Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02935 and HER17_RS02940 are separated by 111 nucleotides HER17_RS02940 and HER17_RS02945 are separated by 142 nucleotides HER17_RS02945 and HER17_RS02950 are separated by 40 nucleotides
HER17_RS02935: HER17_RS02935 - LysR family transcriptional regulator, at 659,548 to 660,453
_RS02935
HER17_RS02940: HER17_RS02940 - DMT family transporter, at 660,565 to 661,089
_RS02940
HER17_RS02945: HER17_RS02945 - hypothetical protein, at 661,232 to 661,426
_RS02945
HER17_RS02950: HER17_RS02950 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 661,467 to 662,324
_RS02950
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 660.007 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.171 kb on + strand, within HER17_RS02935 at 660.171 kb on + strand, within HER17_RS02935 at 660.171 kb on + strand, within HER17_RS02935 at 660.172 kb on - strand, within HER17_RS02935 at 660.172 kb on - strand, within HER17_RS02935 at 660.172 kb on - strand, within HER17_RS02935 at 660.172 kb on - strand, within HER17_RS02935 at 660.172 kb on - strand, within HER17_RS02935 at 660.319 kb on + strand, within HER17_RS02935 at 660.319 kb on + strand, within HER17_RS02935 at 660.320 kb on - strand, within HER17_RS02935 at 660.320 kb on - strand, within HER17_RS02935 at 660.436 kb on - strand at 660.443 kb on - strand at 660.471 kb on + strand at 660.528 kb on + strand at 660.528 kb on + strand at 660.528 kb on + strand at 660.528 kb on + strand at 660.528 kb on + strand at 660.528 kb on + strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.544 kb on + strand at 660.613 kb on - strand at 660.620 kb on + strand, within HER17_RS02940 at 660.621 kb on - strand, within HER17_RS02940 at 660.621 kb on - strand, within HER17_RS02940 at 660.621 kb on - strand, within HER17_RS02940 at 660.621 kb on - strand, within HER17_RS02940 at 660.708 kb on - strand, within HER17_RS02940 at 660.719 kb on + strand, within HER17_RS02940 at 660.720 kb on - strand, within HER17_RS02940 at 660.720 kb on - strand, within HER17_RS02940 at 660.720 kb on - strand, within HER17_RS02940 at 660.720 kb on - strand, within HER17_RS02940 at 660.720 kb on - strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.724 kb on - strand, within HER17_RS02940 at 660.724 kb on - strand, within HER17_RS02940 at 660.724 kb on - strand, within HER17_RS02940 at 660.788 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.836 kb on - strand, within HER17_RS02940 at 660.836 kb on - strand, within HER17_RS02940 at 660.836 kb on - strand, within HER17_RS02940 at 660.837 kb on + strand, within HER17_RS02940 at 660.837 kb on + strand, within HER17_RS02940 at 660.838 kb on - strand, within HER17_RS02940 at 660.838 kb on - strand, within HER17_RS02940 at 660.885 kb on + strand, within HER17_RS02940 at 660.886 kb on - strand, within HER17_RS02940 at 660.984 kb on - strand, within HER17_RS02940 at 661.027 kb on + strand, within HER17_RS02940 at 661.027 kb on + strand, within HER17_RS02940 at 661.028 kb on - strand, within HER17_RS02940 at 661.028 kb on - strand, within HER17_RS02940 at 661.071 kb on + strand at 661.072 kb on - strand at 661.072 kb on - strand at 661.087 kb on + strand at 661.087 kb on + strand at 661.088 kb on - strand at 661.096 kb on + strand at 661.096 kb on + strand at 661.096 kb on + strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.140 kb on + strand at 661.140 kb on + strand at 661.140 kb on + strand at 661.141 kb on - strand at 661.141 kb on - strand at 661.141 kb on - strand at 661.141 kb on - strand at 661.149 kb on + strand at 661.150 kb on - strand at 661.150 kb on - strand at 661.150 kb on - strand at 661.211 kb on - strand at 661.211 kb on - strand at 661.211 kb on - strand at 661.213 kb on + strand at 661.213 kb on + strand at 661.213 kb on + strand at 661.213 kb on + strand at 661.213 kb on + strand at 661.214 kb on - strand at 661.214 kb on - strand at 661.214 kb on - strand at 661.217 kb on + strand at 661.217 kb on + strand at 661.218 kb on - strand at 661.218 kb on - strand at 661.227 kb on + strand at 661.228 kb on - strand at 661.241 kb on - strand at 661.308 kb on + strand, within HER17_RS02945 at 661.309 kb on - strand, within HER17_RS02945 at 661.387 kb on + strand, within HER17_RS02945 at 661.388 kb on - strand, within HER17_RS02945 at 661.388 kb on - strand, within HER17_RS02945 at 661.422 kb on + strand at 661.422 kb on + strand at 661.423 kb on - strand at 661.423 kb on - strand at 661.423 kb on - strand at 661.445 kb on + strand at 661.455 kb on - strand at 661.537 kb on + strand at 661.538 kb on - strand at 661.593 kb on - strand, within HER17_RS02950 at 661.596 kb on + strand, within HER17_RS02950 at 661.604 kb on - strand, within HER17_RS02950 at 661.658 kb on + strand, within HER17_RS02950 at 661.663 kb on + strand, within HER17_RS02950 at 661.664 kb on - strand, within HER17_RS02950 at 661.664 kb on - strand, within HER17_RS02950 at 661.705 kb on - strand, within HER17_RS02950 at 661.745 kb on + strand, within HER17_RS02950 at 661.799 kb on + strand, within HER17_RS02950 at 661.850 kb on + strand, within HER17_RS02950 at 661.851 kb on - strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.882 kb on + strand, within HER17_RS02950 at 662.020 kb on - strand, within HER17_RS02950 at 662.084 kb on + strand, within HER17_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 660,007 + HER17_RS02935 0.51 -0.4 660,097 + HER17_RS02935 0.61 -0.3 660,097 + HER17_RS02935 0.61 +0.1 660,097 + HER17_RS02935 0.61 -0.5 660,097 + HER17_RS02935 0.61 -0.8 660,097 + HER17_RS02935 0.61 +0.5 660,097 + HER17_RS02935 0.61 +0.5 660,097 + HER17_RS02935 0.61 +0.7 660,097 + HER17_RS02935 0.61 -0.2 660,098 - HER17_RS02935 0.61 -1.7 660,098 - HER17_RS02935 0.61 -0.2 660,098 - HER17_RS02935 0.61 +0.1 660,098 - HER17_RS02935 0.61 +0.5 660,098 - HER17_RS02935 0.61 +0.6 660,098 - HER17_RS02935 0.61 +0.1 660,098 - HER17_RS02935 0.61 -1.4 660,098 - HER17_RS02935 0.61 +0.8 660,171 + HER17_RS02935 0.69 +0.5 660,171 + HER17_RS02935 0.69 -0.3 660,171 + HER17_RS02935 0.69 +0.2 660,172 - HER17_RS02935 0.69 +0.6 660,172 - HER17_RS02935 0.69 +0.3 660,172 - HER17_RS02935 0.69 +0.5 660,172 - HER17_RS02935 0.69 -0.3 660,172 - HER17_RS02935 0.69 +0.7 660,319 + HER17_RS02935 0.85 -0.3 660,319 + HER17_RS02935 0.85 -0.1 660,320 - HER17_RS02935 0.85 +0.6 660,320 - HER17_RS02935 0.85 -0.2 660,436 - -0.3 660,443 - +0.0 660,471 + -0.1 660,528 + +0.4 660,528 + +0.2 660,528 + +0.2 660,528 + +0.8 660,528 + +0.2 660,528 + +0.3 660,529 - -0.4 660,529 - -0.8 660,529 - -0.7 660,529 - +0.4 660,529 - +0.1 660,529 - -0.1 660,529 - +2.3 660,529 - +1.5 660,529 - +0.2 660,544 + -0.1 660,613 - -0.1 660,620 + HER17_RS02940 0.10 -0.3 660,621 - HER17_RS02940 0.11 -0.8 660,621 - HER17_RS02940 0.11 +0.2 660,621 - HER17_RS02940 0.11 +0.9 660,621 - HER17_RS02940 0.11 +0.9 660,708 - HER17_RS02940 0.27 +0.3 660,719 + HER17_RS02940 0.29 +0.1 660,720 - HER17_RS02940 0.30 +0.3 660,720 - HER17_RS02940 0.30 -0.7 660,720 - HER17_RS02940 0.30 +0.3 660,720 - HER17_RS02940 0.30 -0.2 660,720 - HER17_RS02940 0.30 +0.3 660,723 + HER17_RS02940 0.30 -0.7 660,723 + HER17_RS02940 0.30 -0.3 660,723 + HER17_RS02940 0.30 +0.1 660,723 + HER17_RS02940 0.30 +0.2 660,723 + HER17_RS02940 0.30 +0.0 660,723 + HER17_RS02940 0.30 +0.0 660,724 - HER17_RS02940 0.30 -0.6 660,724 - HER17_RS02940 0.30 +0.6 660,724 - HER17_RS02940 0.30 -0.1 660,788 + HER17_RS02940 0.42 +0.3 660,835 + HER17_RS02940 0.51 -1.0 660,835 + HER17_RS02940 0.51 +0.1 660,835 + HER17_RS02940 0.51 +1.0 660,835 + HER17_RS02940 0.51 -0.9 660,835 + HER17_RS02940 0.51 -0.1 660,835 + HER17_RS02940 0.51 -0.5 660,836 - HER17_RS02940 0.52 -1.4 660,836 - HER17_RS02940 0.52 +0.1 660,836 - HER17_RS02940 0.52 +1.3 660,837 + HER17_RS02940 0.52 -0.3 660,837 + HER17_RS02940 0.52 -0.0 660,838 - HER17_RS02940 0.52 +0.1 660,838 - HER17_RS02940 0.52 -0.9 660,885 + HER17_RS02940 0.61 -0.0 660,886 - HER17_RS02940 0.61 +0.0 660,984 - HER17_RS02940 0.80 +0.5 661,027 + HER17_RS02940 0.88 -0.5 661,027 + HER17_RS02940 0.88 -1.0 661,028 - HER17_RS02940 0.88 -0.2 661,028 - HER17_RS02940 0.88 +0.5 661,071 + -0.6 661,072 - -0.7 661,072 - +0.6 661,087 + +0.9 661,087 + -0.7 661,088 - +2.1 661,096 + +0.1 661,096 + +0.5 661,096 + -0.6 661,097 - -0.9 661,097 - +0.5 661,097 - +0.4 661,097 - +0.3 661,097 - +0.4 661,097 - +0.3 661,097 - -0.7 661,140 + -0.6 661,140 + +0.3 661,140 + +0.1 661,141 - +0.6 661,141 - +0.1 661,141 - -0.9 661,141 - +0.6 661,149 + +0.1 661,150 - -0.0 661,150 - +0.9 661,150 - +0.3 661,211 - -0.0 661,211 - +0.0 661,211 - -0.6 661,213 + -0.1 661,213 + +0.1 661,213 + -0.3 661,213 + +1.7 661,213 + +0.3 661,214 - -0.2 661,214 - +1.2 661,214 - +0.3 661,217 + -0.8 661,217 + +0.3 661,218 - +0.1 661,218 - -0.6 661,227 + +0.2 661,228 - -0.5 661,241 - -0.6 661,308 + HER17_RS02945 0.39 -0.2 661,309 - HER17_RS02945 0.39 +0.5 661,387 + HER17_RS02945 0.79 +0.4 661,388 - HER17_RS02945 0.80 -1.4 661,388 - HER17_RS02945 0.80 -0.5 661,422 + +1.1 661,422 + +0.3 661,423 - +1.1 661,423 - +0.4 661,423 - +1.1 661,445 + +0.1 661,455 - +1.8 661,537 + +0.5 661,538 - +0.3 661,593 - HER17_RS02950 0.15 +0.3 661,596 + HER17_RS02950 0.15 -0.3 661,604 - HER17_RS02950 0.16 +1.6 661,658 + HER17_RS02950 0.22 +0.5 661,663 + HER17_RS02950 0.23 +0.3 661,664 - HER17_RS02950 0.23 -0.9 661,664 - HER17_RS02950 0.23 +1.1 661,705 - HER17_RS02950 0.28 -0.3 661,745 + HER17_RS02950 0.32 -2.5 661,799 + HER17_RS02950 0.39 -0.1 661,850 + HER17_RS02950 0.45 +0.6 661,851 - HER17_RS02950 0.45 -0.0 661,858 + HER17_RS02950 0.46 -0.7 661,858 + HER17_RS02950 0.46 +1.1 661,858 + HER17_RS02950 0.46 +0.5 661,858 + HER17_RS02950 0.46 -0.3 661,858 + HER17_RS02950 0.46 +0.9 661,859 - HER17_RS02950 0.46 -0.3 661,859 - HER17_RS02950 0.46 -1.0 661,859 - HER17_RS02950 0.46 +0.4 661,859 - HER17_RS02950 0.46 -0.3 661,859 - HER17_RS02950 0.46 +0.1 661,859 - HER17_RS02950 0.46 -0.3 661,859 - HER17_RS02950 0.46 -0.7 661,859 - HER17_RS02950 0.46 +0.5 661,882 + HER17_RS02950 0.48 -0.9 662,020 - HER17_RS02950 0.64 -3.5 662,084 + HER17_RS02950 0.72 -0.3
Or see this region's nucleotide sequence