Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03885 and HER17_RS03890 are separated by 181 nucleotides HER17_RS03890 and HER17_RS03895 are separated by 5 nucleotides HER17_RS03895 and HER17_RS03900 are separated by 4 nucleotides HER17_RS03900 and HER17_RS03905 are separated by 41 nucleotides
HER17_RS03885: HER17_RS03885 - esterase, at 879,228 to 879,980
_RS03885
HER17_RS03890: HER17_RS03890 - 30S ribosomal protein S6, at 880,162 to 880,554
_RS03890
HER17_RS03895: HER17_RS03895 - primosomal replication protein N, at 880,560 to 880,880
_RS03895
HER17_RS03900: HER17_RS03900 - 30S ribosomal protein S18, at 880,885 to 881,112
_RS03900
HER17_RS03905: HER17_RS03905 - 50S ribosomal protein L9, at 881,154 to 881,606
_RS03905
Position (kb) 880
881 Strain fitness (log2 ratio) -2
-1
0
1
2 at 879.192 kb on + strand at 879.192 kb on + strand at 879.192 kb on + strand at 879.227 kb on + strand at 879.227 kb on + strand at 879.227 kb on + strand at 879.228 kb on - strand at 879.228 kb on - strand at 879.228 kb on - strand at 879.284 kb on - strand at 879.357 kb on + strand, within HER17_RS03885 at 879.357 kb on + strand, within HER17_RS03885 at 879.357 kb on + strand, within HER17_RS03885 at 879.357 kb on + strand, within HER17_RS03885 at 879.357 kb on + strand, within HER17_RS03885 at 879.358 kb on - strand, within HER17_RS03885 at 879.436 kb on - strand, within HER17_RS03885 at 879.436 kb on - strand, within HER17_RS03885 at 879.436 kb on - strand, within HER17_RS03885 at 879.436 kb on - strand, within HER17_RS03885 at 879.437 kb on + strand, within HER17_RS03885 at 879.477 kb on - strand, within HER17_RS03885 at 879.510 kb on + strand, within HER17_RS03885 at 879.511 kb on - strand, within HER17_RS03885 at 879.523 kb on - strand, within HER17_RS03885 at 879.603 kb on - strand, within HER17_RS03885 at 879.623 kb on + strand, within HER17_RS03885 at 879.623 kb on + strand, within HER17_RS03885 at 879.624 kb on - strand, within HER17_RS03885 at 879.641 kb on + strand, within HER17_RS03885 at 879.641 kb on + strand, within HER17_RS03885 at 879.642 kb on - strand, within HER17_RS03885 at 879.753 kb on + strand, within HER17_RS03885 at 879.753 kb on + strand, within HER17_RS03885 at 879.753 kb on + strand, within HER17_RS03885 at 879.754 kb on - strand, within HER17_RS03885 at 879.866 kb on - strand, within HER17_RS03885 at 879.888 kb on - strand, within HER17_RS03885 at 879.898 kb on - strand, within HER17_RS03885 at 879.978 kb on + strand at 879.979 kb on - strand at 879.979 kb on - strand at 879.998 kb on - strand at 881.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 879,192 + +0.2 879,192 + +0.3 879,192 + +0.2 879,227 + +0.2 879,227 + -1.1 879,227 + +0.2 879,228 - -0.3 879,228 - +1.7 879,228 - +0.7 879,284 - -0.1 879,357 + HER17_RS03885 0.17 -0.2 879,357 + HER17_RS03885 0.17 +0.1 879,357 + HER17_RS03885 0.17 +0.3 879,357 + HER17_RS03885 0.17 +0.3 879,357 + HER17_RS03885 0.17 +0.5 879,358 - HER17_RS03885 0.17 +1.8 879,436 - HER17_RS03885 0.28 +0.1 879,436 - HER17_RS03885 0.28 -2.4 879,436 - HER17_RS03885 0.28 +0.1 879,436 - HER17_RS03885 0.28 +0.0 879,437 + HER17_RS03885 0.28 -0.4 879,477 - HER17_RS03885 0.33 +0.2 879,510 + HER17_RS03885 0.37 -0.2 879,511 - HER17_RS03885 0.38 -0.1 879,523 - HER17_RS03885 0.39 -0.5 879,603 - HER17_RS03885 0.50 +0.8 879,623 + HER17_RS03885 0.52 +0.6 879,623 + HER17_RS03885 0.52 +0.3 879,624 - HER17_RS03885 0.53 +0.2 879,641 + HER17_RS03885 0.55 +0.6 879,641 + HER17_RS03885 0.55 -0.7 879,642 - HER17_RS03885 0.55 +0.1 879,753 + HER17_RS03885 0.70 +0.7 879,753 + HER17_RS03885 0.70 +0.1 879,753 + HER17_RS03885 0.70 -0.0 879,754 - HER17_RS03885 0.70 -0.1 879,866 - HER17_RS03885 0.85 -1.0 879,888 - HER17_RS03885 0.88 +1.4 879,898 - HER17_RS03885 0.89 -0.1 879,978 + -0.2 879,979 - +0.8 879,979 - +0.9 879,998 - +0.2 881,153 - +0.8
Or see this region's nucleotide sequence