Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS02300

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS02295 and HER17_RS02300 are separated by 48 nucleotidesHER17_RS02300 and HER17_RS02305 are separated by 272 nucleotides HER17_RS02295: HER17_RS02295 - isocitrate lyase, at 508,740 to 510,047 _RS02295 HER17_RS02300: HER17_RS02300 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 510,096 to 511,871 _RS02300 HER17_RS02305: HER17_RS02305 - glyoxylate bypass operon transcriptional repressor IclR, at 512,144 to 512,974 _RS02305 Position (kb) 510 511 512Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 509.174 kb on + strand, within HER17_RS02295at 509.174 kb on + strand, within HER17_RS02295at 509.175 kb on - strand, within HER17_RS02295at 509.181 kb on + strand, within HER17_RS02295at 509.181 kb on + strand, within HER17_RS02295at 509.183 kb on + strand, within HER17_RS02295at 509.183 kb on + strand, within HER17_RS02295at 509.184 kb on - strand, within HER17_RS02295at 509.184 kb on - strand, within HER17_RS02295at 509.240 kb on + strand, within HER17_RS02295at 509.241 kb on - strand, within HER17_RS02295at 509.347 kb on + strand, within HER17_RS02295at 509.347 kb on + strand, within HER17_RS02295at 509.425 kb on + strand, within HER17_RS02295at 509.426 kb on - strand, within HER17_RS02295at 509.484 kb on + strand, within HER17_RS02295at 509.484 kb on + strand, within HER17_RS02295at 509.484 kb on + strand, within HER17_RS02295at 509.485 kb on - strand, within HER17_RS02295at 509.534 kb on + strand, within HER17_RS02295at 509.577 kb on + strand, within HER17_RS02295at 509.577 kb on + strand, within HER17_RS02295at 509.577 kb on + strand, within HER17_RS02295at 509.578 kb on - strand, within HER17_RS02295at 509.586 kb on + strand, within HER17_RS02295at 509.626 kb on + strand, within HER17_RS02295at 509.688 kb on + strand, within HER17_RS02295at 509.688 kb on + strand, within HER17_RS02295at 509.689 kb on - strand, within HER17_RS02295at 509.709 kb on - strand, within HER17_RS02295at 509.709 kb on - strand, within HER17_RS02295at 509.775 kb on + strand, within HER17_RS02295at 509.848 kb on - strand, within HER17_RS02295at 509.913 kb on - strand, within HER17_RS02295at 509.922 kb on + strandat 509.924 kb on + strandat 509.962 kb on - strandat 509.969 kb on + strandat 510.156 kb on + strandat 510.245 kb on + strandat 510.253 kb on + strandat 510.253 kb on + strandat 510.253 kb on + strandat 510.254 kb on - strandat 510.254 kb on - strandat 510.255 kb on + strandat 510.255 kb on + strandat 510.256 kb on - strandat 510.256 kb on - strandat 510.296 kb on + strand, within HER17_RS02300at 510.296 kb on + strand, within HER17_RS02300at 510.296 kb on + strand, within HER17_RS02300at 510.297 kb on - strand, within HER17_RS02300at 510.297 kb on - strand, within HER17_RS02300at 510.347 kb on + strand, within HER17_RS02300at 510.347 kb on + strand, within HER17_RS02300at 510.347 kb on + strand, within HER17_RS02300at 510.347 kb on + strand, within HER17_RS02300at 510.348 kb on - strand, within HER17_RS02300at 510.348 kb on - strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.351 kb on + strand, within HER17_RS02300at 510.352 kb on - strand, within HER17_RS02300at 