Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03485 and HER17_RS03490 are separated by 163 nucleotides HER17_RS03490 and HER17_RS03495 overlap by 4 nucleotides HER17_RS03495 and HER17_RS03500 overlap by 4 nucleotides
HER17_RS03485: HER17_RS03485 - metallophosphoesterase, at 791,764 to 793,587
_RS03485
HER17_RS03490: HER17_RS03490 - glucosamine kinase, at 793,751 to 794,659
_RS03490
HER17_RS03495: HER17_RS03495 - glucosamine kinase, at 794,656 to 795,207
_RS03495
HER17_RS03500: HER17_RS03500 - ABC transporter substrate-binding protein, at 795,204 to 796,511
_RS03500
Position (kb) 793
794
795 Strain fitness (log2 ratio) -1
0
1 at 792.842 kb on + strand, within HER17_RS03485 at 792.842 kb on + strand, within HER17_RS03485 at 792.897 kb on - strand, within HER17_RS03485 at 793.005 kb on - strand, within HER17_RS03485 at 793.143 kb on + strand, within HER17_RS03485 at 793.144 kb on - strand, within HER17_RS03485 at 793.197 kb on - strand, within HER17_RS03485 at 793.231 kb on - strand, within HER17_RS03485 at 793.274 kb on + strand, within HER17_RS03485 at 793.275 kb on - strand, within HER17_RS03485 at 793.325 kb on + strand, within HER17_RS03485 at 793.372 kb on - strand, within HER17_RS03485 at 793.372 kb on - strand, within HER17_RS03485 at 793.424 kb on + strand at 793.437 kb on + strand at 793.437 kb on + strand at 793.437 kb on + strand at 793.471 kb on - strand at 793.534 kb on - strand at 793.534 kb on - strand at 793.591 kb on + strand at 793.591 kb on + strand at 793.591 kb on + strand at 793.592 kb on - strand at 793.592 kb on - strand at 793.637 kb on - strand at 793.637 kb on - strand at 793.637 kb on - strand at 793.637 kb on - strand at 793.637 kb on - strand at 793.639 kb on - strand at 793.639 kb on - strand at 793.639 kb on - strand at 793.639 kb on - strand at 793.639 kb on - strand at 793.641 kb on - strand at 793.641 kb on - strand at 793.641 kb on - strand at 793.650 kb on - strand at 793.650 kb on - strand at 793.650 kb on - strand at 793.752 kb on + strand at 793.756 kb on + strand at 793.761 kb on + strand at 793.761 kb on + strand at 793.761 kb on + strand at 793.763 kb on + strand at 793.763 kb on + strand at 793.770 kb on + strand at 793.785 kb on - strand at 793.864 kb on + strand, within HER17_RS03490 at 793.864 kb on + strand, within HER17_RS03490 at 793.865 kb on - strand, within HER17_RS03490 at 793.865 kb on - strand, within HER17_RS03490 at 793.865 kb on - strand, within HER17_RS03490 at 793.865 kb on - strand, within HER17_RS03490 at 793.868 kb on + strand, within HER17_RS03490 at 793.868 kb on + strand, within HER17_RS03490 at 793.868 kb on + strand, within HER17_RS03490 at 793.868 kb on + strand, within HER17_RS03490 at 793.868 kb on + strand, within HER17_RS03490 at 793.868 kb on + strand, within HER17_RS03490 at 793.869 kb on - strand, within HER17_RS03490 at 793.869 kb on - strand, within HER17_RS03490 at 793.869 kb on - strand, within HER17_RS03490 at 793.906 kb on + strand, within HER17_RS03490 at 793.906 kb on + strand, within HER17_RS03490 at 793.907 kb on - strand, within HER17_RS03490 at 793.969 kb on - strand, within HER17_RS03490 at 794.025 kb on + strand, within HER17_RS03490 at 794.026 kb on - strand, within HER17_RS03490 at 794.026 kb on - strand, within HER17_RS03490 at 794.169 kb on + strand, within HER17_RS03490 at 794.169 kb on + strand, within HER17_RS03490 at 794.169 kb on + strand, within HER17_RS03490 at 794.170 kb on - strand, within HER17_RS03490 at 794.170 kb on - strand, within HER17_RS03490 at 794.170 kb on - strand, within HER17_RS03490 at 794.170 kb on - strand, within HER17_RS03490 at 794.170 kb on - strand, within HER17_RS03490 at 794.173 kb on + strand, within HER17_RS03490 at 794.173 kb on + strand, within HER17_RS03490 at 794.174 kb on - strand, within HER17_RS03490 at 794.174 kb on - strand, within HER17_RS03490 at 794.174 kb on - strand, within HER17_RS03490 at 794.174 kb on - strand, within HER17_RS03490 at 794.364 kb on - strand, within HER17_RS03490 at 794.377 kb on - strand, within HER17_RS03490 at 794.406 kb on + strand, within HER17_RS03490 at 794.459 kb on + strand, within HER17_RS03490 at 794.460 kb on - strand, within HER17_RS03490 at 794.543 kb on + strand, within HER17_RS03490 at 794.544 kb on - strand, within HER17_RS03490 at 794.598 kb on + strand at 794.599 kb on - strand at 794.599 kb on - strand at 794.620 kb on + strand at 794.620 kb on + strand at 794.621 kb on - strand at 794.621 kb on - strand at 794.621 kb on - strand at 794.634 kb on - strand at 794.684 kb on + strand at 794.685 kb on - strand at 794.850 kb on - strand, within HER17_RS03495 at 795.104 kb on + strand, within HER17_RS03495 at 795.286 kb on + strand at 795.286 kb on + strand at 795.287 kb on - strand at 795.317 kb on - strand at 795.394 kb on + strand, within HER17_RS03500 at 795.394 kb on + strand, within HER17_RS03500 at 795.394 kb on + strand, within HER17_RS03500 at 795.395 kb on - strand, within HER17_RS03500 at 795.395 kb on - strand, within HER17_RS03500 at 795.452 kb on + strand, within HER17_RS03500 at 795.452 kb on + strand, within HER17_RS03500 at 795.453 kb on - strand, within HER17_RS03500 at 795.453 kb on - strand, within HER17_RS03500 at 795.453 kb on - strand, within HER17_RS03500 at 795.626 kb on + strand, within HER17_RS03500 at 795.626 kb on + strand, within HER17_RS03500 at 795.626 kb on + strand, within HER17_RS03500 at 795.627 kb on - strand, within HER17_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 792,842 + HER17_RS03485 0.59 +0.5 792,842 + HER17_RS03485 0.59 -0.6 792,897 - HER17_RS03485 0.62 +0.4 793,005 - HER17_RS03485 0.68 -0.1 793,143 + HER17_RS03485 0.76 -0.2 793,144 - HER17_RS03485 0.76 -0.2 793,197 - HER17_RS03485 0.79 -0.7 793,231 - HER17_RS03485 0.80 +1.1 793,274 + HER17_RS03485 0.83 -0.5 793,275 - HER17_RS03485 0.83 -0.6 793,325 + HER17_RS03485 0.86 -0.1 793,372 - HER17_RS03485 0.88 -0.5 793,372 - HER17_RS03485 0.88 +0.5 793,424 + -0.2 793,437 + -0.2 793,437 + +0.6 793,437 + -0.0 793,471 - +0.1 793,534 - +0.6 793,534 - -0.5 793,591 + +0.0 793,591 + -1.0 793,591 + -1.6 793,592 - -0.3 793,592 - -0.3 793,637 - -0.4 793,637 - +0.3 793,637 - +0.2 793,637 - -1.2 793,637 - -0.6 793,639 - +0.8 793,639 - +0.5 793,639 - -0.7 793,639 - +0.3 793,639 - +0.0 793,641 - -0.6 793,641 - +0.4 793,641 - -0.8 793,650 - -0.0 793,650 - -0.0 793,650 - +0.2 793,752 + -1.5 793,756 + +0.2 793,761 + +0.0 793,761 + +0.2 793,761 + -0.9 793,763 + +0.8 793,763 + +0.5 793,770 + +0.4 793,785 - +0.2 793,864 + HER17_RS03490 0.12 -0.3 793,864 + HER17_RS03490 0.12 -0.0 793,865 - HER17_RS03490 0.13 -0.4 793,865 - HER17_RS03490 0.13 +1.3 793,865 - HER17_RS03490 0.13 -0.0 793,865 - HER17_RS03490 0.13 -0.1 793,868 + HER17_RS03490 0.13 -1.5 793,868 + HER17_RS03490 0.13 +0.8 793,868 + HER17_RS03490 0.13 +0.4 793,868 + HER17_RS03490 0.13 -0.6 793,868 + HER17_RS03490 0.13 -1.3 793,868 + HER17_RS03490 0.13 +0.9 793,869 - HER17_RS03490 0.13 -0.0 793,869 - HER17_RS03490 0.13 -1.1 793,869 - HER17_RS03490 0.13 +0.0 793,906 + HER17_RS03490 0.17 +0.3 793,906 + HER17_RS03490 0.17 -0.0 793,907 - HER17_RS03490 0.17 +1.2 793,969 - HER17_RS03490 0.24 +1.2 794,025 + HER17_RS03490 0.30 +0.1 794,026 - HER17_RS03490 0.30 -0.9 794,026 - HER17_RS03490 0.30 -0.7 794,169 + HER17_RS03490 0.46 -0.3 794,169 + HER17_RS03490 0.46 +0.4 794,169 + HER17_RS03490 0.46 -0.4 794,170 - HER17_RS03490 0.46 -0.4 794,170 - HER17_RS03490 0.46 -1.0 794,170 - HER17_RS03490 0.46 -0.5 794,170 - HER17_RS03490 0.46 +0.3 794,170 - HER17_RS03490 0.46 -1.7 794,173 + HER17_RS03490 0.46 +0.2 794,173 + HER17_RS03490 0.46 +0.1 794,174 - HER17_RS03490 0.47 +0.4 794,174 - HER17_RS03490 0.47 -0.4 794,174 - HER17_RS03490 0.47 +0.5 794,174 - HER17_RS03490 0.47 +0.3 794,364 - HER17_RS03490 0.67 +0.4 794,377 - HER17_RS03490 0.69 +0.3 794,406 + HER17_RS03490 0.72 -0.4 794,459 + HER17_RS03490 0.78 +0.0 794,460 - HER17_RS03490 0.78 -0.6 794,543 + HER17_RS03490 0.87 -0.7 794,544 - HER17_RS03490 0.87 +0.1 794,598 + -0.3 794,599 - +0.4 794,599 - -0.2 794,620 + +0.4 794,620 + +0.2 794,621 - -0.2 794,621 - -0.1 794,621 - +0.1 794,634 - -0.2 794,684 + +0.6 794,685 - -0.4 794,850 - HER17_RS03495 0.35 +0.9 795,104 + HER17_RS03495 0.81 -0.5 795,286 + -0.0 795,286 + -0.2 795,287 - -0.9 795,317 - +1.1 795,394 + HER17_RS03500 0.15 -1.4 795,394 + HER17_RS03500 0.15 +0.4 795,394 + HER17_RS03500 0.15 -0.2 795,395 - HER17_RS03500 0.15 +0.0 795,395 - HER17_RS03500 0.15 -0.1 795,452 + HER17_RS03500 0.19 -0.1 795,452 + HER17_RS03500 0.19 +0.9 795,453 - HER17_RS03500 0.19 +0.3 795,453 - HER17_RS03500 0.19 +0.1 795,453 - HER17_RS03500 0.19 -0.5 795,626 + HER17_RS03500 0.32 +0.2 795,626 + HER17_RS03500 0.32 +0.7 795,626 + HER17_RS03500 0.32 -0.0 795,627 - HER17_RS03500 0.32 +0.6
Or see this region's nucleotide sequence