Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01470 and HER17_RS01475 are separated by 155 nucleotides HER17_RS01475 and HER17_RS01480 are separated by 40 nucleotides
HER17_RS01470: HER17_RS01470 - aspartate-semialdehyde dehydrogenase, at 336,877 to 337,980
_RS01470
HER17_RS01475: HER17_RS01475 - hypothetical protein, at 338,136 to 338,627
_RS01475
HER17_RS01480: HER17_RS01480 - sensor histidine kinase, at 338,668 to 340,386
_RS01480
Position (kb) 338
339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 337.978 kb on + strand at 337.978 kb on + strand at 337.978 kb on + strand at 337.978 kb on + strand at 337.978 kb on + strand at 337.979 kb on - strand at 337.979 kb on - strand at 337.979 kb on - strand at 337.979 kb on - strand at 337.979 kb on - strand at 337.979 kb on - strand at 337.982 kb on + strand at 337.983 kb on - strand at 337.983 kb on - strand at 337.983 kb on - strand at 337.983 kb on - strand at 337.990 kb on + strand at 337.990 kb on + strand at 337.990 kb on + strand at 337.990 kb on + strand at 337.991 kb on - strand at 337.991 kb on - strand at 337.992 kb on + strand at 337.992 kb on + strand at 337.992 kb on + strand at 337.993 kb on - strand at 337.993 kb on - strand at 337.993 kb on - strand at 337.993 kb on - strand at 338.042 kb on + strand at 338.042 kb on + strand at 338.043 kb on - strand at 338.043 kb on - strand at 338.048 kb on + strand at 338.048 kb on + strand at 338.049 kb on - strand at 338.049 kb on - strand at 338.049 kb on - strand at 338.049 kb on - strand at 338.049 kb on - strand at 338.062 kb on + strand at 338.062 kb on + strand at 338.062 kb on + strand at 338.062 kb on + strand at 338.062 kb on + strand at 338.063 kb on - strand at 338.063 kb on - strand at 338.063 kb on - strand at 338.063 kb on - strand at 338.093 kb on + strand at 338.094 kb on - strand at 338.094 kb on - strand at 338.094 kb on - strand at 338.236 kb on + strand, within HER17_RS01475 at 338.236 kb on + strand, within HER17_RS01475 at 338.237 kb on - strand, within HER17_RS01475 at 338.256 kb on + strand, within HER17_RS01475 at 338.257 kb on - strand, within HER17_RS01475 at 338.292 kb on + strand, within HER17_RS01475 at 338.292 kb on + strand, within HER17_RS01475 at 338.292 kb on + strand, within HER17_RS01475 at 338.293 kb on - strand, within HER17_RS01475 at 338.293 kb on - strand, within HER17_RS01475 at 338.293 kb on - strand, within HER17_RS01475 at 338.335 kb on + strand, within HER17_RS01475 at 338.397 kb on + strand, within HER17_RS01475 at 338.398 kb on - strand, within HER17_RS01475 at 338.398 kb on - strand, within HER17_RS01475 at 338.399 kb on + strand, within HER17_RS01475 at 338.399 kb on + strand, within HER17_RS01475 at 338.399 kb on + strand, within HER17_RS01475 at 338.399 kb on + strand, within HER17_RS01475 at 338.399 kb on + strand, within HER17_RS01475 at 338.399 kb on + strand, within HER17_RS01475 at 338.399 kb on + strand, within HER17_RS01475 at 338.400 kb on - strand, within HER17_RS01475 at 338.400 kb on - strand, within HER17_RS01475 at 338.400 kb on - strand, within HER17_RS01475 at 338.400 kb on - strand, within HER17_RS01475 at 338.400 kb on - strand, within HER17_RS01475 at 338.400 kb on - strand, within HER17_RS01475 at 338.404 kb on - strand, within HER17_RS01475 at 338.423 kb on + strand, within HER17_RS01475 at 338.424 kb on - strand, within HER17_RS01475 at 338.424 kb on - strand, within HER17_RS01475 at 338.424 kb on - strand, within HER17_RS01475 at 338.476 kb on + strand, within