Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04230

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS04225 and HER17_RS04230 are separated by 542 nucleotidesHER17_RS04230 and HER17_RS04235 are separated by 289 nucleotides HER17_RS04225: HER17_RS04225 - EAL domain-containing protein, at 964,545 to 965,285 _RS04225 HER17_RS04230: HER17_RS04230 - PilZ domain-containing protein, at 965,828 to 967,552 _RS04230 HER17_RS04235: HER17_RS04235 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 967,842 to 969,671 _RS04235 Position (kb) 965 966 967 968Strain fitness (log2 ratio) -3 -2 -1 0 1at 964.896 kb on + strand, within HER17_RS04225at 965.011 kb on - strand, within HER17_RS04225at 965.056 kb on - strand, within HER17_RS04225at 965.096 kb on + strand, within HER17_RS04225at 965.310 kb on + strandat 965.311 kb on - strandat 965.392 kb on + strandat 965.570 kb on + strandat 965.587 kb on + strandat 965.587 kb on + strandat 965.601 kb on + strandat 965.602 kb on - strandat 965.663 kb on + strandat 965.813 kb on + strandat 965.886 kb on - strandat 965.896 kb on + strandat 965.901 kb on - strandat 965.916 kb on + strandat 965.917 kb on - strandat 965.918 kb on + strandat 965.918 kb on + strandat 966.008 kb on + strand, within HER17_RS04230at 966.095 kb on - strand, within HER17_RS04230at 966.108 kb on + strand, within HER17_RS04230at 966.109 kb on - strand, within HER17_RS04230at 966.124 kb on + strand, within HER17_RS04230at 966.125 kb on - strand, within HER17_RS04230at 966.125 kb on - strand, within HER17_RS04230at 966.240 kb on - strand, within HER17_RS04230at 966.240 kb on - strand, within HER17_RS04230at 966.243 kb on + strand, within HER17_RS04230at 966.244 kb on - strand, within HER17_RS04230at 966.244 kb on - strand, within HER17_RS04230at 966.244 kb on - strand, within HER17_RS04230at 966.244 kb on - strand, within HER17_RS04230at 966.247 kb on + strand, within HER17_RS04230at 966.247 kb on + strand, within HER17_RS04230at 966.247 kb on + strand, within HER17_RS04230at 966.248 kb on - strand, within HER17_RS04230at 966.248 kb on - strand, within HER17_RS04230at 966.248 kb on - strand, within HER17_RS04230at 966.248 kb on - strand, within HER17_RS04230at 966.248 kb on - strand, within HER17_RS04230at 966.275 kb on - strand, within HER17_RS04230at 966.295 kb on + strand, within HER17_RS04230at 966.295 kb on + strand, within HER17_RS04230at 966.295 kb on + strand, within HER17_RS04230at 966.295 kb on + strand, within HER17_RS04230at 966.296 kb on - strand, within HER17_RS04230at 966.296 kb on - strand, within HER17_RS04230at 966.296 kb on - strand, within HER17_RS04230at 966.296 kb on - strand, within HER17_RS04230at 966.296 kb on - strand, within HER17_RS04230at 966.296 kb on - strand, within HER17_RS04230at 966.296 kb on - strand, within HER17_RS04230at 966.358 kb on + strand, within HER17_RS04230at 966.389 kb on + strand, within HER17_RS04230at 966.390 kb on - strand, within HER17_RS04230at 966.390 kb on - strand, within HER17_RS04230at 966.412 kb on + strand, within HER17_RS04230at 966.412 kb on + strand, within HER17_RS04230at 966.413 kb on - strand, within HER17_RS04230at 966.413 kb on - strand, within HER17_RS04230at 966.414 kb on + strand, within HER17_RS04230at 966.414 kb on + strand, within HER17_RS04230at 966.414 kb on + strand, within