,560,989	-				-0.8
1,560,989	-				+0.0
1,560,989	-				-0.4
1,561,006	+				+0.1
1,561,102	+				-0.4
1,561,102	+				-0.2
1,561,124	+		HER17_RS07045	0.13	+0.7
1,561,124	+		HER17_RS07045	0.13	+0.9
1,561,161	-		HER17_RS07045	0.17	-0.6
1,561,165	+		HER17_RS07045	0.18	+0.9
1,561,166	-		HER17_RS07045	0.18	+0.3
1,561,268	-		HER17_RS07045	0.31	-0.1
1,561,315	+		HER17_RS07045	0.37	-0.1
1,561,316	-		HER17_RS07045	0.37	-0.1
1,561,387	+		HER17_RS07045	0.47	+0.3
1,561,388	-		HER17_RS07045	0.47	-0.5
1,561,397	+		HER17_RS07045	0.48	-0.4
1,561,397	+		HER17_RS07045	0.48	+0.9
1,561,397	+		HER17_RS07045	0.48	+0.0
1,561,470	+		HER17_RS07045	0.57	-1.6
1,561,511	+		HER17_RS07045	0.63	-0.1
1,561,512	-		HER17_RS07045	0.63	-2.3
1,561,563	-		HER17_RS07045	0.69	+0.9
1,561,692	-		HER17_RS07045	0.86	+0.5
1,561,712	-		HER17_RS07045	0.89	-0.2
1,561,712	-		HER17_RS07045	0.89	-0.3
1,561,797	+				+1.2
1,561,797	+				+0.7
1,561,797	+				-0.1
1,561,844	-				+0.7
1,561,844	-				-0.2
1,561,863	-				-0.7
1,561,871	-				+0.4
1,561,945	+				+0.2
1,561,994	+				+1.3
1,561,995	-				+0.9
1,562,027	-				-1.6
1,562,027	-				-0.1
1,562,075	+		HER17_RS07050	0.12	+0.4
1,562,150	+		HER17_RS07050	0.20	+0.8
1,562,150	+		HER17_RS07050	0.20	-1.3
1,562,151	-		HER17_RS07050	0.20	+1.5
1,562,151	-		HER17_RS07050	0.20	+0.2
1,562,206	+		HER17_RS07050	0.26	-0.4
1,562,244	+		HER17_RS07050	0.31	-0.5
1,562,245	-		HER17_RS07050	0.31	-0.2
1,562,249	-		HER17_RS07050	0.31	-1.0
1,562,273	-		HER17_RS07050	0.34	+0.4
1,562,273	-		HER17_RS07050	0.34	+0.8
1,562,287	+		HER17_RS07050	0.35	+0.1
1,562,287	+		HER17_RS07050	0.35	+0.0
1,562,287	+		HER17_RS07050	0.35	+0.4
1,562,287	+		HER17_RS07050	0.35	-0.1
1,562,288	-		HER17_RS07050	0.35	-0.7
1,562,288	-		HER17_RS07050	0.35	+0.3
1,562,288	-		HER17_RS07050	0.35	+0.4
1,562,289	+		HER17_RS07050	0.36	-0.6
1,562,289	+		HER17_RS07050	0.36	-0.1
1,562,289	+		HER17_RS07050	0.36	+0.4
1,562,289	+		HER17_RS07050	0.36	+0.1
1,562,289	+		HER17_RS07050	0.36	-2.1
1,562,289	+		HER17_RS07050	0.36	+0.5
1,562,290	-		HER17_RS07050	0.36	+0.7
1,562,290	-		HER17_RS07050	0.36	-0.6
1,562,290	-		HER17_RS07050	0.36	+0.6
1,562,290	-		HER17_RS07050	0.36	-0.4
1,562,290	-		HER17_RS07050	0.36	+0.1
1,562,464	+		HER17_RS07050	0.55	-0.4
1,562,465	-		HER17_RS07050	0.55	+0.9
1,562,465	-		HER17_RS07050	0.55	-0.2
1,562,520	+		HER17_RS07050	0.61	+0.1
1,562,520	+		HER17_RS07050	0.61	-0.0
1,562,521	-		HER17_RS07050	0.61	-0.9
1,562,523	+		HER17_RS07050	0.61	-0.1
