Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01915 and HER17_RS01920 are separated by 373 nucleotides HER17_RS01920 and HER17_RS01925 are separated by 38 nucleotides HER17_RS01925 and HER17_RS01930 are separated by 125 nucleotides HER17_RS01930 and HER17_RS01935 overlap by 4 nucleotides
HER17_RS01915: HER17_RS01915 - cAMP-activated global transcriptional regulator CRP, at 450,090 to 450,722
_RS01915
HER17_RS01920: HER17_RS01920 - OsmC family protein, at 451,096 to 451,503
_RS01920
HER17_RS01925: HER17_RS01925 - phosphoribulokinase, at 451,542 to 452,411
_RS01925
HER17_RS01930: HER17_RS01930 - YheU family protein, at 452,537 to 452,773
_RS01930
HER17_RS01935: HER17_RS01935 - hydrolase, at 452,770 to 453,810
_RS01935
Position (kb) 451
452
453 Strain fitness (log2 ratio) -2
-1
0
1
2 at 450.760 kb on - strand at 450.792 kb on - strand at 450.840 kb on - strand at 450.842 kb on - strand at 450.842 kb on - strand at 450.856 kb on - strand at 450.856 kb on - strand at 450.905 kb on + strand at 450.905 kb on + strand at 450.905 kb on + strand at 450.906 kb on - strand at 450.906 kb on - strand at 450.908 kb on - strand at 450.920 kb on - strand at 450.920 kb on - strand at 450.920 kb on - strand at 450.959 kb on + strand at 450.960 kb on - strand at 450.976 kb on - strand at 451.214 kb on + strand, within HER17_RS01920 at 451.341 kb on + strand, within HER17_RS01920 at 451.341 kb on + strand, within HER17_RS01920 at 451.429 kb on + strand, within HER17_RS01920 at 451.430 kb on - strand, within HER17_RS01920 at 451.430 kb on - strand, within HER17_RS01920 at 451.430 kb on - strand, within HER17_RS01920 at 451.488 kb on + strand at 451.501 kb on + strand at 451.593 kb on + strand at 451.593 kb on + strand at 451.593 kb on + strand at 451.593 kb on + strand at 451.594 kb on - strand at 451.594 kb on - strand at 451.652 kb on + strand, within HER17_RS01925 at 451.652 kb on + strand, within HER17_RS01925 at 451.653 kb on - strand, within HER17_RS01925 at 451.681 kb on + strand, within HER17_RS01925 at 451.681 kb on + strand, within HER17_RS01925 at 451.681 kb on + strand, within HER17_RS01925 at 451.687 kb on + strand, within HER17_RS01925 at 451.693 kb on + strand, within HER17_RS01925 at 451.694 kb on + strand, within HER17_RS01925 at 451.694 kb on + strand, within HER17_RS01925 at 451.695 kb on - strand, within HER17_RS01925 at 451.784 kb on + strand, within HER17_RS01925 at 451.833 kb on - strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.843 kb on + strand, within HER17_RS01925 at 451.843 kb on + strand, within HER17_RS01925 at 451.844 kb on - strand, within HER17_RS01925 at 451.844 kb on - strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.027 kb on - strand, within HER17_RS01925 at 452.027 kb on - strand, within HER17_RS01925 at 452.027 kb on - strand, within HER17_RS01925 at 452.091 kb on - strand, within HER17_RS01925 at 452.091 kb on - strand, within HER17_RS01925 at 452.093 kb on - strand, within HER17_RS01925 at 452.110 kb on + strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.114 kb on + strand, within HER17_RS01925 at 452.115 kb on - strand, within HER17_RS01925 at 452.123 kb on - strand, within HER17_RS01925 at 452.123 kb on - strand, within HER17_RS01925 at 452.126 kb on + strand, within HER17_RS01925 at 452.126 kb on + strand, within HER17_RS01925 at 452.126 kb on + strand, within HER17_RS01925 at 452.127 kb on - strand, within HER17_RS01925 at 452.155 kb on + strand, within HER17_RS01925 at 452.210 kb on - strand, within HER17_RS01925 at 452.210 kb on - strand, within