Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06035

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,338,415	-				+0.3
1,338,420	+				+1.4
1,338,420	+				+0.6
1,338,420	+				+0.0
1,338,420	+				+0.3
1,338,420	+				-0.4
1,338,421	-				+0.5
1,338,421	-				-0.1
1,338,421	-				-0.9
1,338,421	-				-0.3
1,338,538	+		HER17_RS06025	0.36	-0.2
1,338,539	-		HER17_RS06025	0.36	+0.8
1,338,539	-		HER17_RS06025	0.36	+0.3
1,338,539	-		HER17_RS06025	0.36	+0.5
1,338,631	+		HER17_RS06025	0.65	+0.2
1,338,631	+		HER17_RS06025	0.65	-0.1
1,338,631	+		HER17_RS06025	0.65	-0.1
1,338,632	-		HER17_RS06025	0.65	-0.1
1,338,632	-		HER17_RS06025	0.65	-1.4
1,338,632	-		HER17_RS06025	0.65	+0.2
1,338,632	-		HER17_RS06025	0.65	-0.4
1,338,684	+		HER17_RS06025	0.81	+0.0
1,338,684	+		HER17_RS06025	0.81	-0.1
1,338,810	-				-0.8
1,338,810	-				+0.3
1,338,822	+				+1.5
1,338,823	-				+0.3
1,338,823	-				+1.3
1,338,823	-				-0.1
1,338,828	-				+0.1
1,338,828	-				+0.4
1,338,828	-				-0.2
1,338,852	+				-0.2
1,339,023	+		HER17_RS06030	0.40	+0.2
1,339,023	+		HER17_RS06030	0.40	-0.9
1,339,023	+		HER17_RS06030	0.40	-1.9
1,339,023	+		HER17_RS06030	0.40	+0.8
1,339,023	+		HER17_RS06030	0.40	+0.4
1,339,023	+		HER17_RS06030	0.40	-0.5
1,339,024	-		HER17_RS06030	0.40	-0.3
1,339,024	-		HER17_RS06030	0.40	+0.7
1,339,024	-		HER17_RS06030	0.40	+1.4
1,339,024	-		HER17_RS06030	0.40	+0.3
1,339,025	+		HER17_RS06030	0.40	-0.2
1,339,025	+		HER17_RS06030	0.40	-0.3
1,339,025	+		HER17_RS06030	0.40	-0.1
1,339,025	+		HER17_RS06030	0.40	+0.1
1,339,026	-		HER17_RS06030	0.40	+0.0
1,339,026	-		HER17_RS06030	0.40	-0.1
1,339,067	+		HER17_RS06030	0.48	+0.5
1,339,067	+		HER17_RS06030	0.48	-0.5
1,339,067	+		HER17_RS06030	0.48	-0.7
1,339,067	+		HER17_RS06030	0.48	-0.1
1,339,068	-		HER17_RS06030	0.49	+0.5
1,339,068	-		HER17_RS06030	0.49	+0.8
1,339,068	-		HER17_RS06030	0.49	+0.4
1,339,211	+		HER17_RS06030	0.76	+0.9
1,339,211	+		HER17_RS06030	0.76	-0.3
1,339,212	-		HER17_RS06030	0.76	+0.1
1,339,212	-		HER17_RS06030	0.76	+0.3
1,339,212	-		HER17_RS06030	0.76	+0.1
1,339,270	+		HER17_RS06030	0.87	+0.3
1,339,271	-		HER17_RS06030	0.88	-0.2
1,339,332	+				-0.0
1,339,332	+				-0.0
1,339,333	-				+0.1
1,339,333	-				+0.9
1,339,333	-				+0.0
1,339,333	-				-2.4
1,339,333	-				+0.0
1,339,333	-				-0.3
1,339,367	+				-1.4
1,339,368	-				+0.7
1,339,368	-				-0.3
1,339,418	-				-0.1
1,339,418	-				-0.1
1,339,418	-				-0.1
1,339,421	-				+0.9
1,339,517	-				-0.3
1,339,629	-		HER17_RS06035	0.12	-0.3
1,339,629	-		HER17_RS06035	0.12	-0.0
1,339,718	-		HER17_RS06035	0.17	+0.0
1,339,718	-		HER17_RS06035	0.17	-0.2
1,339,723	-		HER17_RS06035	0.17	+0.6