1,562,524	-		HER17_RS07050	0.61	-0.8
1,562,546	-		HER17_RS07050	0.64	+0.1
1,562,576	+		HER17_RS07050	0.67	+0.6
1,562,662	+		HER17_RS07050	0.77	-1.5
1,562,663	-		HER17_RS07050	0.77	-0.3
1,562,716	+		HER17_RS07050	0.83	-0.6
1,562,717	-		HER17_RS07050	0.83	+0.5
1,562,717	-		HER17_RS07050	0.83	-1.3
1,562,734	-		HER17_RS07050	0.85	+0.3
1,562,761	+		HER17_RS07050	0.88	-1.9
1,562,858	+				-0.2
1,562,858	+				+0.4
1,562,859	-				-1.2
1,562,859	-				+0.7
1,562,859	-				+1.3
1,562,864	+				+0.4
1,562,864	+				+0.8
1,562,865	-				-0.7
1,562,865	-				+0.7
1,562,865	-				+0.0
1,562,889	+				+0.1
1,562,955	-		HER17_RS07055	0.18	-1.0
1,562,955	-		HER17_RS07055	0.18	-1.7
1,562,960	+		HER17_RS07055	0.19	-0.2
1,562,960	+		HER17_RS07055	0.19	+0.1
1,562,970	+		HER17_RS07055	0.22	-0.4
1,562,970	+		HER17_RS07055	0.22	-0.5
1,562,970	+		HER17_RS07055	0.22	+0.1
1,562,971	-		HER17_RS07055	0.22	+0.9
1,562,971	-		HER17_RS07055	0.22	-1.1
1,562,971	-		HER17_RS07055	0.22	-0.6
1,563,044	-		HER17_RS07055	0.42	+1.0
1,563,084	+		HER17_RS07055	0.53	+0.3
1,563,169	+		HER17_RS07055	0.76	-0.4
1,563,170	-		HER17_RS07055	0.76	+1.0
1,563,175	+		HER17_RS07055	0.77	+1.1
1,563,227	-				-1.2
1,563,247	-				-0.5
1,563,285	-				+0.0
1,563,314	-				-0.2
1,563,328	+				-1.1
1,563,328	+				-0.1
1,563,328	+				-0.3
1,563,329	-				-1.0
1,563,329	-				+0.0
1,563,329	-				-0.3
1,563,337	+				-0.2
1,563,337	+				+0.2
1,563,337	+				-0.3
1,563,338	-				+0.6
1,563,342	+				-1.4
1,563,352	+				+0.4
1,563,386	+				+0.1
1,563,441	+				+0.3
1,563,441	+				+0.8
1,563,441	+				-0.9
1,563,441	+				+0.0
1,563,442	-				-0.2
1,563,443	+				+0.1
1,563,494	+		HER17_RS07060	0.17	+0.2
1,563,495	-		HER17_RS07060	0.18	+0.5
1,563,495	-		HER17_RS07060	0.18	+0.2
1,563,495	-		HER17_RS07060	0.18	+0.6
1,563,536	+		HER17_RS07060	0.24	-0.5
1,563,551	-		HER17_RS07060	0.26	-2.3
1,563,591	-		HER17_RS07060	0.33	-0.2
1,563,650	+		HER17_RS07060	0.42	+0.1
1,563,651	-		HER17_RS07060	0.42	-0.0
1,563,651	-		HER17_RS07060	0.42	-0.2
1,563,718	+		HER17_RS07060	0.53	+1.0
1,563,719	-		HER17_RS07060	0.53	+0.1
1,563,739	+		HER17_RS07060	0.56	+0.2
1,563,739	+		HER17_RS07060	0.56	+0.0
1,563,740	-		HER17_RS07060	0.57	-0.4
1,563,740	-		HER17_RS07060	0.57	-0.5
1,563,754	+		HER17_RS07060	0.59	+0.5
1,563,779	+		HER17_RS07060	0.63	+1.2
1,563,779	+		HER17_RS07060	0.63	+0.6
1,563,780	-		HER17_RS07060	0.63	+0.5
1,563,810	+		HER17_RS07060	0.68	-1.2
1,563,868	-		HER17_RS07060	0.77	-0.1
1,563,868	-		HER17_RS07060	0.77	-0.0