Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06195

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,373,341	+		HER17_RS06190	0.28	-0.4
1,373,342	-		HER17_RS06190	0.28	+0.3
1,373,399	-		HER17_RS06190	0.34	+0.5
1,373,410	+		HER17_RS06190	0.35	+0.1
1,373,410	+		HER17_RS06190	0.35	+0.2
1,373,411	-		HER17_RS06190	0.35	-0.3
1,373,411	-		HER17_RS06190	0.35	-0.4
1,373,411	-		HER17_RS06190	0.35	-0.1
1,373,416	-		HER17_RS06190	0.35	+0.0
1,373,418	+		HER17_RS06190	0.36	-0.5
1,373,419	-		HER17_RS06190	0.36	+1.1
1,373,438	+		HER17_RS06190	0.38	+0.5
1,373,439	-		HER17_RS06190	0.38	-0.5
1,373,470	+		HER17_RS06190	0.41	-0.7
1,373,502	+		HER17_RS06190	0.44	+0.2
1,373,502	+		HER17_RS06190	0.44	-0.6
1,373,502	+		HER17_RS06190	0.44	+0.2
1,373,502	+		HER17_RS06190	0.44	+0.6
1,373,502	+		HER17_RS06190	0.44	+0.3
1,373,502	+		HER17_RS06190	0.44	+0.1
1,373,503	-		HER17_RS06190	0.44	+0.4
1,373,526	+		HER17_RS06190	0.46	+0.6
1,373,526	+		HER17_RS06190	0.46	+0.3
1,373,526	+		HER17_RS06190	0.46	-1.0
1,373,526	+		HER17_RS06190	0.46	-0.5
1,373,527	-		HER17_RS06190	0.46	-0.6
1,373,527	-		HER17_RS06190	0.46	-0.0
1,373,569	-		HER17_RS06190	0.50	-0.1
1,373,625	-		HER17_RS06190	0.56	-0.1
1,373,634	+		HER17_RS06190	0.57	-0.3
1,373,635	-		HER17_RS06190	0.57	-1.4
1,373,635	-		HER17_RS06190	0.57	-0.8
1,373,645	+		HER17_RS06190	0.58	-0.3
1,373,646	-		HER17_RS06190	0.58	-0.7
1,373,646	-		HER17_RS06190	0.58	-1.4
1,373,728	+		HER17_RS06190	0.66	-0.5
1,373,851	-		HER17_RS06190	0.78	-0.5
1,373,851	-		HER17_RS06190	0.78	+2.1
1,373,851	-		HER17_RS06190	0.78	-0.5
1,373,875	+		HER17_RS06190	0.80	-0.2
1,373,962	-		HER17_RS06190	0.89	-0.4
1,373,985	+				-0.0
1,373,985	+				+1.3
1,373,986	-				-0.0
1,374,031	+				+0.3
1,374,032	-				+0.1
1,374,032	-				-0.6
1,374,078	+				-0.4
1,374,078	+				+0.5
1,374,078	+				-0.7
1,374,079	-				+0.3
1,374,245	+				+0.2
1,374,264	-				+0.2
1,374,264	-				+0.3
1,374,344	+		HER17_RS06195	0.13	+0.0
1,374,350	+		HER17_RS06195	0.13	+0.8
1,374,358	+		HER17_RS06195	0.14	+0.7
1,374,359	-		HER17_RS06195	0.15	+0.0
1,374,412	+		HER17_RS06195	0.21	-0.0
1,374,463	+		HER17_RS06195	0.28	+0.8
1,374,590	+		HER17_RS06195	0.44	-1.6
1,374,590	+		HER17_RS06195	0.44	-0.8
1,374,590	+		HER17_RS06195	0.44	-0.8
1,374,590	+		HER17_RS06195	0.44	-0.1
1,374,594	+		HER17_RS06195	0.45	-1.0
1,374,594	+		HER17_RS06195	0.45	-0.5
1,374,595	-		HER17_RS06195	0.45	-0.8
1,374,641	-		HER17_RS06195	0.51	-0.3
1,374,686	+		HER17_RS06195	0.57	-1.0
1,374,721	-		HER17_RS06195	0.61	+0.3
1,374,881	-		HER17_RS06195	0.82	-0.6
1,374,881	-		HER17_RS06195	0.82	+0.2
1,374,881	-		HER17_RS06195	0.82	-0.1
1,374,936	-		HER17_RS06195	0.89	-0.5
1,374,936	-		HER17_RS06195	0.89	+0.5
1,374,936	-		HER17_RS06195	0.89	+0.1
1,374,936	-		HER17_RS06195	0.89	+0.6
1,374,945	-				+0.1
1,374,950	+				-0.7
1,374,950	+				-0.4
1,374,950	+				+0.2
1,374,950	+				+0.5
1,374,950	+				-1.0
1,374,951	-				+0.4
1,374,951	-				-0.1
1,374,951	-				+0.5
1,374,951	-				-0.5
1,374,989	+				-1.4
1,375,013	+				+1.4
1,375,014	-				+0.1
1,375,017	+				+0.5
1,375,017	+				+1.1
1,375,018	-				+0.2
1,375,018	-				-0.8
1,375,018	-				+0.3
1,375,065	-				+0.8
1,375,065	-				-0.3
1,375,065	-				-0.5
1,375,065	-				+0.1
1,375,068	+				+1.2
1,375,069	-				-1.2
1,375,069	-				+0.0
1,375,070	+				+0.3
1,375,070	+				+0.4
1,375,070	+				-0.7
1,375,070	+				+1.3
1,375,071	-				-0.2
1,375,071	-				-0.1
1,375,071	-				-1.2
1,375,072	-				+0.4
1,375,081	-				-0.7
1,375,137	-		HER17_RS06200	0.13	-0.2
1,375,194	-		HER17_RS06200	0.23	-0.4
1,375,202	+		HER17_RS06200	0.24	-0.6
1,375,203	-		HER17_RS06200	0.24	-0.6
1,375,235	+		HER17_RS06200	0.29	-0.3
1,375,235	+		HER17_RS06200	0.29	-1.2
1,375,235	+		HER17_RS06200	0.29	-0.7
1,375,343	-		HER17_RS06200	0.47	-0.8
1,375,410	+		HER17_RS06200	0.57	+0.0
1,375,414	+		HER17_RS06200	0.58	+0.5
1,375,414	+		HER17_RS06200	0.58	+1.1
1,375,440	-		HER17_RS06200	0.62	-0.5
1,375,486	+		HER17_RS06200	0.70	+1.0
1,375,486	+		HER17_RS06200	0.70	+0.7
1,375,488	+		HER17_RS06200	0.70	-0.3
1,375,488	+		HER17_RS06200	0.70	-0.2
1,375,491	+		HER17_RS06200	0.70	+0.4
1,375,491	+		HER17_RS06200	0.70	-0.5
1,375,491	+		HER17_RS06200	0.70	-0.0
1,375,505	+		HER17_RS06200	0.73	+0.2
1,375,505	+		HER17_RS06200	0.73	+0.4
1,375,567	-		HER17_RS06200	0.83	-1.0
1,375,668	-				+0.5
1,375,680	-				-0.6
1,375,682	-				+0.3
1,375,741	-				+1.3
1,375,804	-		HER17_RS06205	0.29	+0.1
1,375,860	+		HER17_RS06205	0.47	+0.1
1,375,861	-		HER17_RS06205	0.48	+0.0
1,375,949	+		HER17_RS06205	0.76	-0.4