Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05835

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,277,873	-		HER17_RS05825	0.76	+0.5
1,277,873	-		HER17_RS05825	0.76	+0.2
1,278,014	+				-0.1
1,278,014	+				-0.3
1,278,014	+				-0.4
1,278,014	+				-0.2
1,278,014	+				-0.5
1,278,087	-				+0.6
1,278,098	+				+0.3
1,278,098	+				-0.4
1,278,099	-				-0.4
1,278,124	+				+0.5
1,278,124	+				-0.7
1,278,125	-				+0.2
1,278,125	-				-0.1
1,278,506	-		HER17_RS05830	0.52	+0.5
1,278,579	-		HER17_RS05830	0.62	-1.2
1,278,616	-		HER17_RS05830	0.67	+0.5
1,278,616	-		HER17_RS05830	0.67	+0.6
1,278,669	-		HER17_RS05830	0.74	-0.3
1,278,688	+		HER17_RS05830	0.77	+1.3
1,278,857	+				-1.0
1,278,886	-				+0.1
1,278,977	-		HER17_RS05835	0.31	+1.4
1,279,208	-				-1.0
1,279,259	+				-0.2
1,279,259	+				-0.1
1,279,260	-				-0.0
1,279,260	-				+0.2
1,279,260	-				+0.2
1,279,260	-				-0.5
1,279,345	-		HER17_RS05840	0.33	-0.9
1,279,374	+		HER17_RS05840	0.44	-0.4
1,279,374	+		HER17_RS05840	0.44	+0.6
1,279,375	-		HER17_RS05840	0.45	+0.4
1,279,375	-		HER17_RS05840	0.45	-0.2
1,279,375	-		HER17_RS05840	0.45	+1.2
1,279,375	-		HER17_RS05840	0.45	+0.8
1,279,375	-		HER17_RS05840	0.45	-0.4
1,279,385	+		HER17_RS05840	0.49	-0.2
1,279,386	-		HER17_RS05840	0.49	-0.8
1,279,405	-		HER17_RS05840	0.56	-0.5
1,279,428	-		HER17_RS05840	0.65	+0.4
1,279,449	+		HER17_RS05840	0.73	+0.2
1,279,449	+		HER17_RS05840	0.73	-0.3
1,279,449	+		HER17_RS05840	0.73	-0.6
1,279,459	-		HER17_RS05840	0.77	-0.7
1,279,459	-		HER17_RS05840	0.77	+0.1
1,279,511	-				-0.5
1,279,511	-				+0.8
1,279,530	-				-0.3
1,279,530	-				-0.5
1,279,534	+				-0.9
1,279,534	+				-0.7
1,279,535	-				-0.7
1,279,552	+				-0.2
1,279,554	+				-1.3
1,279,554	+				+0.5
1,279,555	-				-0.2
1,279,582	+				-0.1
1,279,583	-				-1.1
1,279,602	+				-1.7
1,279,603	-				-1.2
1,279,603	-				-0.0
1,279,603	-				+0.7
1,279,603	-				-0.3
1,279,603	-				-0.1
1,279,604	+				+0.6
1,279,604	+				+0.8
1,279,604	+				+1.0
1,279,605	-				-0.1
1,279,712	+				+0.1
1,279,712	+				+0.2
1,279,713	-				+0.4
1,279,713	-				-0.3
1,279,713	-				-0.6
1,279,716	+				-1.0
1,279,717	-				+0.1
1,279,733	-				+0.6
1,279,753	-				+0.0
1,279,763	+				+0.2
1,279,764	-				-0.9
1,279,764	-				+0.2
1,279,765	+				+0.0
1,279,766	-				+0.4
1,279,766	-				-0.2
1,279,769	+				+0.6
1,279,769	+				-0.7
1,279,769	+				+0.1
1,279,770	-				-0.6
1,279,819	+				-0.2
1,279,881	+				-0.2
1,279,882	-				+0.4
1,279,882	-				-1.0
1,279,954	+				-0.1
1,279,954	+				+0.1
1,279,955	-				-0.9
1,279,959	+				+0.1
1,279,960	-				+0.3
1,279,961	+				-0.2
1,279,967	+				+0.3
1,279,968	-				-0.8
1,279,973	+				-0.6
1,279,973	+				-1.1
1,279,973	+				+0.4
1,279,974	-				-0.8
1,279,974	-				-0.0
1,279,974	-				+0.7
1,279,974	-				-1.0
1,279,974	-				-0.6
1,279,974	-				-0.3
1,279,974	-				-0.3
1,279,974	-				-0.0
1,279,976	+				+1.1
1,280,024	+				+0.0
1,280,125	-		HER17_RS05845	0.17	-0.5
1,280,144	-		HER17_RS05845	0.20	-0.7
1,280,214	+		HER17_RS05845	0.28	+0.2