510.352 kb on - strand, within HER17_RS02300at 510.352 kb on - strand, within HER17_RS02300at 510.362 kb on - strand, within HER17_RS02300at 510.428 kb on + strand, within HER17_RS02300at 510.618 kb on + strand, within HER17_RS02300at 510.618 kb on + strand, within HER17_RS02300at 510.619 kb on - strand, within HER17_RS02300at 510.619 kb on - strand, within HER17_RS02300at 510.619 kb on - strand, within HER17_RS02300at 510.621 kb on - strand, within HER17_RS02300at 510.630 kb on + strand, within HER17_RS02300at 510.630 kb on + strand, within HER17_RS02300at 510.630 kb on + strand, within HER17_RS02300at 510.634 kb on + strand, within HER17_RS02300at 510.635 kb on - strand, within HER17_RS02300at 510.677 kb on - strand, within HER17_RS02300at 510.797 kb on - strand, within HER17_RS02300at 510.797 kb on - strand, within HER17_RS02300at 510.797 kb on - strand, within HER17_RS02300at 510.800 kb on + strand, within HER17_RS02300at 510.807 kb on - strand, within HER17_RS02300at 510.807 kb on - strand, within HER17_RS02300at 510.873 kb on + strand, within HER17_RS02300at 510.873 kb on + strand, within HER17_RS02300at 510.873 kb on + strand, within HER17_RS02300at 510.874 kb on - strand, within HER17_RS02300at 510.874 kb on - strand, within HER17_RS02300at 510.874 kb on - strand, within HER17_RS02300at 510.974 kb on + strand, within HER17_RS02300at 510.974 kb on + strand, within HER17_RS02300at 510.975 kb on - strand, within HER17_RS02300at 510.975 kb on - strand, within HER17_RS02300at 510.975 kb on - strand, within HER17_RS02300at 510.985 kb on - strand, within HER17_RS02300at 511.005 kb on + strand, within HER17_RS02300at 511.006 kb on - strand, within HER17_RS02300at 511.031 kb on + strand, within HER17_RS02300at 511.055 kb on + strand, within HER17_RS02300at 511.055 kb on + strand, within HER17_RS02300at 511.056 kb on - strand, within HER17_RS02300at 511.073 kb on + strand, within HER17_RS02300at 511.074 kb on - strand, within HER17_RS02300at 511.164 kb on + strand, within HER17_RS02300at 511.165 kb on - strand, within HER17_RS02300at 511.165 kb on - strand, within HER17_RS02300at 511.165 kb on - strand, within HER17_RS02300at 511.219 kb on - strand, within HER17_RS02300at 511.335 kb on + strand, within HER17_RS02300at 511.335 kb on + strand, within HER17_RS02300at 511.335 kb on + strand, within HER17_RS02300at 511.335 kb on + strand, within HER17_RS02300at 511.336 kb on - strand, within HER17_RS02300at 511.336 kb on - strand, within HER17_RS02300at 511.336 kb on - strand, within HER17_RS02300at 511.337 kb on + strand, within HER17_RS02300at 511.368 kb on + strand, within HER17_RS02300at 511.369 kb on - strand, within HER17_RS02300at 511.369 kb on - strand, within HER17_RS02300at 511.471 kb on + strand, within HER17_RS02300at 511.472 kb on - strand, within HER17_RS02300at 511.515 kb on + strand, within HER17_RS02300at 511.515 kb on + strand, within HER17_RS02300at 511.516 kb on - strand, within HER17_RS02300at 511.516 kb on - strand, within HER17_RS02300at 511.521 kb on + strand, within HER17_RS02300at 511.521 kb on + strand, within HER17_RS02300at 511.521 kb on + strand, within HER17_RS02300at 511.522 kb on - strand, within HER17_RS02300at 511.522 kb on - strand, within