Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03380 and HER17_RS03385 are separated by 22 nucleotides HER17_RS03385 and HER17_RS03390 are separated by 318 nucleotides HER17_RS03390 and HER17_RS03395 are separated by 56 nucleotides
HER17_RS03380: HER17_RS03380 - PTS sugar transporter subunit IIB, at 769,824 to 770,111
_RS03380
HER17_RS03385: HER17_RS03385 - PTS sugar transporter subunit IIA, at 770,134 to 770,577
_RS03385
HER17_RS03390: HER17_RS03390 - LacI family DNA-binding transcriptional regulator, at 770,896 to 772,086
_RS03390
HER17_RS03395: HER17_RS03395 - ABC transporter substrate-binding protein, at 772,143 to 773,204
_RS03395
Position (kb) 770
771
772
773 Strain fitness (log2 ratio) -2
-1
0
1 at 769.956 kb on - strand, within HER17_RS03380 at 769.995 kb on + strand, within HER17_RS03380 at 769.996 kb on - strand, within HER17_RS03380 at 769.996 kb on - strand, within HER17_RS03380 at 770.048 kb on + strand, within HER17_RS03380 at 770.076 kb on - strand, within HER17_RS03380 at 770.094 kb on + strand at 770.102 kb on + strand at 770.135 kb on + strand at 770.135 kb on + strand at 770.135 kb on + strand at 770.136 kb on - strand at 770.148 kb on + strand at 770.167 kb on + strand at 770.167 kb on + strand at 770.167 kb on + strand at 770.167 kb on + strand at 770.167 kb on + strand at 770.167 kb on + strand at 770.168 kb on - strand at 770.168 kb on - strand at 770.168 kb on - strand at 770.168 kb on - strand at 770.185 kb on + strand, within HER17_RS03385 at 770.235 kb on + strand, within HER17_RS03385 at 770.236 kb on - strand, within HER17_RS03385 at 770.236 kb on - strand, within HER17_RS03385 at 770.238 kb on + strand, within HER17_RS03385 at 770.250 kb on + strand, within HER17_RS03385 at 770.250 kb on + strand, within HER17_RS03385 at 770.281 kb on + strand, within HER17_RS03385 at 770.281 kb on + strand, within HER17_RS03385 at 770.282 kb on - strand, within HER17_RS03385 at 770.282 kb on - strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.411 kb on + strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.412 kb on - strand, within HER17_RS03385 at 770.414 kb on + strand, within HER17_RS03385 at 770.414 kb on + strand, within HER17_RS03385 at 770.414 kb on + strand, within HER17_RS03385 at 770.415 kb on - strand, within HER17_RS03385 at 770.441 kb on + strand, within HER17_RS03385 at 770.442 kb on - strand, within HER17_RS03385 at 770.442 kb on - strand, within HER17_RS03385 at 770.456 kb on + strand, within HER17_RS03385 at 770.456 kb on + strand, within HER17_RS03385 at 770.456 kb on + strand, within HER17_RS03385 at 770.457 kb on - strand, within HER17_RS03385 at 770.457 kb on - strand, within HER17_RS03385 at 770.457 kb on - strand, within HER17_RS03385 at 770.493 kb on + strand, within HER17_RS03385 at 770.493 kb on + strand, within HER17_RS03385 at 770.579 kb on - strand at 770.611 kb on + strand at 770.612 kb on - strand at 770.695 kb on + strand at 770.695 kb on + strand at 770.695 kb on + strand at 770.714 kb on - strand at 770.714 kb on - strand at 770.714 kb on - strand at 770.744 kb on + strand at 770.744 kb on + strand at 770.745 kb on - strand at 770.745 kb on - strand at 770.745 kb on - strand at 770.745 kb on - strand at 770.745 kb on - strand at 770.745 kb on - strand at 770.838 kb on - strand at 770.838 kb on - strand at 770.901 kb on + strand at 770.902 kb on - strand at 770.902 kb on - strand at 770.930 kb on + strand at 770.930 kb on + strand at 770.957 kb on + strand at 771.108 kb on - strand, within HER17_RS03390 at 771.229 kb on + strand, within HER17_RS03390 at 771.230 kb on - strand, within HER17_RS03390 at 771.230 kb on - strand, within HER17_RS03390 at 771.233 kb on + strand, within HER17_RS03390 at 771.234 kb on - strand, within HER17_RS03390 at 771.234 kb on - strand, within HER17_RS03390 at 771.403 kb on - strand, within HER17_RS03390 at 771.561 kb on + strand, within HER17_RS03390 at 771.612 kb on - strand, within HER17_RS03390 at 771.637 kb on + strand, within HER17_RS03390 at 771.637 kb on + strand, within HER17_RS03390 at 771.638 kb on - strand, within HER17_RS03390 at 771.638 kb on - strand, within HER17_RS03390 at 771.638 kb on - strand, within HER17_RS03390 at 771.639 kb on + strand, within HER17_RS03390 at 771.640 kb on - strand, within HER17_RS03390 at 771.651 kb on + strand, within HER17_RS03390 at 771.651 kb on + strand, within HER17_RS03390 at 771.712 kb on + strand, within HER17_RS03390 at 771.736 kb on - strand, within HER17_RS03390 at 771.736 kb on - strand, within HER17_RS03390 at 771.772 kb on + strand, within HER17_RS03390 at 771.791 kb on + strand, within HER17_RS03390 at 771.792 kb on - strand, within HER17_RS03390 at 771.820 kb on - strand, within HER17_RS03390 at 771.820 kb on - strand, within HER17_RS03390 at 771.825 kb on + strand, within HER17_RS03390 at 771.826 kb on - strand, within HER17_RS03390 at 772.084 kb on + strand at 772.085 kb on - strand at 772.120 kb on + strand at 772.121 kb on - strand at 772.121 kb on - strand at 772.144 kb on + strand at 772.144 kb on + strand at 772.145 kb on - strand at 772.145 kb on - strand at 772.166 kb on + strand at 772.167 kb on - strand at 772.167 kb on - strand at 772.417 kb on + strand, within HER17_RS03395 at 772.511 kb on + strand, within HER17_RS03395 at 772.511 kb on + strand, within HER17_RS03395 at 772.512 kb on - strand, within HER17_RS03395 at 772.520 kb on + strand, within HER17_RS03395 at 772.527 kb on - strand, within HER17_RS03395 at 772.527 kb on - strand, within HER17_RS03395 at 772.527 kb on - strand, within HER17_RS03395 at 772.640 kb on + strand, within HER17_RS03395 at 772.654 kb on + strand, within HER17_RS03395 at 772.654 kb on + strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.661 kb on + strand, within HER17_RS03395 at 772.662 kb on - strand, within HER17_RS03395 at 772.752 kb on + strand, within HER17_RS03395 at 772.752 kb on + strand, within HER17_RS03395 at 772.753 kb on - strand, within HER17_RS03395 at 772.784 kb on + strand, within HER17_RS03395 at 772.784 kb on + strand, within HER17_RS03395 at 772.785 kb on - strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.796 kb on - strand, within HER17_RS03395 at 772.808 kb on + strand, within HER17_RS03395 at 772.809 kb on - strand, within HER17_RS03395 at 772.809 kb on - strand, within HER17_RS03395 at 772.830 kb on + strand, within HER17_RS03395 at 772.831 kb on - strand, within HER17_RS03395 at 772.950 kb on + strand, within HER17_RS03395 at 772.951 kb on - strand, within HER17_RS03395 at 772.951 kb on - strand, within HER17_RS03395 at 772.954 kb on + strand, within HER17_RS03395
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 769,956 - HER17_RS03380 0.46 +1.0 769,995 + HER17_RS03380 0.59 -0.4 769,996 - HER17_RS03380 0.60 +0.6 769,996 - HER17_RS03380 0.60 -1.9 770,048 + HER17_RS03380 0.78 -0.5 770,076 - HER17_RS03380 0.88 +0.0 770,094 + -1.5 770,102 + +0.1 770,135 + -0.5 770,135 + -0.2 770,135 + +0.0 770,136 - +1.2 770,148 + +1.0 770,167 + +0.9 770,167 + +0.5 770,167 + +1.5 770,167 + +0.7 770,167 + -0.4 770,167 + -0.3 770,168 - +0.8 770,168 - +0.4 770,168 - +0.6 770,168 - +0.4 770,185 + HER17_RS03385 0.11 -0.2 770,235 + HER17_RS03385 0.23 -0.1 770,236 - HER17_RS03385 0.23 +0.3 770,236 - HER17_RS03385 0.23 -0.9 770,238 + HER17_RS03385 0.23 -0.3 770,250 + HER17_RS03385 0.26 +0.4 770,250 + HER17_RS03385 0.26 +0.2 770,281 + HER17_RS03385 0.33 -0.8 770,281 + HER17_RS03385 0.33 -0.2 770,282 - HER17_RS03385 0.33 -0.4 770,282 - HER17_RS03385 0.33 -0.6 770,411 + HER17_RS03385 0.62 -0.8 770,411 + HER17_RS03385 0.62 -0.9 770,411 + HER17_RS03385 0.62 -0.4 770,411 + HER17_RS03385 0.62 +0.5 770,411 + HER17_RS03385 0.62 +0.7 770,411 + HER17_RS03385 0.62 +0.7 770,411 + HER17_RS03385 0.62 -0.4 770,411 + HER17_RS03385 0.62 +0.1 770,412 - HER17_RS03385 0.63 +1.5 770,412 - HER17_RS03385 0.63 +0.3 770,412 - HER17_RS03385 0.63 +0.5 770,412 - HER17_RS03385 0.63 +0.2 770,412 - HER17_RS03385 0.63 +0.1 770,412 - HER17_RS03385 0.63 +1.0 770,412 - HER17_RS03385 0.63 -0.4 770,412 - HER17_RS03385 0.63 -0.4 770,412 - HER17_RS03385 0.63 +0.3 770,414 + HER17_RS03385 0.63 -0.1 770,414 + HER17_RS03385 0.63 -0.8 770,414 + HER17_RS03385 0.63 -0.1 770,415 - HER17_RS03385 0.63 +0.0 770,441 + HER17_RS03385 0.69 -0.2 770,442 - HER17_RS03385 0.69 +0.6 770,442 - HER17_RS03385 0.69 -1.1 770,456 + HER17_RS03385 0.73 +0.2 770,456 + HER17_RS03385 0.73 -0.5 770,456 + HER17_RS03385 0.73 +0.5 770,457 - HER17_RS03385 0.73 +0.2 770,457 - HER17_RS03385 0.73 +0.4 770,457 - HER17_RS03385 0.73 +0.7 770,493 + HER17_RS03385 