HER17_RS04230at 966.414 kb on + strand, within HER17_RS04230at 966.414 kb on + strand, within HER17_RS04230at 966.414 kb on + strand, within HER17_RS04230at 966.415 kb on - strand, within HER17_RS04230at 966.415 kb on - strand, within HER17_RS04230at 966.415 kb on - strand, within HER17_RS04230at 966.430 kb on + strand, within HER17_RS04230at 966.460 kb on + strand, within HER17_RS04230at 966.461 kb on - strand, within HER17_RS04230at 966.501 kb on - strand, within HER17_RS04230at 966.560 kb on + strand, within HER17_RS04230at 966.561 kb on - strand, within HER17_RS04230at 966.704 kb on + strand, within HER17_RS04230at 966.704 kb on + strand, within HER17_RS04230at 966.704 kb on + strand, within HER17_RS04230at 966.704 kb on + strand, within HER17_RS04230at 966.704 kb on + strand, within HER17_RS04230at 966.704 kb on + strand, within HER17_RS04230at 966.704 kb on + strand, within HER17_RS04230at 966.705 kb on - strand, within HER17_RS04230at 966.705 kb on - strand, within HER17_RS04230at 966.743 kb on + strand, within HER17_RS04230at 966.743 kb on + strand, within HER17_RS04230at 966.743 kb on + strand, within HER17_RS04230at 966.757 kb on + strand, within HER17_RS04230at 966.758 kb on - strand, within HER17_RS04230at 966.767 kb on + strand, within HER17_RS04230at 966.767 kb on + strand, within HER17_RS04230at 966.767 kb on + strand, within HER17_RS04230at 966.767 kb on + strand, within HER17_RS04230at 966.767 kb on + strand, within HER17_RS04230at 966.768 kb on - strand, within HER17_RS04230at 966.768 kb on - strand, within HER17_RS04230at 966.768 kb on - strand, within HER17_RS04230at 966.768 kb on - strand, within HER17_RS04230at 966.768 kb on - strand, within HER17_RS04230at 966.768 kb on - strand, within HER17_RS04230at 966.768 kb on - strand, within HER17_RS04230at 966.768 kb on - strand, within HER17_RS04230at 966.768 kb on - strand, within HER17_RS04230at 966.769 kb on + strand, within HER17_RS04230at 966.770 kb on - strand, within HER17_RS04230at 966.770 kb on - strand, within HER17_RS04230at 966.770 kb on - strand, within HER17_RS04230at 966.770 kb on - strand, within HER17_RS04230at 966.800 kb on + strand, within HER17_RS04230at 966.801 kb on - strand, within HER17_RS04230at 966.882 kb on + strand, within HER17_RS04230at 966.883 kb on - strand, within HER17_RS04230at 966.883 kb on - strand, within HER17_RS04230at 966.883 kb on - strand, within HER17_RS04230at 966.883 kb on - strand, within HER17_RS04230at 966.933 kb on + strand, within HER17_RS04230at 966.933 kb on + strand, within HER17_RS04230at 966.994 kb on + strand, within HER17_RS04230at 966.994 kb on + strand, within HER17_RS04230at 967.053 kb on + strand, within HER17_RS04230at 967.062 kb on + strand, within HER17_RS04230at 967.062 kb on + strand, within HER17_RS04230at 967.063 kb on - strand, within HER17_RS04230at 967.205 kb on - strand, within HER17_RS04230at 967.228 kb on + strand, within HER17_RS04230at 967.228 kb on + strand, within HER17_RS04230at 967.268 kb on + strand, within HER17_RS04230at 967.269 kb on - strand, within HER17_RS04230at 967.286 kb on + strand, within HER17_RS04230at 967.286 kb on + strand, within HER17_RS04230at 967.287 kb on - strand, within HER17_RS04230at 967.287 kb on - strand, within HER17_RS04230at 967.287 kb on - strand, within HER17_RS04230at 967.291 kb on + strand, within HER17_RS04230at 967.292 kb on - strand, within HER17_RS04230at 967.310 kb on + strand, within HER17_RS04230at 967.310 kb on + strand, within HER17_RS04230at 967.311 kb on - strand, within HER17_RS04230at 967.311 kb on - strand, within HER17_RS04230at 967.311 kb on - strand, within HER17_RS04230at 967.311 kb on - strand, within HER17_RS04230at 967.355 kb on + strand, within HER17_RS04230at 967.387 kb on + strandat 967.393 kb on + strandat 967.448 kb on - strandat 967.453 kb on + strandat 967.664 kb on + strandat 967.694 kb on + strandat 967.695 kb on - strandat 967.711 kb on + strandat 967.711 kb on + strandat 967.711 kb on + strandat 967.711 kb on + strandat 967.714 kb on + strandat 967.731 kb on + strandat 967.738 kb on + strandat 967.778 kb on + strandat 967.778 kb on + strandat 967.779 kb on - strandat 967.796 kb on + strandat 967.797 kb on - strandat 967.847 kb on + strandat 967.848 kb on - strandat 967.895 kb on - strandat 967.956 kb on + strandat 968.047 kb on + strand, within HER17_RS04235at 968.167 kb on - strand, within HER17_RS04235at 968.337 kb on + strand, within HER17_RS04235at 968.389 kb on + strand, within HER17_RS04235at 968.389 kb on + strand, within HER17_RS04235at 968.389 kb on + strand, within HER17_RS04235at 968.389 kb on + strand, within HER17_RS04235

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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964,896 + HER17_RS04225 0.47 +0.0
965,011 - HER17_RS04225 0.63 -0.9
965,056 - HER17_RS04225 0.69 -0.4
965,096 + HER17_RS04225 0.74 +0.5
965,310 + -0.4
965,311 - +0.8
965,392 + +0.6
965,570 + -0.6
965,587 + +0.6
965,587 + -0.3
965,601 + +0.2
965,602 - +0.7
965,663 + +1.0
965,813 + -0.2
965,886 - +0.8
965,896 + +0.0
965,901 - -0.0
965,916 + +0.8
965,917 - -0.1
965,918 + +0.5
965,918 + +0.3
966,008 + HER17_RS04230 0.10 -0.7
966,095 - HER17_RS04230 0.15 +0.3
966,108 + HER17_RS04230 0.16 -0.7
966,109 - HER17_RS04230 0.16 +0.4
966,124 + HER17_RS04230 0.17 -0.9
966,125 - HER17_RS04230 0.17 -0.6
966,125 - HER17_RS04230 0.17 -0.4
966,240 - HER17_RS04230 0.24 -0.7
966,240 - HER17_RS04230 0.24 +0.9
966,243 + HER17_RS04230 0.24 +0.4
966,244 - HER17_RS04230 0.24 +0.2
966,244 - HER17_RS04230 0.24 +0.4
966,244 - HER17_RS04230 0.24 -0.3
966,244 - HER17_RS04230 0.24 -0.2
966,247 + HER17_RS04230 0.24 -1.3
966,247 + HER17_RS04230 0.24 +0.1
966,247 + HER17_RS04230 0.24 +0.3
966,248 - HER17_RS04230 0.24 -0.8
966,248 - HER17_RS04230 0.24 +0.3
966,248 - HER17_RS04230 0.24 +0.3
966,248 - HER17_RS04230 0.24 +0.2
966,248 - HER17_RS04230 0.24 +0.8
966,275 - HER17_RS04230 0.26 -0.6
966,295 + HER17_RS04230 0.27 +0.2
966,295 + HER17_RS04230 0.27 +0.2
966,295 + HER17_RS04230 0.27 +1.1
966,295 + HER17_RS04230 0.27 +0.0
966,296 - HER17_RS04230 0.27 -0.1
966,296 - HER17_RS04230 0.27 +0.4
966,296 - HER17_RS04230 0.27 +0.5
966,296 - HER17_RS04230 0.27 +0.0
966,296 - HER17_RS04230 0.27 +1.0
966,296 - HER17_RS04230 0.27 -0.0
966,296 - HER17_RS04230 0.27 -1.0
966,358 + HER17_RS04230 0.31 +0.2
966,389 + HER17_RS04230 0.33 +0.1
966,390 - HER17_RS04230 0.33 +0.1
966,390 - HER17_RS04230 0.33 +0.1
966,412 + HER17_RS04230 0.34 -0.2
966,412 + HER17_RS04230 0.34 -0.1
966,413 - HER17_RS04230 0.34 +0.4
966,413 - HER17_RS04230 0.34 +0.1
966,414 + HER17_RS04230 0.34 +0.9
966,414 + HER17_RS04230 0.34 +0.5
966,414 + HER17_RS04230 0.34 -0.4