HER17_RS02300at 511.536 kb on + strand, within HER17_RS02300at 511.536 kb on + strand, within HER17_RS02300at 511.536 kb on + strand, within HER17_RS02300at 511.536 kb on + strand, within HER17_RS02300at 511.537 kb on - strand, within HER17_RS02300at 511.537 kb on - strand, within HER17_RS02300at 511.537 kb on - strand, within HER17_RS02300at 511.550 kb on + strand, within HER17_RS02300at 511.595 kb on - strand, within HER17_RS02300at 511.611 kb on + strand, within HER17_RS02300at 511.612 kb on - strand, within HER17_RS02300at 511.726 kb on - strandat 511.738 kb on + strandat 511.749 kb on - strandat 511.776 kb on + strandat 511.777 kb on - strandat 511.777 kb on - strandat 511.777 kb on - strandat 511.824 kb on + strandat 511.824 kb on + strandat 511.824 kb on + strandat 511.824 kb on + strandat 511.825 kb on - strandat 511.825 kb on - strandat 511.825 kb on - strandat 511.825 kb on - strandat 511.829 kb on + strandat 511.829 kb on + strandat 511.829 kb on + strandat 511.829 kb on + strandat 511.829 kb on + strandat 511.829 kb on + strandat 511.832 kb on + strandat 511.832 kb on + strandat 511.833 kb on - strandat 511.833 kb on - strandat 512.001 kb on + strandat 512.024 kb on - strandat 512.068 kb on - strandat 512.084 kb on + strandat 512.085 kb on - strandat 512.090 kb on + strandat 512.091 kb on - strandat 512.091 kb on - strandat 512.094 kb on - strandat 512.094 kb on - strandat 512.094 kb on - strandat 512.094 kb on - strandat 512.124 kb on + strandat 512.125 kb on - strandat 512.287 kb on + strand, within HER17_RS02305at 512.287 kb on + strand, within HER17_RS02305at 512.407 kb on + strand, within HER17_RS02305at 512.408 kb on - strand, within HER17_RS02305at 512.408 kb on - strand, within HER17_RS02305at 512.408 kb on - strand, within HER17_RS02305at 512.459 kb on + strand, within HER17_RS02305at 512.459 kb on + strand, within HER17_RS02305at 512.459 kb on + strand, within HER17_RS02305at 512.459 kb on + strand, within HER17_RS02305at 512.545 kb on + strand, within HER17_RS02305at 512.545 kb on + strand, within HER17_RS02305at 512.545 kb on + strand, within HER17_RS02305at 512.545 kb on + strand, within HER17_RS02305at 512.578 kb on + strand, within HER17_RS02305at 512.579 kb on - strand, within HER17_RS02305at 512.579 kb on - strand, within HER17_RS02305at 512.631 kb on - strand, within HER17_RS02305at 512.639 kb on + strand, within HER17_RS02305at 512.639 kb on + strand, within HER17_RS02305at 512.640 kb on - strand, within HER17_RS02305at 512.640 kb on - strand, within HER17_RS02305at 512.640 kb on - strand, within HER17_RS02305at 512.640 kb on - strand, within HER17_RS02305at 512.857 kb on + strand, within HER17_RS02305at 512.858 kb on - strand, within HER17_RS02305at 512.859 kb on + strand, within HER17_RS02305at 512.860 kb on - strand, within HER17_RS02305at 512.860 kb on - strand, within HER17_RS02305at 512.860 kb on - strand, within HER17_RS02305at 512.860 kb on - strand, within HER17_RS02305at 512.860 kb on - strand, within HER17_RS02305at 512.860 kb on - strand, within HER17_RS02305

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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509,174 + HER17_RS02295 0.33 +0.1
509,174 + HER17_RS02295 0.33 +0.0