1,339,871	+		HER17_RS06035	0.25	-0.1
1,339,884	+		HER17_RS06035	0.26	-1.2
1,339,885	-		HER17_RS06035	0.26	-0.2
1,340,026	-		HER17_RS06035	0.33	-0.7
1,340,051	+		HER17_RS06035	0.35	+0.3
1,340,051	+		HER17_RS06035	0.35	+1.0
1,340,051	+		HER17_RS06035	0.35	+0.1
1,340,052	-		HER17_RS06035	0.35	-0.2
1,340,266	+		HER17_RS06035	0.46	+0.1
1,340,267	-		HER17_RS06035	0.46	-0.4
1,340,452	+		HER17_RS06035	0.56	-0.1
1,340,452	+		HER17_RS06035	0.56	-0.4
1,340,642	+		HER17_RS06035	0.67	+0.4
1,340,642	+		HER17_RS06035	0.67	-1.0
1,340,643	-		HER17_RS06035	0.67	-0.1
1,340,645	+		HER17_RS06035	0.67	+0.7
1,340,645	+		HER17_RS06035	0.67	+0.4
1,340,645	+		HER17_RS06035	0.67	-0.8
1,340,821	+		HER17_RS06035	0.76	+0.2
1,340,913	+		HER17_RS06035	0.81	+0.3
1,340,914	-		HER17_RS06035	0.81	-0.5
1,341,119	+				+1.0
1,341,120	-				-0.5
1,341,120	-				-0.4
1,341,120	-				-0.4
1,341,164	+				-0.4
1,341,164	+				+0.6
1,341,218	+				-0.1
1,341,258	+				-1.1
1,341,258	+				-0.4
1,341,259	-				+0.2
1,341,259	-				+0.7
1,341,267	+				-0.4
1,341,268	-				-0.8
1,341,456	+		HER17_RS06040	0.58	-1.0
1,341,532	-		HER17_RS06040	0.80	-0.6
1,341,569	-				+0.1
1,341,570	+				-0.1
1,341,570	+				+0.4
1,341,570	+				-0.1
1,341,571	-				-0.2
1,341,664	+		HER17_RS06045	0.22	-0.6
1,341,823	+				-0.0
1,341,824	-				+0.3
1,341,824	-				-0.9
1,341,824	-				+0.8
1,341,824	-				-0.1
1,341,899	+				+0.1
1,341,900	-				-0.8
1,341,900	-				+0.1
1,341,903	+				-0.5
1,341,918	+				+0.0
1,341,918	+				+0.6
1,341,918	+				+0.2
1,341,919	-				+0.2
1,341,919	-				+0.2
1,341,919	-				-0.2
1,341,919	-				+1.3
1,341,922	+				+0.2
1,341,922	+				-0.4
1,341,922	+				+0.5
1,341,923	-				+0.9
1,341,923	-				+0.6
1,341,923	-				-0.6
1,341,924	+				-0.2
1,341,925	-				+0.8
1,341,940	+				-0.1
1,341,940	+				+0.9
1,341,940	+				-0.1
1,341,941	-				+0.4
1,341,955	-				-0.2
1,341,963	+				-0.2
1,341,963	+				-0.4
1,341,973	+				+0.2
1,341,973	+				+1.8
1,341,973	+				-0.4
1,341,974	-				+0.1
1,341,974	-				-0.3
1,341,974	-				-1.3
1,341,974	-				-0.4
1,341,974	-				+0.0
1,342,010	+				+0.0
1,342,010	+				+0.6
1,342,011	-				+0.3
1,342,011	-				+0.2
1,342,011	-				+0.4
1,342,014	+				-0.5
1,342,014	+				+0.8
1,342,014	+				-0.7
1,342,014	+				+0.5
1,342,015	-				+0.2
1,342,031	+				-0.4
1,342,032	-				-0.5
1,342,043	+				+0.5
1,342,043	+				+0.0
1,342,044	-				+0.1
1,342,044	-				-0.1
1,342,214	+		HER17_RS06050	0.14	-0.4
1,342,215	-		HER17_RS06050	0.14	+0.6
1,342,215	-		HER17_RS06050	0.14	+0.0
1,342,215	-		HER17_RS06050	0.14	-0.2
1,342,224	-		HER17_RS06050	0.15	-1.0
1,342,224	-		HER17_RS06050	0.15	-0.1
1,342,224	-		HER17_RS06050	0.15	-0.8