Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01895 and HER17_RS01900 are separated by 668 nucleotides HER17_RS01900 and HER17_RS01905 are separated by 681 nucleotides
HER17_RS01895: HER17_RS01895 - polysaccharide lyase, at 444,411 to 445,535
_RS01895
HER17_RS01900: HER17_RS01900 - polysaccharide lyase, at 446,204 to 447,328
_RS01900
HER17_RS01905: HER17_RS01905 - aminodeoxychorismate synthase component II, at 448,010 to 448,585
_RS01905
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1
2 at 445.228 kb on - strand, within HER17_RS01895 at 445.262 kb on + strand, within HER17_RS01895 at 445.262 kb on + strand, within HER17_RS01895 at 445.306 kb on + strand, within HER17_RS01895 at 445.306 kb on + strand, within HER17_RS01895 at 445.307 kb on - strand, within HER17_RS01895 at 445.380 kb on - strand, within HER17_RS01895 at 445.397 kb on + strand, within HER17_RS01895 at 445.397 kb on + strand, within HER17_RS01895 at 445.397 kb on + strand, within HER17_RS01895 at 445.397 kb on + strand, within HER17_RS01895 at 445.498 kb on - strand at 445.498 kb on - strand at 445.524 kb on + strand at 445.525 kb on - strand at 445.525 kb on - strand at 445.528 kb on + strand at 445.911 kb on - strand at 445.911 kb on - strand at 445.913 kb on - strand at 445.970 kb on + strand at 446.002 kb on + strand at 446.003 kb on - strand at 446.017 kb on + strand at 446.018 kb on - strand at 446.066 kb on + strand at 446.078 kb on - strand at 446.178 kb on + strand at 446.205 kb on + strand at 446.206 kb on - strand at 446.228 kb on + strand at 446.242 kb on + strand at 446.243 kb on - strand at 446.246 kb on + strand at 446.247 kb on - strand at 446.256 kb on + strand at 446.270 kb on - strand at 446.270 kb on - strand at 446.270 kb on - strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.301 kb on + strand at 446.302 kb on - strand at 446.302 kb on - strand at 446.302 kb on - strand at 446.302 kb on - strand at 446.302 kb on - strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.305 kb on + strand at 446.306 kb on - strand at 446.306 kb on - strand at 446.306 kb on - strand at 446.306 kb on - strand at 446.306 kb on - strand at 446.307 kb on + strand at 446.326 kb on + strand, within HER17_RS01900 at 446.375 kb on - strand, within HER17_RS01900 at 446.387 kb on - strand, within HER17_RS01900 at 446.387 kb on - strand, within HER17_RS01900 at 446.392 kb on - strand, within HER17_RS01900 at 446.392 kb on - strand, within HER17_RS01900 at 446.392 kb on - strand, within HER17_RS01900 at 446.417 kb on - strand, within HER17_RS01900 at 446.464 kb on + strand, within HER17_RS01900 at 446.464 kb on + strand, within HER17_RS01900 at 446.539 kb on + strand, within HER17_RS01900 at 446.566 kb on - strand, within HER17_RS01900 at 446.566 kb on - strand, within HER17_RS01900 at 446.566 kb on - strand, within HER17_RS01900 at 446.566 kb on - strand, within HER17_RS01900 at 446.576 kb on - strand, within HER17_RS01900 at 446.577 kb on + strand, within HER17_RS01900 at 446.577 kb on + strand, within HER17_RS01900 at 446.577 kb on + strand, within