509,175 - HER17_RS02295 0.33 -1.0
509,181 + HER17_RS02295 0.34 +0.3
509,181 + HER17_RS02295 0.34 +0.1
509,183 + HER17_RS02295 0.34 +0.3
509,183 + HER17_RS02295 0.34 +0.8
509,184 - HER17_RS02295 0.34 +0.0
509,184 - HER17_RS02295 0.34 -1.0
509,240 + HER17_RS02295 0.38 +0.2
509,241 - HER17_RS02295 0.38 -0.2
509,347 + HER17_RS02295 0.46 -0.1
509,347 + HER17_RS02295 0.46 +0.7
509,425 + HER17_RS02295 0.52 -0.2
509,426 - HER17_RS02295 0.52 -0.2
509,484 + HER17_RS02295 0.57 +0.1
509,484 + HER17_RS02295 0.57 -1.0
509,484 + HER17_RS02295 0.57 -1.0
509,485 - HER17_RS02295 0.57 +1.1
509,534 + HER17_RS02295 0.61 +0.3
509,577 + HER17_RS02295 0.64 -0.8
509,577 + HER17_RS02295 0.64 +0.7
509,577 + HER17_RS02295 0.64 -0.1
509,578 - HER17_RS02295 0.64 +0.3
509,586 + HER17_RS02295 0.65 +0.4
509,626 + HER17_RS02295 0.68 -1.4
509,688 + HER17_RS02295 0.72 -0.3
509,688 + HER17_RS02295 0.72 +0.8
509,689 - HER17_RS02295 0.73 -1.6
509,709 - HER17_RS02295 0.74 +0.3
509,709 - HER17_RS02295 0.74 +0.2
509,775 + HER17_RS02295 0.79 +0.4
509,848 - HER17_RS02295 0.85 +1.2
509,913 - HER17_RS02295 0.90 -0.8
509,922 + +0.1
509,924 + +0.2
509,962 - +1.9
509,969 + +0.6
510,156 + +0.5
510,245 + -0.2
510,253 + +0.7
510,253 + -1.5
510,253 + +0.9
510,254 - +0.1
510,254 - +0.4
510,255 + +1.4
510,255 + +0.0
510,256 - +0.5
510,256 - -0.1
510,296 + HER17_RS02300 0.11 -0.0
510,296 + HER17_RS02300 0.11 -0.7
510,296 + HER17_RS02300 0.11 -0.1
510,297 - HER17_RS02300 0.11 +1.7
510,297 - HER17_RS02300 0.11 -0.3
510,347 + HER17_RS02300 0.14 -0.2
510,347 + HER17_RS02300 0.14 -0.2
510,347 + HER17_RS02300 0.14 -0.2
510,347 + HER17_RS02300 0.14 +1.1
510,348 - HER17_RS02300 0.14 -0.5
510,348 - HER17_RS02300 0.14 +0.2
510,351 + HER17_RS02300 0.14 +0.5
510,351 + HER17_RS02300 0.14 -0.0
510,351 + HER17_RS02300 0.14 -0.8
510,351 + HER17_RS02300 0.14 -0.0
510,351 + HER17_RS02300 0.14 +0.4
510,351 + HER17_RS02300 0.14 -0.5
510,351 + HER17_RS02300 0.14 -0.8
510,351 + HER17_RS02300 0.14 +0.5
510,352 - HER17_RS02300 0.14 -2.7
510,352 - HER17_RS02300 0.14 -0.1
510,352 - HER17_RS02300 0.14 +0.1
510,362 - HER17_RS02300 0.15 -1.6
510,428 + HER17_RS02300 0.19 +0.4
510,618 + HER17_RS02300 0.29 -0.9
510,618 + HER17_RS02300 0.29 -0.1
510,619 - HER17_RS02300 0.29 +0.2
510,619 - HER17_RS02300 0.29 -0.5
510,619 - HER17_RS02300 0.29 -0.0
510,621 - HER17_RS02300 0.30 -1.3
510,630 + HER17_RS02300 0.30 +0.1
510,630 + HER17_RS02300 0.30 -0.7
510,630 + HER17_RS02300 0.30 -0.7
510,634 + HER17_RS02300 0.30 +0.0
510,635 - HER17_RS02300 0.30 -0.9
510,677 - HER17_RS02300 0.33 +1.9
510,797 - HER17_RS02300 0.39 +0.9
510,797 - HER17_RS02300 0.39 -0.5
510,797 - HER17_RS02300 0.39 -0.4
510,800 + HER17_RS02300 0.40 +0.3
510,807 - HER17_RS02300 0.40 +0.1
510,807 - HER17_RS02300 0.40 +0.1
510,873 + HER17_RS02300 0.44 -0.4
510,873 + HER17_RS02300 0.44 +1.0
510,873 + HER17_RS02300 0.44 -2.0
510,874 - HER17_RS02300 0.44 -1.2
510,874 - HER17_RS02300 0.44 +1.0
510,874 - HER17_RS02300 0.44 +0.2
510,974 + HER17_RS02300 0.49 -0.3
510,974 + HER17_RS02300 0.49 +0.1
510,975 - HER17_RS02300 0.49 +0.3
510,975 - HER17_RS02300 0.49 +0.3
510,975 - HER17_RS02300 0.49 +0.4
510,985 - HER17_RS02300 0.50 -0.1
511,005 + HER17_RS02300 0.51 +0.5
511,006 - HER17_RS02300 0.51 -0.1