966,414 + HER17_RS04230 0.34 -0.3
966,414 + HER17_RS04230 0.34 +1.4
966,414 + HER17_RS04230 0.34 +0.2
966,415 - HER17_RS04230 0.34 +0.0
966,415 - HER17_RS04230 0.34 -1.0
966,415 - HER17_RS04230 0.34 -0.1
966,430 + HER17_RS04230 0.35 -0.8
966,460 + HER17_RS04230 0.37 -0.0
966,461 - HER17_RS04230 0.37 +0.3
966,501 - HER17_RS04230 0.39 +0.0
966,560 + HER17_RS04230 0.42 -0.3
966,561 - HER17_RS04230 0.42 +0.2
966,704 + HER17_RS04230 0.51 +0.6
966,704 + HER17_RS04230 0.51 +0.5
966,704 + HER17_RS04230 0.51 -0.1
966,704 + HER17_RS04230 0.51 +0.0
966,704 + HER17_RS04230 0.51 +0.1
966,704 + HER17_RS04230 0.51 +0.1
966,704 + HER17_RS04230 0.51 +0.8
966,705 - HER17_RS04230 0.51 +1.0
966,705 - HER17_RS04230 0.51 -0.8
966,743 + HER17_RS04230 0.53 -0.4
966,743 + HER17_RS04230 0.53 +0.0
966,743 + HER17_RS04230 0.53 +0.3
966,757 + HER17_RS04230 0.54 -0.4
966,758 - HER17_RS04230 0.54 -0.6
966,767 + HER17_RS04230 0.54 -0.3
966,767 + HER17_RS04230 0.54 -2.0
966,767 + HER17_RS04230 0.54 -0.6
966,767 + HER17_RS04230 0.54 -0.5
966,767 + HER17_RS04230 0.54 +0.4
966,768 - HER17_RS04230 0.54 -0.3
966,768 - HER17_RS04230 0.54 +1.0
966,768 - HER17_RS04230 0.54 -0.2
966,768 - HER17_RS04230 0.54 +0.6
966,768 - HER17_RS04230 0.54 -1.0
966,768 - HER17_RS04230 0.54 +0.5
966,768 - HER17_RS04230 0.54 +0.1
966,768 - HER17_RS04230 0.54 -0.8
966,768 - HER17_RS04230 0.54 -0.2
966,769 + HER17_RS04230 0.55 +1.1
966,770 - HER17_RS04230 0.55 +1.1
966,770 - HER17_RS04230 0.55 -0.4
966,770 - HER17_RS04230 0.55 +0.6
966,770 - HER17_RS04230 0.55 +0.6
966,800 + HER17_RS04230 0.56 -1.0
966,801 - HER17_RS04230 0.56 -0.4
966,882 + HER17_RS04230 0.61 +0.1
966,883 - HER17_RS04230 0.61 +0.1
966,883 - HER17_RS04230 0.61 -0.5
966,883 - HER17_RS04230 0.61 +0.8
966,883 - HER17_RS04230 0.61 +0.5
966,933 + HER17_RS04230 0.64 +1.1
966,933 + HER17_RS04230 0.64 -0.5
966,994 + HER17_RS04230 0.68 -0.2
966,994 + HER17_RS04230 0.68 -0.2
967,053 + HER17_RS04230 0.71 -2.9
967,062 + HER17_RS04230 0.72 -3.0
967,062 + HER17_RS04230 0.72 -0.2
967,063 - HER17_RS04230 0.72 +0.8
967,205 - HER17_RS04230 0.80 +0.1
967,228 + HER17_RS04230 0.81 -0.3
967,228 + HER17_RS04230 0.81 -0.2
967,268 + HER17_RS04230 0.83 -1.1
967,269 - HER17_RS04230 0.84 +0.1
967,286 + HER17_RS04230 0.85 +0.0
967,286 + HER17_RS04230 0.85 -0.5
967,287 - HER17_RS04230 0.85 -0.1
967,287 - HER17_RS04230 0.85 -0.2
967,287 - HER17_RS04230 0.85 -0.1
967,291 + HER17_RS04230 0.85 -0.6
967,292 - HER17_RS04230 0.85 -0.9
967,310 + HER17_RS04230 0.86 -0.0
967,310 + HER17_RS04230 0.86 +0.7
967,311 - HER17_RS04230 0.86 -0.9
967,311 - HER17_RS04230 0.86 -0.7
967,311 - HER17_RS04230 0.86 +0.1
967,311 - HER17_RS04230 0.86 -0.2
967,355 + HER17_RS04230 0.89 -0.5
967,387 + +0.2
967,393 + -0.2
967,448 - +0.1
967,453 + -0.4
967,664 + -0.1
967,694 + -0.6
967,695 - -0.8
967,711 + -0.2
967,711 + +0.0
967,711 + +0.1
967,711 + -0.1
967,714 + +0.4
967,731 + -0.8
967,738 + -1.7
967,778 + -0.5
967,778 + +0.2
967,779 - +0.3
967,796 + -1.2
967,797 - +0.1
967,847 + -0.7
967,848 - -0.3
967,895 - -2.8
967,956 + +0.2
968,047 + HER17_RS04235 0.11 -0.1
968,167 - HER17_RS04235 0.18 +0.3
968,337 + HER17_RS04235 0.27 +0.6
968,389 + HER17_RS04235 0.30 -0.2
968,389 + HER17_RS04235 0.30 +0.1
968,389 + HER17_RS04235 0.30 -0.3
968,389 + HER17_RS04235 0.30 +1.2

Or see this region's nucleotide sequence