HER17_RS01900 at 446.577 kb on + strand, within HER17_RS01900 at 446.577 kb on + strand, within HER17_RS01900 at 446.578 kb on - strand, within HER17_RS01900 at 446.578 kb on - strand, within HER17_RS01900 at 446.578 kb on - strand, within HER17_RS01900 at 446.578 kb on - strand, within HER17_RS01900 at 446.578 kb on - strand, within HER17_RS01900 at 446.620 kb on + strand, within HER17_RS01900 at 446.620 kb on + strand, within HER17_RS01900 at 446.636 kb on - strand, within HER17_RS01900 at 446.636 kb on - strand, within HER17_RS01900 at 446.636 kb on - strand, within HER17_RS01900 at 446.646 kb on + strand, within HER17_RS01900 at 446.646 kb on + strand, within HER17_RS01900 at 446.647 kb on - strand, within HER17_RS01900 at 446.657 kb on - strand, within HER17_RS01900 at 446.693 kb on + strand, within HER17_RS01900 at 446.713 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.715 kb on + strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.716 kb on - strand, within HER17_RS01900 at 446.721 kb on + strand, within HER17_RS01900 at 446.721 kb on + strand, within HER17_RS01900 at 446.721 kb on + strand, within HER17_RS01900 at 446.721 kb on + strand, within HER17_RS01900 at 446.722 kb on - strand, within HER17_RS01900 at 446.722 kb on - strand, within HER17_RS01900 at 446.756 kb on - strand, within HER17_RS01900 at 446.899 kb on + strand, within HER17_RS01900 at 446.900 kb on - strand, within HER17_RS01900 at 446.901 kb on + strand, within HER17_RS01900 at 446.902 kb on - strand, within HER17_RS01900 at 446.918 kb on - strand, within HER17_RS01900 at 446.943 kb on - strand, within HER17_RS01900 at 446.943 kb on - strand, within HER17_RS01900 at 446.962 kb on + strand, within HER17_RS01900 at 447.021 kb on - strand, within HER17_RS01900 at 447.058 kb on + strand, within HER17_RS01900 at 447.058 kb on + strand, within HER17_RS01900 at 447.059 kb on - strand, within HER17_RS01900 at 447.059 kb on - strand, within HER17_RS01900 at 447.059 kb on - strand, within HER17_RS01900 at 447.059 kb on - strand, within HER17_RS01900 at 447.059 kb on - strand, within HER17_RS01900 at 447.099 kb on + strand, within HER17_RS01900 at 447.099 kb on + strand, within HER17_RS01900 at 447.099 kb on + strand, within HER17_RS01900 at 447.099 kb on + strand, within HER17_RS01900 at 447.100 kb on - strand, within HER17_RS01900 at 447.103 kb on + strand, within HER17_RS01900 at 447.104 kb on - strand, within HER17_RS01900 at 447.104 kb on - strand, within HER17_RS01900 at 447.104 kb on - strand, within HER17_RS01900 at 447.257 kb on - strand at 447.322 kb on - strand at 447.322 kb on - strand at 447.322 kb on - strand at 447.329 kb on + strand at 447.366 kb on + strand at 447.367 kb on - strand at 447.372 kb on + strand at 447.444 kb on - strand at 447.469 kb on + strand at 447.488 kb on + strand at 447.827 kb on + strand at 447.886 kb on - strand at 447.897 kb on - strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.971 kb on + strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.972 kb on - strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.976 