Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01905 and HER17_RS01910 are separated by 119 nucleotides HER17_RS01910 and HER17_RS01915 are separated by 158 nucleotides
HER17_RS01905: HER17_RS01905 - aminodeoxychorismate synthase component II, at 448,010 to 448,585
_RS01905
HER17_RS01910: HER17_RS01910 - aspartate aminotransferase family protein, at 448,705 to 449,931
_RS01910
HER17_RS01915: HER17_RS01915 - cAMP-activated global transcriptional regulator CRP, at 450,090 to 450,722
_RS01915
Position (kb) 448
449
450 Strain fitness (log2 ratio) -2
-1
0
1 at 447.827 kb on + strand at 447.886 kb on - strand at 447.897 kb on - strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.977 kb on - strand at 447.977 kb on - strand at 447.977 kb on - strand at 447.977 kb on - strand at 448.009 kb on + strand at 448.009 kb on + strand at 448.009 kb on + strand at 448.010 kb on - strand at 448.010 kb on - strand at 448.010 kb on - strand at 448.017 kb on + strand at 448.017 kb on + strand at 448.018 kb on - strand at 448.018 kb on - strand at 448.027 kb on + strand at 448.031 kb on + strand at 448.031 kb on + strand at 448.031 kb on + strand at 448.032 kb on - strand at 448.042 kb on + strand at 448.046 kb on + strand at 448.046 kb on + strand at 448.056 kb on - strand at 448.171 kb on + strand, within HER17_RS01905 at 448.171 kb on + strand, within HER17_RS01905 at 448.222 kb on + strand, within HER17_RS01905 at 448.231 kb on + strand, within HER17_RS01905 at 448.232 kb on - strand, within HER17_RS01905 at 448.591 kb on + strand at 448.591 kb on + strand at 448.600 kb on - strand at 448.650 kb on + strand at 448.784 kb on + strand at 448.834 kb on + strand, within HER17_RS01910 at 448.834 kb on + strand, within HER17_RS01910 at 448.835 kb on - strand, within HER17_RS01910 at 448.855 kb on - strand, within HER17_RS01910 at 448.855 kb on - strand, within HER17_RS01910 at 448.941 kb on + strand, within HER17_RS01910 at 448.942 kb on - strand, within HER17_RS01910 at 449.053 kb on - strand, within HER17_RS01910 at 449.085 kb on + strand, within HER17_RS01910 at 449.086 kb on - strand, within HER17_RS01910 at 449.116 kb on + strand, within HER17_RS01910 at 449.116 kb on + strand, within HER17_RS01910 at 449.116 kb on + strand, within HER17_RS01910 at 449.169 kb on + strand, within HER17_RS01910 at 449.173 kb on + strand, within HER17_RS01910 at 449.173 kb on + strand, within HER17_RS01910 at 449.173 kb on + strand, within HER17_RS01910 at 449.174 kb on - strand, within HER17_RS01910 at 449.174 kb on - strand, within HER17_RS01910 at 449.174 kb on - strand, within HER17_RS01910 at 449.174 kb on - strand, within HER17_RS01910 at 449.174 kb on - strand, within HER17_RS01910 at 449.194 kb on - strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.262 kb on + strand, within HER17_RS01910 at 449.263 kb on - strand, within HER17_RS01910 at 449.263 kb on - strand, within HER17_RS01910 at 449.263 kb on - strand, within HER17_RS01910 at 449.263 kb on - strand, within HER17_RS01910 