511,031 + HER17_RS02300 0.53 +0.1
511,055 + HER17_RS02300 0.54 +0.1
511,055 + HER17_RS02300 0.54 +1.3
511,056 - HER17_RS02300 0.54 -0.2
511,073 + HER17_RS02300 0.55 -0.1
511,074 - HER17_RS02300 0.55 -0.2
511,164 + HER17_RS02300 0.60 +0.5
511,165 - HER17_RS02300 0.60 +0.0
511,165 - HER17_RS02300 0.60 -0.8
511,165 - HER17_RS02300 0.60 -1.0
511,219 - HER17_RS02300 0.63 -0.3
511,335 + HER17_RS02300 0.70 +0.3
511,335 + HER17_RS02300 0.70 +1.0
511,335 + HER17_RS02300 0.70 -3.1
511,335 + HER17_RS02300 0.70 +0.8
511,336 - HER17_RS02300 0.70 +0.1
511,336 - HER17_RS02300 0.70 +0.5
511,336 - HER17_RS02300 0.70 -0.8
511,337 + HER17_RS02300 0.70 +0.1
511,368 + HER17_RS02300 0.72 +0.5
511,369 - HER17_RS02300 0.72 +0.4
511,369 - HER17_RS02300 0.72 -1.6
511,471 + HER17_RS02300 0.77 +0.2
511,472 - HER17_RS02300 0.77 +0.5
511,515 + HER17_RS02300 0.80 +0.1
511,515 + HER17_RS02300 0.80 -0.1
511,516 - HER17_RS02300 0.80 +0.1
511,516 - HER17_RS02300 0.80 +0.8
511,521 + HER17_RS02300 0.80 +0.3
511,521 + HER17_RS02300 0.80 -0.5
511,521 + HER17_RS02300 0.80 +0.1
511,522 - HER17_RS02300 0.80 -0.0
511,522 - HER17_RS02300 0.80 +0.1
511,536 + HER17_RS02300 0.81 -0.2
511,536 + HER17_RS02300 0.81 +0.5
511,536 + HER17_RS02300 0.81 +0.2
511,536 + HER17_RS02300 0.81 -0.3
511,537 - HER17_RS02300 0.81 -0.0
511,537 - HER17_RS02300 0.81 +1.2
511,537 - HER17_RS02300 0.81 -0.3
511,550 + HER17_RS02300 0.82 +0.7
511,595 - HER17_RS02300 0.84 +1.2
511,611 + HER17_RS02300 0.85 -0.0
511,612 - HER17_RS02300 0.85 +0.5
511,726 - -0.4
511,738 + -0.1
511,749 - -0.2
511,776 + -0.8
511,777 - -0.3
511,777 - +0.1
511,777 - +0.5
511,824 + +1.6
511,824 + -0.2
511,824 + -0.3
511,824 + -0.1
511,825 - -0.9
511,825 - +0.5
511,825 - -0.6
511,825 - +0.9
511,829 + +0.8
511,829 + +0.1
511,829 + +0.0
511,829 + +0.3
511,829 + +0.4
511,829 + +0.4
511,832 + -0.4
511,832 + +0.5
511,833 - +0.8
511,833 - +0.1
512,001 + -0.5
512,024 - +0.7
512,068 - +0.6
512,084 + +0.1
512,085 - +0.4
512,090 + -0.1
512,091 - -0.5
512,091 - -0.3
512,094 - -0.2
512,094 - -0.5
512,094 - +0.1
512,094 - -0.1
512,124 + -0.2
512,125 - -0.8
512,287 + HER17_RS02305 0.17 +0.4
512,287 + HER17_RS02305 0.17 -1.1
512,407 + HER17_RS02305 0.32 +0.5
512,408 - HER17_RS02305 0.32 +0.1
512,408 - HER17_RS02305 0.32 +1.7
512,408 - HER17_RS02305 0.32 +0.2
512,459 + HER17_RS02305 0.38 -0.0
512,459 + HER17_RS02305 0.38 -1.5
512,459 + HER17_RS02305 0.38 -0.8
512,459 + HER17_RS02305 0.38 +0.1
512,545 + HER17_RS02305 0.48 +0.7
512,545 + HER17_RS02305 0.48 +0.0
512,545 + HER17_RS02305 0.48 +2.2
512,545 + HER17_RS02305 0.48 +1.2
512,578 + HER17_RS02305 0.52 +0.6
512,579 - HER17_RS02305 0.52 -0.4
512,579 - HER17_RS02305 0.52 -0.4
512,631 - HER17_RS02305 0.59 -0.5
512,639 + HER17_RS02305 0.60 -0.2
512,639 + HER17_RS02305 0.60 -0.1
512,640 - HER17_RS02305 0.60 -0.4
512,640 - HER17_RS02305 0.60 +1.4
512,640 - HER17_RS02305 0.60 -0.2
512,640 - HER17_RS02305 0.60 -0.2
512,857 + HER17_RS02305 0.86 +0.4
512,858 - HER17_RS02305 0.86 -0.2
512,859 + HER17_RS02305 0.86 -0.3
512,860 - HER17_RS02305 0.86 -0.1
512,860 - HER17_RS02305 0.86 -1.1
512,860 - HER17_RS02305 0.86 -0.1
512,860 - HER17_RS02305 0.86 -0.5
512,860 - HER17_RS02305 0.86 -0.2
512,860 - HER17_RS02305 0.86 +0.4

Or see this region's nucleotide sequence