HER17_RS01475 at 338.476 kb on + strand, within HER17_RS01475 at 338.477 kb on - strand, within HER17_RS01475 at 338.500 kb on - strand, within HER17_RS01475 at 338.515 kb on + strand, within HER17_RS01475 at 338.516 kb on - strand, within HER17_RS01475 at 338.516 kb on - strand, within HER17_RS01475 at 338.525 kb on + strand, within HER17_RS01475 at 338.525 kb on + strand, within HER17_RS01475 at 338.526 kb on - strand, within HER17_RS01475 at 338.527 kb on + strand, within HER17_RS01475 at 338.608 kb on + strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.640 kb on + strand at 338.641 kb on - strand at 338.641 kb on - strand at 338.641 kb on - strand at 338.643 kb on + strand at 338.646 kb on + strand at 338.646 kb on + strand at 338.646 kb on + strand at 338.646 kb on + strand at 338.646 kb on + strand at 338.646 kb on + strand at 338.647 kb on - strand at 338.647 kb on - strand at 338.647 kb on - strand at 338.653 kb on + strand at 338.653 kb on + strand at 338.653 kb on + strand at 338.653 kb on + strand at 338.654 kb on - strand at 338.654 kb on - strand at 338.680 kb on - strand at 338.696 kb on - strand at 338.725 kb on + strand at 338.725 kb on + strand at 338.852 kb on + strand, within HER17_RS01480 at 338.852 kb on + strand, within HER17_RS01480 at 338.872 kb on + strand, within HER17_RS01480 at 338.873 kb on - strand, within HER17_RS01480 at 338.879 kb on - strand, within HER17_RS01480 at 338.947 kb on - strand, within HER17_RS01480 at 339.105 kb on + strand, within HER17_RS01480 at 339.199 kb on + strand, within HER17_RS01480 at 339.199 kb on + strand, within HER17_RS01480 at 339.216 kb on + strand, within HER17_RS01480 at 339.216 kb on + strand, within HER17_RS01480 at 339.228 kb on + strand, within HER17_RS01480 at 339.229 kb on - strand, within HER17_RS01480 at 339.361 kb on - strand, within HER17_RS01480 at 339.379 kb on + strand, within HER17_RS01480 at 339.385 kb on - strand, within HER17_RS01480 at 339.469 kb on - strand, within HER17_RS01480 at 339.469 kb on - strand, within HER17_RS01480 at 339.492 kb on + strand, within HER17_RS01480 at 339.492 kb on + strand, within HER17_RS01480 at 339.492 kb on + strand, within HER17_RS01480 at 339.492 kb on + strand, within HER17_RS01480 at 339.494 kb on + strand, within HER17_RS01480 at 339.494 kb on + strand, within HER17_RS01480 at 339.494 kb on + strand, within HER17_RS01480 at 339.495 kb on - strand, within HER17_RS01480 at 339.495 kb on - strand, within HER17_RS01480 at 339.495 kb on - strand, within HER17_RS01480 at 339.495 kb on - strand, within HER17_RS01480 at 339.495 kb on - strand, within HER17_RS01480 at 339.495 kb on - strand, within HER17_RS01480 at 339.495 kb on - strand, within HER17_RS01480 at 339.495 kb on - strand, within HER17_RS01480 at 339.495 kb on - strand, within HER17_RS01480 at 339.518 kb on + strand, within HER17_RS01480 at 339.519 kb on - strand, within HER17_RS01480 at 339.567 kb on + strand, within HER17_RS01480
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 337,978 + +0.0 337,978 + -0.2 337,978 + -0.8 337,978 + +0.0 337,978 + +0.5 337,979 - -0.9 337,979 - -0.2 337,979 - -0.2 337,979 - +0.5 337,979 - -0.8 337,979 - -0.2 337,982 + -0.4 337,983 - +0.6 337,983 - -0.3 337,983 - +0.5 337,983 - -0.2 337,990 + -2.5 337,990 + +0.9 337,990 + +0.1 337,990 + -0.1 337,991 - +0.2 337,991 - -1.2 337,992 + -0.3 337,992 + +0.2 337,992 + +0.2 337,993 - -0.1 337,993 - +0.4 337,993 - +0.4 337,993 - +0.3 338,042 + +0.1 338,042 + -0.6 338,043 - +0.3 338,043 - +0.6 338,048 + -0.3 338,048 + -0.4 338,049 - +0.9 338,049 - -0.3 338,049 - +0.7 338,049 - -0.5 338,049 - +0.2 338,062 + -0.1 338,062 + -0.2 338,062 + -0.1 338,062 + -0.3 338,062 + +0.5 338,063 - +0.0 338,063 - -0.7 338,063 - +0.3 338,063 - -0.3 338,093 + -0.3 338,094 - -1.0 338,094 - -0.1 338,094 - +0.4 338,236 + HER17_RS01475 0.20 -0.0 338,236 + HER17_RS01475 0.20 -0.3 338,237 - HER17_RS01475 0.21 +0.0 338,256 + HER17_RS01475 0.24 -0.4 338,257 - HER17_RS01475 0.25 -0.5 338,292 + HER17_RS01475 0.32 -0.4 338,292 + HER17_RS01475 0.32 -0.8 338,292 + HER17_RS01475 0.32 +0.0 338,293 - HER17_RS01475 0.32 -1.0 338,293 - HER17_RS01475 0.32 +1.1 338,293 - HER17_RS01475 0.32 -0.2 338,335 + HER17_RS01475 0.40 +0.4 338,397 + HER17_RS01475 0.53 +1.2 338,398 - HER17_RS01475 0.53 +0.3 338,398 - HER17_RS01475 0.53 -2.4 338,399 + HER17_RS01475 0.53 +0.3 338,399 + HER17_RS01475 0.53 -0.0 338,399 + HER17_RS01475 0.53 -0.1 338,399 + HER17_RS01475 0.53 +0.4 338,399 + HER17_RS01475 0.53 +0.7 338,399 + HER17_RS01475 0.53 -1.1 338,399 + HER17_RS01475 0.53 +0.3 338,400 - HER17_RS01475 0.54 -1.5 338,400 - HER17_RS01475 0.54 -0.9 338,400 - HER17_RS01475 0.54 +0.3 338,400 - HER17_RS01475 0.54 +0.1 338,400 - HER17_RS01475 0.54 -0.1 338,400 - HER17_RS01475 0.54 +0.3 338,404 - HER17_RS01475 0.54 +0.6 338,423 + HER17_RS01475 0.58 +0.2 338,424 - HER17_RS01475 0.59 -0.3 338,424 - HER17_RS01475 0.59 +0.1 338,424 - HER17_RS01475 0.59 -0.6 338,476 + HER17_RS01475 0.69 -0.2 338,476 + HER17_RS01475 0.69 -0.4 338,477 - HER17_RS01475 0.69 -0.1 338,500 - HER17_RS01475 0.74 +0.1 338,515 + HER17_RS01475 0.77 -0.2 338,516 - HER17_RS01475 0.77 +0.6 338,516 - HER17_RS01475 0.77 +0.3 338,525 + HER17_RS01475 0.79 +0.0 338,525 + HER17_RS01475 0.79 +0.4 338,526 - HER17_RS01475 0.79 -0.8 338,527 + HER17_RS01475 0.79 +0.3 338,608 + -1.0 338,640 + -0.3 338,640 + +0.1 338,640 + -0.1 338,641 - -0.5 338,641 - +0.5 338,641 - +0.9 338,643 + -0.6 338,646 + +0.6 338,646 + -0.1 338,646 + -0.9 338,646 + +0.4 338,646 + +0.1 338,646 + +0.4 338,647 - -0.0 338,647 - +0.2 338,647 - +0.4 338,653 + +0.5 338,653 + +0.4 338,653 + -1.6 338,653 + +0.9 338,654 - +0.2 338,654 - +0.3 338,680 - -1.1 338,696 - -0.5 338,725 + -0.3 338,725 + +1.0 338,852 + HER17_RS01480 0.11 +0.3 338,852 + HER17_RS01480 0.11 +1.7 338,872 + HER17_RS01480 0.12 -0.1 338,873 - HER17_RS01480 0.12 -0.3 338,879 - HER17_RS01480 0.12 -0.4 338,947 - HER17_RS01480 0.16 +0.8 339,105 + HER17_RS01480 0.25 -0.1 339,199 + HER17_RS01480 0.31 +0.5 339,199 + HER17_RS01480 0.31 +1.4 339,216 + HER17_RS01480 0.32 +0.4 339,216 + HER17_RS01480 0.32 +0.7 339,228 + HER17_RS01480 0.33 -0.6 339,229 - HER17_RS01480 0.33 -0.3 339,361 - HER17_RS01480 0.40 -0.1 339,379 + HER17_RS01480 0.41 +0.8 339,385 - HER17_RS01480 0.42 -0.3 339,469 - HER17_RS01480 0.47 +0.5 339,469 - HER17_RS01480 0.47 +0.2 339,492 + HER17_RS01480 0.48 -1.5 339,492 + HER17_RS01480 0.48 +0.1 339,492 + HER17_RS01480 0.48 +1.6 339,492 + HER17_RS01480 0.48 +0.7 339,494 + HER17_RS01480 0.48 +1.9 339,494 + HER17_RS01480 0.48 +0.5 339,494 + HER17_RS01480 0.48 -0.7 339,495 - HER17_RS01480 0.48 -0.5 339,495 - HER17_RS01480 0.48 +1.4 339,495 - HER17_RS01480 0.48 -0.1 339,495 - HER17_RS01480 0.48 +0.1 339,495 - HER17_RS01480 0.48 -0.6 339,495 - HER17_RS01480 0.48 +1.2 339,495 - HER17_RS01480 0.48 +0.5 339,495 - HER17_RS01480 0.48 +0.3 339,495 - HER17_RS01480 0.48 +0.1 339,518 + HER17_RS01480 0.49 -0.5 339,519 - HER17_RS01480 0.50 -0.3 339,567 + HER17_RS01480 0.52 -0.2
Or see this region's nucleotide sequence