at 449.375 kb on + strand, within HER17_RS01910 at 449.376 kb on - strand, within HER17_RS01910 at 449.376 kb on - strand, within HER17_RS01910 at 449.376 kb on - strand, within HER17_RS01910 at 449.417 kb on + strand, within HER17_RS01910 at 449.417 kb on + strand, within HER17_RS01910 at 449.440 kb on - strand, within HER17_RS01910 at 449.442 kb on + strand, within HER17_RS01910 at 449.442 kb on + strand, within HER17_RS01910 at 449.442 kb on + strand, within HER17_RS01910 at 449.544 kb on - strand, within HER17_RS01910 at 449.557 kb on + strand, within HER17_RS01910 at 449.557 kb on + strand, within HER17_RS01910 at 449.557 kb on + strand, within HER17_RS01910 at 449.557 kb on + strand, within HER17_RS01910 at 449.558 kb on - strand, within HER17_RS01910 at 449.558 kb on - strand, within HER17_RS01910 at 449.607 kb on + strand, within HER17_RS01910 at 449.607 kb on + strand, within HER17_RS01910 at 449.607 kb on + strand, within HER17_RS01910 at 449.607 kb on + strand, within HER17_RS01910 at 449.608 kb on - strand, within HER17_RS01910 at 449.608 kb on - strand, within HER17_RS01910 at 449.608 kb on - strand, within HER17_RS01910 at 449.608 kb on - strand, within HER17_RS01910 at 449.610 kb on + strand, within HER17_RS01910 at 449.624 kb on + strand, within HER17_RS01910 at 449.624 kb on + strand, within HER17_RS01910 at 449.625 kb on - strand, within HER17_RS01910 at 449.625 kb on - strand, within HER17_RS01910 at 449.625 kb on - strand, within HER17_RS01910 at 449.697 kb on - strand, within HER17_RS01910 at 449.803 kb on - strand, within HER17_RS01910 at 449.803 kb on - strand, within HER17_RS01910 at 449.841 kb on - strand at 449.868 kb on + strand at 449.933 kb on + strand at 449.934 kb on - strand at 449.934 kb on - strand at 449.934 kb on - strand at 449.965 kb on + strand at 449.966 kb on - strand at 450.065 kb on - strand at 450.071 kb on - strand at 450.075 kb on + strand at 450.760 kb on - strand at 450.792 kb on - strand at 450.840 kb on - strand at 450.842 kb on - strand at 450.842 kb on - strand at 450.856 kb on - strand at 450.856 kb on - strand at 450.905 kb on + strand at 450.905 kb on + strand at 450.905 kb on + strand at 450.906 kb on - strand at 450.906 kb on - strand at 450.908 kb on - strand at 450.920 kb on - strand at 450.920 kb on - strand at 450.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 447,827 + -0.1 447,886 - -0.1 447,897 - -0.4 447,971 + -0.9 447,971 + -0.0 447,971 + -0.1 447,971 + -0.2 447,971 + +0.5 447,971 + +0.1 447,971 + -0.2 447,971 + +0.3 447,972 - +1.2 447,972 - +0.0 447,972 - +0.3 447,972 - +0.0 447,972 - -0.1 447,972 - +0.1 447,972 - +0.3 447,972 - -0.2 447,976 + -1.7 447,976 + +0.5 447,976 + -0.0 447,976 + +0.1 447,977 - +0.1 447,977 - +0.9 447,977 - +0.5 447,977 - +0.3 448,009 + +0.5 448,009 + -0.7 448,009 + +0.6 448,010 - -1.4 448,010 - +0.0 448,010 - +0.2 448,017 + +0.5 448,017 + +0.5 448,018 - +0.1 448,018 - -1.3 448,027 + -0.1 448,031 + +0.1 448,031 + -0.2 448,031 + +1.0 448,032 - +0.1 448,042 + -0.2 