HER17_RS01925 at 452.270 kb on + strand, within HER17_RS01925 at 452.271 kb on - strand, within HER17_RS01925 at 452.272 kb on + strand, within HER17_RS01925 at 452.272 kb on + strand, within HER17_RS01925 at 452.273 kb on - strand, within HER17_RS01925 at 452.411 kb on + strand at 452.411 kb on + strand at 452.412 kb on - strand at 452.481 kb on + strand at 452.481 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.489 kb on + strand at 452.499 kb on - strand at 452.542 kb on - strand at 452.584 kb on + strand, within HER17_RS01930 at 452.584 kb on + strand, within HER17_RS01930 at 452.585 kb on - strand, within HER17_RS01930 at 452.585 kb on - strand, within HER17_RS01930 at 452.600 kb on + strand, within HER17_RS01930 at 452.600 kb on + strand, within HER17_RS01930 at 452.768 kb on - strand at 452.777 kb on - strand at 452.958 kb on + strand, within HER17_RS01935 at 452.959 kb on - strand, within HER17_RS01935 at 452.959 kb on - strand, within HER17_RS01935 at 452.961 kb on + strand, within HER17_RS01935 at 452.961 kb on + strand, within HER17_RS01935 at 452.961 kb on + strand, within HER17_RS01935 at 452.962 kb on - strand, within HER17_RS01935 at 452.968 kb on + strand, within HER17_RS01935 at 453.042 kb on + strand, within HER17_RS01935 at 453.046 kb on + strand, within HER17_RS01935 at 453.047 kb on - strand, within HER17_RS01935 at 453.047 kb on - strand, within HER17_RS01935 at 453.056 kb on - strand, within HER17_RS01935 at 453.058 kb on + strand, within HER17_RS01935 at 453.058 kb on + strand, within HER17_RS01935 at 453.059 kb on - strand, within HER17_RS01935 at 453.073 kb on - strand, within HER17_RS01935 at 453.083 kb on + strand, within HER17_RS01935 at 453.086 kb on + strand, within HER17_RS01935 at 453.087 kb on - strand, within HER17_RS01935 at 453.123 kb on + strand, within HER17_RS01935 at 453.123 kb on + strand, within HER17_RS01935 at 453.124 kb on - strand, within HER17_RS01935 at 453.124 kb on - strand, within HER17_RS01935 at 453.146 kb on - strand, within HER17_RS01935 at 453.245 kb on + strand, within HER17_RS01935 at 453.246 kb on - strand, within HER17_RS01935 at 453.255 kb on - strand, within HER17_RS01935 at 453.289 kb on - strand, within HER17_RS01935 at 453.334 kb on + strand, within HER17_RS01935 at 453.334 kb on + strand, within HER17_RS01935 at 453.334 kb on + strand, within HER17_RS01935 at 453.335 kb on - strand, within HER17_RS01935 at 453.339 kb on + strand, within HER17_RS01935
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 450,760 - -1.8 450,792 - -0.8 450,840 - +1.6 450,842 - -0.3 450,842 - -0.4 450,856 - +0.1 450,856 - -0.8 450,905 + -1.1 450,905 + -0.1 450,905 + -1.4 450,906 - +0.1 450,906 - +0.8 450,908 - -0.4 450,920 - +0.0 450,920 - +0.5 450,920 - +0.3 450,959 + -0.2 450,960 - +0.3 450,976 - +0.5 451,214 + HER17_RS01920 0.29 +0.9 451,341 + HER17_RS01920 0.60 +0.0 451,341 + HER17_RS01920 0.60 -0.2 451,429 + HER17_RS01920 0.82 +0.8 451,430 - HER17_RS01920 0.82 +0.3 451,430 - HER17_RS01920 0.82 +0.3 451,430 - HER17_RS01920 0.82 +0.4 451,488 + +0.6 451,501 + +0.6 451,593 + +0.9 451,593 + -0.5 451,593 + +0.9 451,593 + -0.2 451,594 - +0.4 451,594 - +0.2 451,652 + HER17_RS01925 0.13 -0.4 451,652 + HER17_RS01925 0.13 +0.3 451,653 - HER17_RS01925 0.13 -0.1 451,681 + HER17_RS01925 0.16 +0.6 451,681 + HER17_RS01925 0.16 -0.1 451,681 + HER17_RS01925 0.16 -0.3 451,687 + HER17_RS01925 0.17 +0.5 451,693 + HER17_RS01925 0.17 +0.7 451,694 + HER17_RS01925 0.17 +0.3 451,694 + HER17_RS01925 0.17 +1.6 451,695 - HER17_RS01925 0.18 +0.6 451,784 + HER17_RS01925 0.28 +0.4 451,833 - HER17_RS01925 0.33 -0.0 451,834 + HER17_RS01925 0.34 -0.0 451,834 + HER17_RS01925 0.34 -0.1 451,834 + HER17_RS01925 0.34 +0.3 451,834 + HER17_RS01925 0.34 -0.4 451,834 + HER17_RS01925 0.34 +0.7 451,835 - HER17_RS01925 0.34 -0.6 451,835 - HER17_RS01925 0.34 -0.2 451,835 - HER17_RS01925 0.34 -1.8 451,835 - HER17_RS01925 0.34 +0.2 451,835 - HER17_RS01925 0.34 -0.4 451,835 - HER17_RS01925 0.34 -0.0 451,835 - HER17_RS01925 0.34 -1.1 451,835 - HER17_RS01925 0.34 +1.0 451,835 - HER17_RS01925 0.34 -0.0 451,843 + HER17_RS01925 0.35 +1.0 451,843 + HER17_RS01925 0.35 +0.6 451,844 - HER17_RS01925 0.35 +0.6 451,844 - HER17_RS01925 0.35 +0.0 452,026 + HER17_RS01925 0.56 +0.1 452,026 + HER17_RS01925 0.56 -1.7 452,026 + HER17_RS01925 0.56 +0.2 452,026 + HER17_RS01925 0.56 +0.0 452,026 + HER17_RS01925 0.56 +0.2 452,027 - HER17_RS01925 0.56 -0.4 452,027 - HER17_RS01925 0.56 +0.2 452,027 - HER17_RS01925 0.56 -0.2 452,091 - HER17_RS01925 0.63 -0.3 452,091 - HER17_RS01925 0.63 -0.4 452,093 - HER17_RS01925 0.63 -0.3 452,110 + HER17_RS01925 0.65 +0.5 452,111 - HER17_RS01925 0.65 +1.0 452,111 - HER17_RS01925 0.65 +0.1 452,111 - HER17_RS01925 0.65 +0.2 452,111 - HER17_RS01925 0.65 -0.7 452,111 - HER17_RS01925 0.65 -0.5 452,114 + HER17_RS01925 0.66 -0.3 452,115 - HER17_RS01925 0.66 +0.9 452,123 - HER17_RS01925 0.67 +0.1 452,123 - HER17_RS01925 0.67 -0.7 452,126 + HER17_RS01925 0.67 +1.2 452,126 + HER17_RS01925 0.67 -0.8 452,126 + HER17_RS01925 0.67 +0.1 452,127 - HER17_RS01925 0.67 -0.7 452,155 + HER17_RS01925 0.70 +0.0 452,210 - HER17_RS01925 0.77 -0.0 452,210 - HER17_RS01925 0.77 +0.0 452,270 + HER17_RS01925 0.84 -0.6 452,271 - HER17_RS01925 0.84 -0.2 452,272 + HER17_RS01925 0.84 +0.8 452,272 + HER17_RS01925 0.84 +0.3 452,273 - HER17_RS01925 0.84 +0.3 452,411 + +0.8 452,411 + +0.7 452,412 - -0.3 452,481 + +0.5 452,481 + +1.3 452,485 + +1.1 452,485 + +1.2 452,485 + +2.4 452,485 + +0.3 452,485 + +0.8 452,485 + +0.3 452,485 + +0.3 452,485 + +0.3 452,486 - +0.2 452,486 - +0.0 452,486 - -0.2 452,486 - +0.5 452,486 - -0.1 452,486 - -0.6 452,486 - -0.4 452,486 - +0.0 452,489 + -0.4 452,499 - -0.5 452,542 - -0.1 452,584 + HER17_RS01930 0.20 +0.4 452,584 + HER17_RS01930 0.20 -0.7 452,585 - HER17_RS01930 0.20 -0.9 452,585 - HER17_RS01930 0.20 +1.3 452,600 + HER17_RS01930 0.27 -0.5 452,600 + HER17_RS01930 0.27 -0.8 452,768 - -0.3 452,777 - +0.4 452,958 + HER17_RS01935 0.18 +0.5 452,959 - HER17_RS01935 0.18 +0.3 452,959 - HER17_RS01935 0.18 +0.2 452,961 + HER17_RS01935 0.18 +0.1 452,961 + HER17_RS01935 0.18 +0.2 452,961 + HER17_RS01935 0.18 -0.5 452,962 - HER17_RS01935 0.18 -0.4 452,968 + HER17_RS01935 0.19 +0.8 453,042 + HER17_RS01935 0.26 +0.4 453,046 + HER17_RS01935 0.27 +0.4 453,047 - HER17_RS01935 0.27 +0.1 453,047 - HER17_RS01935 0.27 -0.0 453,056 - HER17_RS01935 0.27 +0.1 453,058 + HER17_RS01935 0.28 +0.2 453,058 + HER17_RS01935 0.28 +1.0 453,059 - HER17_RS01935 0.28 +0.7 453,073 - HER17_RS01935 0.29 +0.1 453,083 + HER17_RS01935 0.30 +0.1 453,086 + HER17_RS01935 0.30 +1.9 453,087 - HER17_RS01935 0.30 +1.2 453,123 + HER17_RS01935 0.34 -0.0 453,123 + HER17_RS01935 0.34 -0.1 453,124 - HER17_RS01935 0.34 -0.6 453,124 - HER17_RS01935 0.34 -0.3 453,146 - HER17_RS01935 0.36 +0.4 453,245 + HER17_RS01935 0.46 +0.3 453,246 - HER17_RS01935 0.46 +0.3 453,255 - HER17_RS01935 0.47 -0.2 453,289 - HER17_RS01935 0.50 -0.0 453,334 + HER17_RS01935 0.54 +0.6 453,334 + HER17_RS01935 0.54 +0.0 453,334 + HER17_RS01935 0.54 +0.9 453,335 - HER17_RS01935 0.54 +0.7 453,339 + HER17_RS01935 0.55 +0.1
Or see this region's nucleotide sequence