Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01770 and HER17_RS01775 are separated by 351 nucleotides HER17_RS01775 and HER17_RS01780 are separated by 51 nucleotides
HER17_RS01770: HER17_RS01770 - DNA uptake porin HofQ, at 415,519 to 416,793
_RS01770
HER17_RS01775: HER17_RS01775 - shikimate kinase AroK, at 417,145 to 417,666
_RS01775
HER17_RS01780: HER17_RS01780 - 3-dehydroquinate synthase, at 417,718 to 418,803
_RS01780
Position (kb) 417
418 Strain fitness (log2 ratio) -2
-1
0
1 at 416.291 kb on + strand, within HER17_RS01770 at 416.371 kb on - strand, within HER17_RS01770 at 416.453 kb on + strand, within HER17_RS01770 at 416.467 kb on - strand, within HER17_RS01770 at 416.497 kb on - strand, within HER17_RS01770 at 416.622 kb on + strand, within HER17_RS01770 at 416.630 kb on + strand, within HER17_RS01770 at 416.675 kb on + strand at 416.675 kb on + strand at 416.675 kb on + strand at 416.676 kb on - strand at 416.700 kb on - strand at 416.736 kb on + strand at 416.736 kb on + strand at 416.796 kb on - strand at 416.820 kb on + strand at 416.820 kb on + strand at 416.820 kb on + strand at 416.820 kb on + strand at 416.821 kb on - strand at 416.821 kb on - strand at 416.850 kb on + strand at 416.872 kb on - strand at 416.897 kb on - strand at 416.897 kb on - strand at 416.901 kb on + strand at 416.901 kb on + strand at 416.901 kb on + strand at 416.901 kb on + strand at 416.902 kb on - strand at 416.960 kb on + strand at 416.960 kb on + strand at 416.960 kb on + strand at 416.960 kb on + strand at 416.961 kb on - strand at 416.961 kb on - strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.963 kb on + strand at 416.964 kb on - strand at 416.964 kb on - strand at 417.011 kb on + strand at 417.011 kb on + strand at 417.074 kb on + strand at 417.128 kb on + strand at 417.664 kb on + strand at 417.664 kb on + strand at 417.664 kb on + strand at 417.665 kb on - strand at 417.665 kb on - strand at 417.672 kb on + strand at 417.672 kb on + strand at 417.672 kb on + strand at 417.673 kb on - strand at 417.729 kb on + strand at 417.750 kb on + strand at 417.751 kb on - strand at 417.780 kb on - strand at 418.046 kb on + strand, within HER17_RS01780 at 418.189 kb on + strand, within HER17_RS01780 at 418.367 kb on - strand, within HER17_RS01780 at 418.458 kb on + strand, within HER17_RS01780 at 418.459 kb on - strand, within HER17_RS01780 at 418.660 kb on + strand, within HER17_RS01780 at 418.660 kb on + strand, within HER17_RS01780 at 418.660 kb on + strand, within HER17_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 416,291 + HER17_RS01770 0.61 -1.2 416,371 - HER17_RS01770 0.67 +0.1 416,453 + HER17_RS01770 0.73 +0.3 416,467 - HER17_RS01770 0.74 -0.7 416,497 - HER17_RS01770 0.77 +0.5 416,622 + HER17_RS01770 0.87 -0.2 416,630 + HER17_RS01770 0.87 -0.3 416,675 + +1.1 416,675 + +0.2 416,675 + +0.0 416,676 - -0.2 416,700 - -1.3 416,736 + +0.9 416,736 + +0.2 416,796 - -0.7 416,820 + -0.5 416,820 + -0.8 416,820 + +0.2 416,820 + +0.9 416,821 - +0.3 416,821 - +0.3 416,850 + +0.2 416,872 - -0.5 416,897 - +1.0 416,897 - +0.4 416,901 + +0.2 416,901 + +0.3 416,901 + +1.5 416,901 + -0.5 416,902 - +0.6 416,960 + -0.0 416,960 + +0.4 416,960 + -0.2 416,960 + -0.4 416,961 - -0.6 416,961 - -0.7 416,963 + -0.1 416,963 + +0.0 416,963 + +0.4 416,963 + -1.5 416,963 + -1.9 416,963 + -1.5 416,963 + +0.1 416,964 - -0.2 416,964 - -1.1 417,011 + -0.5 417,011 + +0.2 417,074 + +1.5 417,128 + -0.3 417,664 + -0.7 417,664 + -0.6 417,664 + +0.2 417,665 - +0.2 417,665 - -0.7 417,672 + -0.2 417,672 + -0.5 417,672 + +0.4 417,673 - -0.2 417,729 + -0.6 417,750 + +0.9 417,751 - -1.1 417,780 - -1.6 418,046 + HER17_RS01780 0.30 -0.8 418,189 + HER17_RS01780 0.43 -0.8 418,367 - HER17_RS01780 0.60 -1.3 418,458 + HER17_RS01780 0.68 -0.4 418,459 - HER17_RS01780 0.68 -0.1 418,660 + HER17_RS01780 0.87 +0.2 418,660 + HER17_RS01780 0.87 -0.1 418,660 + HER17_RS01780 0.87 +0.1
Or see this region's nucleotide sequence