448,046 + -0.4 448,046 + +0.0 448,056 - -0.2 448,171 + HER17_RS01905 0.28 -0.2 448,171 + HER17_RS01905 0.28 -0.1 448,222 + HER17_RS01905 0.37 +0.1 448,231 + HER17_RS01905 0.38 -0.2 448,232 - HER17_RS01905 0.39 -1.3 448,591 + +0.4 448,591 + -0.0 448,600 - -1.1 448,650 + -0.1 448,784 + +0.1 448,834 + HER17_RS01910 0.11 -0.4 448,834 + HER17_RS01910 0.11 -0.7 448,835 - HER17_RS01910 0.11 -1.1 448,855 - HER17_RS01910 0.12 -0.0 448,855 - HER17_RS01910 0.12 +0.3 448,941 + HER17_RS01910 0.19 +0.2 448,942 - HER17_RS01910 0.19 -0.6 449,053 - HER17_RS01910 0.28 +0.8 449,085 + HER17_RS01910 0.31 +0.6 449,086 - HER17_RS01910 0.31 -0.5 449,116 + HER17_RS01910 0.33 +0.1 449,116 + HER17_RS01910 0.33 +0.1 449,116 + HER17_RS01910 0.33 +0.3 449,169 + HER17_RS01910 0.38 -0.1 449,173 + HER17_RS01910 0.38 +0.3 449,173 + HER17_RS01910 0.38 -0.1 449,173 + HER17_RS01910 0.38 -0.3 449,174 - HER17_RS01910 0.38 +0.5 449,174 - HER17_RS01910 0.38 -0.2 449,174 - HER17_RS01910 0.38 -0.0 449,174 - HER17_RS01910 0.38 +0.2 449,174 - HER17_RS01910 0.38 -0.1 449,194 - HER17_RS01910 0.40 -0.9 449,262 + HER17_RS01910 0.45 -0.0 449,262 + HER17_RS01910 0.45 +0.6 449,262 + HER17_RS01910 0.45 +0.1 449,262 + HER17_RS01910 0.45 +0.3 449,262 + HER17_RS01910 0.45 -0.4 449,262 + HER17_RS01910 0.45 +0.3 449,263 - HER17_RS01910 0.45 -0.6 449,263 - HER17_RS01910 0.45 -0.2 449,263 - HER17_RS01910 0.45 -0.2 449,263 - HER17_RS01910 0.45 -0.1 449,375 + HER17_RS01910 0.55 +0.9 449,376 - HER17_RS01910 0.55 -0.1 449,376 - HER17_RS01910 0.55 +0.2 449,376 - HER17_RS01910 0.55 -0.2 449,417 + HER17_RS01910 0.58 -0.7 449,417 + HER17_RS01910 0.58 -0.1 449,440 - HER17_RS01910 0.60 -0.2 449,442 + HER17_RS01910 0.60 +0.9 449,442 + HER17_RS01910 0.60 -0.5 449,442 + HER17_RS01910 0.60 +0.5 449,544 - HER17_RS01910 0.68 +0.1 449,557 + HER17_RS01910 0.69 -0.1 449,557 + HER17_RS01910 0.69 -0.1 449,557 + HER17_RS01910 0.69 +0.3 449,557 + HER17_RS01910 0.69 +0.1 449,558 - HER17_RS01910 0.70 -0.1 449,558 - HER17_RS01910 0.70 -0.0 449,607 + HER17_RS01910 0.74 -0.6 449,607 + HER17_RS01910 0.74 +0.5 449,607 + HER17_RS01910 0.74 -0.0 449,607 + HER17_RS01910 0.74 -1.2 449,608 - HER17_RS01910 0.74 -0.2 449,608 - HER17_RS01910 0.74 -0.4 449,608 - HER17_RS01910 0.74 +0.5 449,608 - HER17_RS01910 0.74 +0.6 449,610 + HER17_RS01910 0.74 +0.6 449,624 + HER17_RS01910 0.75 -0.4 449,624 + HER17_RS01910 0.75 -1.4 449,625 - HER17_RS01910 0.75 -0.3 449,625 - HER17_RS01910 0.75 -1.7 449,625 - HER17_RS01910 0.75 +0.9 449,697 - HER17_RS01910 0.81 +0.1 449,803 - HER17_RS01910 0.89 -0.9 449,803 - HER17_RS01910 0.89 +0.3 449,841 - +0.2 449,868 + -0.4 449,933 + +0.6 449,934 - -0.4 449,934 - -0.4 449,934 - +1.4 449,965 + -0.3 449,966 - +0.3 450,065 - +0.3 450,071 - -0.4 450,075 + +0.3 450,760 - -1.8 450,792 - -0.8 450,840 - +1.6 450,842 - -0.3 450,842 - -0.4 450,856 - +0.1 450,856 - -0.8 450,905 + -1.1 450,905 + -0.1 450,905 + -1.4 450,906 - +0.1 450,906 - +0.8 450,908 - -0.4 450,920 - +0.0 450,920 - +0.5 450,920 - +0.3
Or see this region's nucleotide sequence