kb on + strand at 447.977 kb on - strand at 447.977 kb on - strand at 447.977 kb on - strand at 447.977 kb on - strand at 448.009 kb on + strand at 448.009 kb on + strand at 448.009 kb on + strand at 448.010 kb on - strand at 448.010 kb on - strand at 448.010 kb on - strand at 448.017 kb on + strand at 448.017 kb on + strand at 448.018 kb on - strand at 448.018 kb on - strand at 448.027 kb on + strand at 448.031 kb on + strand at 448.031 kb on + strand at 448.031 kb on + strand at 448.032 kb on - strand at 448.042 kb on + strand at 448.046 kb on + strand at 448.046 kb on + strand at 448.056 kb on - strand at 448.171 kb on + strand, within HER17_RS01905 at 448.171 kb on + strand, within HER17_RS01905 at 448.222 kb on + strand, within HER17_RS01905 at 448.231 kb on + strand, within HER17_RS01905 at 448.232 kb on - strand, within HER17_RS01905
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 445,228 - HER17_RS01895 0.73 +0.5 445,262 + HER17_RS01895 0.76 +0.0 445,262 + HER17_RS01895 0.76 -0.2 445,306 + HER17_RS01895 0.80 -0.5 445,306 + HER17_RS01895 0.80 +0.1 445,307 - HER17_RS01895 0.80 -2.0 445,380 - HER17_RS01895 0.86 +0.3 445,397 + HER17_RS01895 0.88 -1.4 445,397 + HER17_RS01895 0.88 -0.9 445,397 + HER17_RS01895 0.88 -0.6 445,397 + HER17_RS01895 0.88 -0.4 445,498 - -0.0 445,498 - -0.2 445,524 + +1.2 445,525 - +0.4 445,525 - -1.2 445,528 + -0.5 445,911 - +0.4 445,911 - -0.1 445,913 - +1.2 445,970 + +0.1 446,002 + -0.2 446,003 - +0.4 446,017 + -0.0 446,018 - -1.2 446,066 + +0.4 446,078 - -1.0 446,178 + +0.3 446,205 + -0.5 446,206 - +0.4 446,228 + -2.1 446,242 + -0.6 446,243 - +0.7 446,246 + -0.3 446,247 - +0.3 446,256 + -1.4 446,270 - -0.3 446,270 - +1.0 446,270 - -0.3 446,301 + +0.4 446,301 + +0.2 446,301 + +2.2 446,301 + +0.9 446,301 + -0.4 446,301 + -1.3 446,301 + +0.5 446,302 - +0.2 446,302 - -0.0 446,302 - -0.5 446,302 - +0.0 446,302 - +0.1 446,305 + -0.4 446,305 + +0.0 446,305 + -0.3 446,305 + -1.2 446,305 + -0.5 446,305 + +0.4 446,305 + -0.4 446,305 + +0.3 446,305 + +0.9 446,306 - -0.3 446,306 - -0.6 446,306 - -0.1 446,306 - -0.2 446,306 - -0.3 446,307 + -0.2 446,326 + HER17_RS01900 0.11 +1.9 446,375 - HER17_RS01900 0.15 +0.3 446,387 - HER17_RS01900 0.16 -0.3 446,387 - HER17_RS01900 0.16 +1.2 446,392 - HER17_RS01900 0.17 -0.2 446,392 - HER17_RS01900 0.17 -0.1 446,392 - HER17_RS01900 0.17 +0.3 446,417 - HER17_RS01900 0.19 +1.5 446,464 + HER17_RS01900 0.23 -1.0 446,464 + HER17_RS01900 0.23 +0.2 446,539 + HER17_RS01900 0.30 -0.4 446,566 - HER17_RS01900 0.32 -0.9 446,566 - HER17_RS01900 0.32 +0.1 446,566 - HER17_RS01900 0.32 +0.2 446,566 - HER17_RS01900 0.32 +0.7 446,576 - HER17_RS01900 0.33 -0.9 446,577 + HER17_RS01900 0.33 +0.1 446,577 + HER17_RS01900 0.33 -0.3 446,577 + HER17_RS01900 0.33 -0.1 446,577 + HER17_RS01900 0.33 -1.6 446,577 + HER17_RS01900 0.33 +0.6 446,578 - HER17_RS01900 0.33 -0.4 446,578 - HER17_RS01900 0.33 -0.8 446,578 - HER17_RS01900 0.33 +0.3 446,578 - HER17_RS01900 0.33 -0.1 446,578 - HER17_RS01900 0.33 -0.5 446,620 + HER17_RS01900 0.37 -0.4 446,620 + HER17_RS01900 0.37 +0.3 446,636 - HER17_RS01900 0.38 -0.0 446,636 - HER17_RS01900 0.38 +0.0 446,636 - HER17_RS01900 0.38 +0.5 446,646 + HER17_RS01900 0.39 +0.0 446,646 + HER17_RS01900 0.39 -0.3 446,647 - HER17_RS01900 0.39 +0.1 446,657 - HER17_RS01900 0.40 -0.3 446,693 + HER17_RS01900 0.43 -0.6 446,713 + HER17_RS01900 0.45 +1.4 446,715 + HER17_RS01900 0.45 +0.6 446,715 + HER17_RS01900 0.45 +0.5 446,715 + HER17_RS01900 0.45 +0.3 446,715 + HER17_RS01900 0.45 -0.5 446,715 + HER17_RS01900 0.45 -0.1 446,715 + HER17_RS01900 0.45 +0.6 446,715 + HER17_RS01900 0.45 +0.0 446,715 + HER17_RS01900 0.45 +0.1 446,715 + HER17_RS01900 0.45 +0.5 446,715 + HER17_RS01900 0.45 +0.4 446,715 + HER17_RS01900 0.45 +0.7 446,716 - HER17_RS01900 0.46 -0.1 446,716 - HER17_RS01900 0.46 -0.3 446,716 - HER17_RS01900 0.46 -1.0 446,716 - HER17_RS01900 0.46 -0.6 446,716 - HER17_RS01900 0.46 +0.3 446,716 - HER17_RS01900 0.46 +1.3 446,716 - HER17_RS01900 0.46 +1.5 446,721 + HER17_RS01900 0.46 +0.1 446,721 + HER17_RS01900 0.46 -0.4 446,721 + HER17_RS01900 0.46 -0.4 446,721 + HER17_RS01900 0.46 -0.4 446,722 - HER17_RS01900 0.46 -0.4 446,722 - HER17_RS01900 0.46 +0.8 446,756 - HER17_RS01900 0.49 -0.8 446,899 + HER17_RS01900 0.62 +0.1 446,900 - HER17_RS01900 0.62 +1.0 446,901 + HER17_RS01900 0.62 +0.1 446,902 - HER17_RS01900 0.62 -1.0 446,918 - HER17_RS01900 0.63 +0.6 446,943 - HER17_RS01900 0.66 +0.2 446,943 - HER17_RS01900 0.66 -1.7 446,962 + HER17_RS01900 0.67 -0.3 447,021 - HER17_RS01900 0.73 +0.9 447,058 + HER17_RS01900 0.76 +0.2 447,058 + HER17_RS01900 0.76 -0.1 447,059 - HER17_RS01900 0.76 -0.1 447,059 - HER17_RS01900 0.76 +0.0 447,059 - HER17_RS01900 0.76 -0.4 447,059 - HER17_RS01900 0.76 +0.4 447,059 - HER17_RS01900 0.76 +1.0 447,099 + HER17_RS01900 0.80 -0.0 447,099 + HER17_RS01900 0.80 +0.4 447,099 + HER17_RS01900 0.80 +0.6 447,099 + HER17_RS01900 0.80 -0.3 447,100 - HER17_RS01900 0.80 +0.2 447,103 + HER17_RS01900 0.80 +0.4 447,104 - HER17_RS01900 0.80 -0.4 447,104 - HER17_RS01900 0.80 +0.0 447,104 - HER17_RS01900 0.80 +0.4 447,257 - -0.3 447,322 - +0.1 447,322 - -0.5 447,322 - +1.0 447,329 + -0.7 447,366 + -0.2 447,367 - +0.1 447,372 + +0.1 447,444 - -0.2 447,469 + +0.0 447,488 + +0.4 447,827 + -0.1 447,886 - -0.1 447,897 - -0.4 447,971 + -0.9 447,971 + -0.0 447,971 + -0.1 447,971 + -0.2 447,971 + +0.5 447,971 + +0.1 447,971 + -0.2 447,971 + +0.3 447,972 - +1.2 447,972 - +0.0 447,972 - +0.3 447,972 - +0.0 447,972 - -0.1 447,972 - +0.1 447,972 - +0.3 447,972 - -0.2 447,976 + -1.7 447,976 + +0.5 447,976 + -0.0 447,976 + +0.1 447,977 - +0.1 447,977 - +0.9 447,977 - +0.5 447,977 - +0.3 448,009 + +0.5 448,009 + -0.7 448,009 + +0.6 448,010 - -1.4 448,010 - +0.0 448,010 - +0.2 448,017 + +0.5 448,017 + +0.5 448,018 - +0.1 448,018 - -1.3 448,027 + -0.1 448,031 + +0.1 448,031 + -0.2 448,031 + +1.0 448,032 - +0.1 448,042 + -0.2 448,046 + -0.4 448,046 + +0.0 448,056 - -0.2 448,171 + HER17_RS01905 0.28 -0.2 448,171 + HER17_RS01905 0.28 -0.1 448,222 + HER17_RS01905 0.37 +0.1 448,231 + HER17_RS01905 0.38 -0.2 448,232 - HER17_RS01905 0.39 -1.3
Or see this region's nucleotide sequence