0.81 +0.4 770,493 + HER17_RS03385 0.81 -0.1 770,579 - +0.1 770,611 + +0.1 770,612 - +0.4 770,695 + -0.5 770,695 + +0.3 770,695 + +0.7 770,714 - +0.6 770,714 - -0.4 770,714 - -0.2 770,744 + +0.2 770,744 + -0.2 770,745 - -1.7 770,745 - +0.1 770,745 - +0.2 770,745 - -0.3 770,745 - +0.2 770,745 - -0.4 770,838 - +1.0 770,838 - +0.3 770,901 + -0.2 770,902 - -0.7 770,902 - -0.4 770,930 + +0.0 770,930 + -1.1 770,957 + -0.5 771,108 - HER17_RS03390 0.18 +0.3 771,229 + HER17_RS03390 0.28 +0.2 771,230 - HER17_RS03390 0.28 -0.1 771,230 - HER17_RS03390 0.28 -0.4 771,233 + HER17_RS03390 0.28 -0.4 771,234 - HER17_RS03390 0.28 -0.1 771,234 - HER17_RS03390 0.28 -1.6 771,403 - HER17_RS03390 0.43 -1.4 771,561 + HER17_RS03390 0.56 -0.7 771,612 - HER17_RS03390 0.60 +0.1 771,637 + HER17_RS03390 0.62 -0.5 771,637 + HER17_RS03390 0.62 -0.6 771,638 - HER17_RS03390 0.62 -0.6 771,638 - HER17_RS03390 0.62 -1.2 771,638 - HER17_RS03390 0.62 +1.1 771,639 + HER17_RS03390 0.62 -0.1 771,640 - HER17_RS03390 0.62 -0.2 771,651 + HER17_RS03390 0.63 -0.8 771,651 + HER17_RS03390 0.63 +0.3 771,712 + HER17_RS03390 0.69 -0.5 771,736 - HER17_RS03390 0.71 -0.5 771,736 - HER17_RS03390 0.71 -1.3 771,772 + HER17_RS03390 0.74 +0.2 771,791 + HER17_RS03390 0.75 +0.4 771,792 - HER17_RS03390 0.75 -0.2 771,820 - HER17_RS03390 0.78 -0.9 771,820 - HER17_RS03390 0.78 +0.7 771,825 + HER17_RS03390 0.78 +1.3 771,826 - HER17_RS03390 0.78 -0.5 772,084 + -0.1 772,085 - +1.3 772,120 + -0.1 772,121 - -0.3 772,121 - -0.1 772,144 + -0.3 772,144 + -0.5 772,145 - -0.5 772,145 - +0.2 772,166 + +0.0 772,167 - +0.4 772,167 - -0.1 772,417 + HER17_RS03395 0.26 -1.1 772,511 + HER17_RS03395 0.35 +0.3 772,511 + HER17_RS03395 0.35 -1.2 772,512 - HER17_RS03395 0.35 +0.0 772,520 + HER17_RS03395 0.35 -0.4 772,527 - HER17_RS03395 0.36 -0.4 772,527 - HER17_RS03395 0.36 +0.4 772,527 - HER17_RS03395 0.36 +0.1 772,640 + HER17_RS03395 0.47 +0.6 772,654 + HER17_RS03395 0.48 +0.7 772,654 + HER17_RS03395 0.48 +0.5 772,655 - HER17_RS03395 0.48 +0.4 772,655 - HER17_RS03395 0.48 +0.7 772,655 - HER17_RS03395 0.48 -0.2 772,661 + HER17_RS03395 0.49 -0.2 772,662 - HER17_RS03395 0.49 +0.3 772,752 + HER17_RS03395 0.57 -1.9 772,752 + HER17_RS03395 0.57 -0.4 772,753 - HER17_RS03395 0.57 +0.1 772,784 + HER17_RS03395 0.60 +0.9 772,784 + HER17_RS03395 0.60 +0.5 772,785 - HER17_RS03395 0.60 -0.9 772,795 + HER17_RS03395 0.61 -0.7 772,795 + HER17_RS03395 0.61 -0.0 772,795 + HER17_RS03395 0.61 -1.1 772,795 + HER17_RS03395 0.61 +0.6 772,796 - HER17_RS03395 0.61 +0.5 772,808 + HER17_RS03395 0.63 +1.6 772,809 - HER17_RS03395 0.63 +0.8 772,809 - HER17_RS03395 0.63 -0.4 772,830 + HER17_RS03395 0.65 +0.0 772,831 - HER17_RS03395 0.65 -0.3 772,950 + HER17_RS03395 0.76 -0.5 772,951 - HER17_RS03395 0.76 -0.1 772,951 - HER17_RS03395 0.76 -0.5 772,954 + HER17_RS03395 0.76 +0.8
Or see this region's nucleotide sequence