Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04420

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,004,516	+		HER17_RS04405	0.86	+0.4
1,004,628	+				+0.3
1,004,637	+				+0.9
1,004,825	-				-0.2
1,004,844	-				-1.6
1,004,858	-				-0.7
1,004,875	+				+0.4
1,004,884	-				-1.1
1,004,924	+				+0.1
1,004,924	+				-0.4
1,004,925	-				+0.1
1,004,925	-				-0.6
1,004,925	-				+0.3
1,004,952	+				+0.7
1,004,952	+				-0.2
1,004,974	-				-0.4
1,004,974	-				-0.5
1,004,981	+				-0.0
1,004,982	-				-0.0
1,004,986	+				-0.2
1,005,030	+				-1.5
1,005,034	-				+0.1
1,005,051	-				+0.9
1,005,077	+				-0.1
1,005,078	-				-0.7
1,005,078	-				-1.1
1,005,092	-				-0.6
1,005,131	+				-0.5
1,005,133	+				-0.2
1,005,134	-				-0.3
1,005,177	+				+0.3
1,005,233	+		HER17_RS04420	0.12	+0.5
1,005,234	-		HER17_RS04420	0.12	+0.1
1,005,250	+		HER17_RS04420	0.13	-0.9
1,005,315	+		HER17_RS04420	0.18	+0.8
1,005,353	-		HER17_RS04420	0.21	-0.3
1,005,446	-		HER17_RS04420	0.28	+0.9
1,005,449	-		HER17_RS04420	0.29	-2.5
1,005,449	-		HER17_RS04420	0.29	-0.6
1,005,504	+		HER17_RS04420	0.33	+0.1
1,005,504	+		HER17_RS04420	0.33	-0.7
1,005,504	+		HER17_RS04420	0.33	-0.2
1,005,504	+		HER17_RS04420	0.33	-1.1
1,005,505	-		HER17_RS04420	0.33	+1.1
1,005,505	-		HER17_RS04420	0.33	+0.2
1,005,505	-		HER17_RS04420	0.33	-0.9
1,005,505	-		HER17_RS04420	0.33	+0.1
1,005,505	-		HER17_RS04420	0.33	-0.8
1,005,505	-		HER17_RS04420	0.33	+0.7
1,005,543	+		HER17_RS04420	0.36	-1.2
1,005,544	-		HER17_RS04420	0.36	-0.6
1,005,544	-		HER17_RS04420	0.36	+0.9
1,005,544	-		HER17_RS04420	0.36	+0.6
1,005,558	+		HER17_RS04420	0.37	-0.7
1,005,610	+		HER17_RS04420	0.41	-0.3
1,005,610	+		HER17_RS04420	0.41	-0.2
1,005,611	-		HER17_RS04420	0.41	+0.1
1,005,611	-		HER17_RS04420	0.41	-0.2
1,005,656	+		HER17_RS04420	0.45	-0.1
1,005,656	+		HER17_RS04420	0.45	-0.2
1,005,700	-		HER17_RS04420	0.48	-0.4
1,005,749	+		HER17_RS04420	0.52	-0.3
1,005,832	+		HER17_RS04420	0.59	-0.4
1,005,842	+		HER17_RS04420	0.59	+0.7
1,005,843	-		HER17_RS04420	0.59	+0.4
1,005,843	-		HER17_RS04420	0.59	+0.3
1,005,848	+		HER17_RS04420	0.60	-0.2
1,005,849	-		HER17_RS04420	0.60	-0.5
1,005,855	+		HER17_RS04420	0.60	-0.3
1,005,855	+		HER17_RS04420	0.60	-0.3
1,005,855	+		HER17_RS04420	0.60	-0.1
1,005,855	+		HER17_RS04420	0.60	+0.2
1,005,855	+		HER17_RS04420	0.60	-0.1
1,005,887	+		HER17_RS04420	0.63	-0.4
1,005,887	+		HER17_RS04420	0.63	+1.0
1,005,888	-		HER17_RS04420	0.63	+0.2
1,005,932	+		HER17_RS04420	0.66	-0.8
1,005,946	+		HER17_RS04420	0.68	-0.6
1,005,946	+		HER17_RS04420	0.68	+0.5
1,005,946	+		HER17_RS04420	0.68	-0.2
1,005,989	+		HER17_RS04420	0.71	+0.8
1,005,990	-		HER17_RS04420	0.71	+0.1
1,006,048	+		HER17_RS04420	0.75	+0.9
1,006,049	-		HER17_RS04420	0.76	+0.4
1,006,049	-		HER17_RS04420	0.76	+0.8
1,006,107	-		HER17_RS04420	0.80	-2.3
1,006,107	-		HER17_RS04420	0.80	+0.1
1,006,107	-		HER17_RS04420	0.80	-0.3
1,006,119	+		HER17_RS04420	0.81	-0.3
1,006,127	+		HER17_RS04420	0.82	+0.2
1,006,142	-		HER17_RS04420	0.83	-1.2
1,006,189	+		HER17_RS04420	0.86	-0.3
1,006,190	-		HER17_RS04420	0.87	-0.4
1,006,190	-		HER17_RS04420	0.87	+0.3
1,006,194	+		HER17_RS04420	0.87	-0.7
1,006,195	-		HER17_RS04420	0.87	-0.3
1,006,233	+		HER17_RS04420	0.90	+0.3
1,006,233	+		HER17_RS04420	0.90	+0.1
1,006,233	+		HER17_RS04420	0.90	-0.2
1,006,233	+		HER17_RS04420	0.90	+0.2
1,006,233	+		HER17_RS04420	0.90	-0.6
1,006,234	-				-1.2
1,006,234	-				+0.6
1,006,284	+				+0.1
1,006,284	+				+0.4
1,006,288	+				+0.2
1,006,288	+				-0.1
1,006,288	+				+0.3
1,006,289	-				+0.5
1,006,289	-				-0.6
1,006,289	-				+0.2
1,006,407	-				-0.4
1,006,425	-				-0.3
1,006,457	+				-0.7
1,006,457	+				-0.4
1,006,457	+				-0.9
1,006,458	-				-0.5
1,006,459	+				+0.0